Wall clock time and date at job start Tue Mar 31 2020 20:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47265 * 239.99899 * 2 1 3 5 5 H 1.08003 * 119.99962 * 239.99845 * 4 2 1 6 6 C 1.37874 * 120.00270 * 60.00237 * 4 2 1 7 7 N 1.31522 * 119.99834 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47141 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47494 * 119.99680 * 8 6 4 11 11 H 1.48505 * 109.47047 * 239.99860 * 8 6 4 12 12 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 13 13 N 1.46500 * 109.46998 * 300.00051 * 12 2 1 14 14 C 1.34769 * 120.00241 * 180.02562 * 13 12 2 15 15 O 1.21353 * 120.00155 * 359.97438 * 14 13 12 16 16 C 1.49452 * 120.00169 * 180.02562 * 14 13 12 17 17 O 1.21346 * 120.00038 * 0.02562 * 16 14 13 18 18 N 1.34779 * 120.00093 * 179.97438 * 16 14 13 19 19 C 1.46500 * 120.00165 * 179.97438 * 18 16 14 20 20 H 1.08996 * 115.54816 * 350.66932 * 19 18 16 21 21 C 1.52999 * 117.49938 * 136.38058 * 19 18 16 22 22 C 1.52997 * 117.49868 * 205.00409 * 19 18 16 23 23 H 1.08998 * 117.50244 * 144.99802 * 22 19 18 24 24 C 1.53001 * 117.49963 * 359.97438 * 22 19 18 25 25 C 1.53000 * 109.47106 * 180.02562 * 24 22 19 26 26 C 1.53001 * 109.47106 * 179.97438 * 25 24 22 27 27 C 1.53003 * 109.47187 * 60.00245 * 26 25 24 28 28 C 1.53000 * 109.46898 * 299.99882 * 27 26 25 29 29 C 1.52996 * 109.47151 * 60.00168 * 24 22 19 30 30 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 31 31 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 32 32 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 35 35 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 36 36 H 0.96992 * 120.00032 * 180.02562 * 7 6 4 37 37 H 1.09000 * 109.47050 * 59.99996 * 12 2 1 38 38 H 1.09001 * 109.46801 * 180.02562 * 12 2 1 39 39 H 0.97010 * 119.99910 * 359.97438 * 13 12 2 40 40 H 0.97004 * 119.99472 * 0.02562 * 18 16 14 41 41 H 1.08995 * 117.49784 * 214.98100 * 21 19 18 42 42 H 1.09002 * 117.49641 * 359.97438 * 21 19 18 43 43 H 1.09006 * 109.47242 * 300.00084 * 24 22 19 44 44 H 1.08998 * 109.47469 * 299.99640 * 25 24 22 45 45 H 1.08997 * 109.47137 * 60.00243 * 25 24 22 46 46 H 1.08998 * 109.47568 * 300.00032 * 26 25 24 47 47 H 1.09000 * 109.47109 * 179.97438 * 26 25 24 48 48 H 1.08994 * 109.47457 * 180.02562 * 27 26 25 49 49 H 1.08998 * 109.47040 * 59.99464 * 27 26 25 50 50 H 1.09004 * 109.47507 * 300.00008 * 28 27 26 51 51 H 1.08997 * 109.47137 * 179.97438 * 28 27 26 52 52 H 1.08997 * 109.47437 * 300.00043 * 29 24 22 53 53 H 1.09006 * 109.47116 * 59.99839 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1662 -1.5867 -4.8161 11 1 3.1467 -0.1873 -4.8164 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5753 -1.4774 3.7809 16 6 1.3789 0.2134 4.8898 17 8 0.6801 1.1992 4.7784 18 7 1.7045 -0.2470 6.1139 19 6 1.2162 0.4436 7.3101 20 1 0.7322 1.4041 7.1336 21 6 0.6794 -0.4189 8.4541 22 6 2.0288 0.2878 8.5970 23 1 2.0795 1.1459 9.2672 24 6 3.2890 -0.5777 8.5363 25 6 3.9540 -0.6075 9.9139 26 6 5.2139 -1.4736 9.8534 27 6 6.1877 -0.8866 8.8296 28 6 5.5226 -0.8568 7.4521 29 6 4.2622 0.0095 7.5122 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.7083 1.1608 -3.4844 37 1 1.6767 -1.7490 1.2492 38 1 3.1300 -0.7209 1.2494 39 1 0.9942 0.7583 2.3564 40 1 2.2628 -1.0353 6.2028 41 1 -0.1581 -0.0259 9.0305 42 1 0.6892 -1.5002 8.3166 43 1 3.0194 -1.5919 8.2414 44 1 4.2237 0.4065 10.2093 45 1 3.2605 -1.0261 10.6432 46 1 4.9440 -2.4875 9.5583 47 1 5.6879 -1.4944 10.8347 48 1 7.0850 -1.5038 8.7862 49 1 6.4575 0.1274 9.1248 50 1 5.2526 -1.8708 7.1569 51 1 6.2162 -0.4382 6.7228 52 1 3.7883 0.0304 6.5309 53 1 4.5318 1.0237 7.8071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325976025.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:45 Heat of formation + Delta-G solvation = -89.471007 kcal Electronic energy + Delta-G solvation = -29864.772365 eV Core-core repulsion = 25928.386404 eV Total energy + Delta-G solvation = -3936.385961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.85916 -40.50230 -39.44497 -38.20741 -37.62655 -35.21183 -34.03961 -32.75226 -31.55847 -31.32887 -28.05305 -27.59676 -27.25416 -25.41009 -24.23343 -23.47391 -22.73562 -21.68588 -21.07863 -20.72997 -20.51271 -19.64373 -18.13063 -17.73892 -17.03064 -16.93575 -16.68223 -16.20654 -16.09833 -15.70769 -15.46335 -15.16794 -14.99778 -14.81947 -14.76705 -14.42194 -14.28089 -14.05197 -13.52606 -13.38527 -13.22874 -13.14449 -13.04742 -12.77337 -12.71875 -12.62419 -12.56385 -12.29124 -12.24609 -12.12426 -12.05650 -11.94646 -11.51829 -11.42184 -11.31272 -11.25565 -11.07892 -10.81677 -10.71951 -10.60876 -10.42048 -10.15274 -9.75613 -8.02088 -6.18508 0.29898 1.29052 1.42836 1.47224 1.56402 2.07721 2.44561 2.65127 2.86282 3.21855 3.40652 3.53949 3.71912 3.83947 3.96849 4.03060 4.17124 4.33338 4.36602 4.44637 4.46093 4.57474 4.62907 4.66181 4.66786 4.69801 4.72803 4.78500 4.91259 4.92023 4.99043 5.02982 5.04740 5.16221 5.19807 5.20023 5.20468 5.26697 5.29154 5.31603 5.36012 5.43361 5.47138 5.48824 5.62185 5.63873 5.67294 5.92435 6.10344 6.18073 6.35337 6.40644 6.70695 6.85709 6.93975 7.49543 8.97431 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.002283 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.731684 B =12261.794932 C =13203.849344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.050 3.950 3 C -0.124 4.124 4 C -0.524 4.524 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.143 3.857 13 N -0.680 5.680 14 C 0.497 3.503 15 O -0.550 6.550 16 C 0.515 3.485 17 O -0.540 6.540 18 N -0.657 5.657 19 C 0.052 3.948 20 H 0.132 0.868 21 C -0.169 4.169 22 C -0.133 4.133 23 H 0.130 0.870 24 C -0.057 4.057 25 C -0.104 4.104 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.123 4.123 29 C -0.120 4.120 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.260 0.740 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.413 0.587 40 H 0.417 0.583 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.057 0.943 51 H 0.053 0.947 52 H 0.050 0.950 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 -1.441 27.296 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.182 4.182 4 C -0.563 4.563 5 H 0.069 0.931 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.021 3.979 13 N -0.332 5.332 14 C 0.277 3.723 15 O -0.429 6.429 16 C 0.296 3.704 17 O -0.417 6.417 18 N -0.309 5.309 19 C -0.053 4.053 20 H 0.150 0.850 21 C -0.207 4.207 22 C -0.153 4.153 23 H 0.148 0.852 24 C -0.076 4.076 25 C -0.142 4.142 26 C -0.157 4.157 27 C -0.155 4.155 28 C -0.161 4.161 29 C -0.157 4.157 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.251 0.749 40 H 0.256 0.744 41 H 0.140 0.860 42 H 0.120 0.880 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.075 0.925 51 H 0.071 0.929 52 H 0.069 0.931 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.043 -1.330 27.118 27.450 hybrid contribution 0.281 -0.376 -1.448 1.522 sum 4.324 -1.705 25.670 26.087 Atomic orbital electron populations 1.21709 0.97339 0.98928 1.00221 1.18385 0.93157 0.92998 0.90508 1.21711 0.98230 0.98039 1.00219 1.21260 1.31676 1.12209 0.91123 0.93055 1.25504 0.95143 0.95590 1.01178 1.69933 1.37037 1.23446 1.23580 0.85651 0.78046 0.78717 0.80039 1.19639 1.20891 1.20907 1.21558 0.97920 0.95499 0.82962 1.46065 1.50714 1.31432 1.04981 1.20307 0.81744 0.84933 0.85274 1.90716 1.38477 1.26632 1.87071 1.19989 0.80991 0.84402 0.85015 1.90740 1.37684 1.26352 1.86917 1.45214 1.50796 1.31257 1.03659 1.21923 1.04530 0.98853 0.79966 0.85042 1.23674 0.97791 0.99577 0.99680 1.22974 0.92184 1.02377 0.97722 0.85212 1.20746 0.92550 0.97899 0.96377 1.21496 0.96596 1.00636 0.95431 1.21544 0.95828 0.99158 0.99176 1.21527 0.98225 1.01301 0.94455 1.21557 0.96925 0.99919 0.97664 1.21701 0.95763 0.99510 0.98766 0.95173 0.91768 0.95731 0.95750 0.91761 0.95186 0.93053 0.92690 0.92722 0.74899 0.74367 0.86038 0.88024 0.91420 0.91471 0.90845 0.92240 0.91051 0.91960 0.91906 0.92464 0.92862 0.93097 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.08 71.98 0.58 -5.09 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.68 8.08 71.98 0.58 -5.10 16 4 C -0.52 -27.32 8.01 25.60 0.21 -27.11 16 5 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 6 C 0.03 1.34 5.15 84.65 0.44 1.77 16 7 N -0.90 -48.42 9.35 21.45 0.20 -48.22 16 8 Si 0.95 42.34 29.54 68.60 2.03 44.37 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.14 5.98 4.50 86.38 0.39 6.37 16 13 N -0.68 -24.95 4.95 -464.40 -2.30 -27.25 16 14 C 0.50 17.18 7.89 87.27 0.69 17.87 16 15 O -0.55 -20.66 16.48 -3.26 -0.05 -20.71 16 16 C 0.52 15.45 7.89 87.27 0.69 16.14 16 17 O -0.54 -18.21 16.04 -3.24 -0.05 -18.26 16 18 N -0.66 -14.99 3.78 -443.87 -1.68 -16.66 16 19 C 0.05 0.92 6.22 44.99 0.28 1.20 16 20 H 0.13 2.62 7.40 -2.39 -0.02 2.60 16 21 C -0.17 -2.05 10.10 30.59 0.31 -1.74 16 22 C -0.13 -1.63 5.15 -10.79 -0.06 -1.69 16 23 H 0.13 1.24 8.11 -2.39 -0.02 1.22 16 24 C -0.06 -0.74 1.70 -10.79 -0.02 -0.76 16 25 C -0.10 -1.07 5.19 30.59 0.16 -0.91 16 26 C -0.12 -1.31 5.92 30.60 0.18 -1.13 16 27 C -0.12 -1.54 5.92 30.60 0.18 -1.36 16 28 C -0.12 -2.06 5.92 30.61 0.18 -1.88 16 29 C -0.12 -2.01 4.87 30.61 0.15 -1.86 16 30 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 31 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 32 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 35 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 36 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 37 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.41 14.83 5.64 -92.70 -0.52 14.31 16 40 H 0.42 9.01 6.28 -92.71 -0.58 8.43 16 41 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.10 1.23 8.05 -2.39 -0.02 1.22 16 43 H 0.07 0.94 7.61 -2.38 -0.02 0.92 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 51 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.05 1.06 5.39 -2.39 -0.01 1.05 16 53 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -58.52 406.95 2.86 -55.66 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: -0.20 Total: 34.04 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 4.91 Total: -2.97 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -3.78 Total: -92.13 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.11 Total: -38.97 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -58.52 2.86 -55.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325976025.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.808 kcal (2) G-P(sol) polarization free energy of solvation -58.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds