Wall clock time and date at job start Tue Mar 31 2020 20:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47474 * 2 1 4 4 C 1.50702 * 109.47182 * 239.99596 * 2 1 3 5 5 H 1.07998 * 119.99742 * 240.00507 * 4 2 1 6 6 C 1.37872 * 119.99858 * 60.00186 * 4 2 1 7 7 N 1.31518 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00078 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47264 * 89.99937 * 8 6 4 10 10 H 1.48500 * 109.47468 * 210.00290 * 8 6 4 11 11 H 1.48503 * 109.47327 * 329.99952 * 8 6 4 12 12 C 1.53002 * 109.46733 * 119.99609 * 2 1 3 13 13 N 1.46501 * 109.47544 * 300.00073 * 12 2 1 14 14 C 1.34775 * 119.99970 * 180.02562 * 13 12 2 15 15 O 1.21350 * 119.99960 * 359.97438 * 14 13 12 16 16 C 1.49451 * 119.99690 * 180.02562 * 14 13 12 17 17 O 1.21350 * 120.00349 * 359.97438 * 16 14 13 18 18 N 1.34775 * 119.99690 * 180.02562 * 16 14 13 19 19 C 1.46501 * 119.99970 * 179.97438 * 18 16 14 20 20 H 1.09007 * 115.54992 * 9.27417 * 19 18 16 21 21 C 1.53000 * 117.50040 * 223.60695 * 19 18 16 22 22 C 1.53002 * 60.02940 * 252.49639 * 21 19 18 23 23 H 1.08999 * 117.49664 * 252.51862 * 22 21 19 24 24 C 1.52999 * 117.49968 * 107.50530 * 22 21 19 25 25 C 1.53004 * 109.46970 * 231.38993 * 24 22 21 26 26 C 1.52994 * 109.47133 * 179.97438 * 25 24 22 27 27 C 1.53002 * 109.47211 * 59.99948 * 26 25 24 28 28 C 1.52995 * 109.47191 * 299.99937 * 27 26 25 29 29 C 1.52992 * 109.47489 * 111.38833 * 24 22 21 30 30 H 1.09001 * 109.46997 * 300.00655 * 1 2 3 31 31 H 1.09005 * 109.46780 * 60.00081 * 1 2 3 32 32 H 1.08999 * 109.47482 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47452 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46919 * 299.99940 * 3 2 1 35 35 H 1.09006 * 109.47158 * 59.99959 * 3 2 1 36 36 H 0.97000 * 120.00156 * 179.97438 * 7 6 4 37 37 H 1.09001 * 109.47104 * 179.97438 * 12 2 1 38 38 H 1.08999 * 109.47084 * 60.00459 * 12 2 1 39 39 H 0.96995 * 119.99529 * 359.97438 * 13 12 2 40 40 H 0.96995 * 120.00501 * 359.97438 * 18 16 14 41 41 H 1.09002 * 117.49833 * 359.97438 * 21 19 18 42 42 H 1.09002 * 117.49953 * 144.99785 * 21 19 18 43 43 H 1.08997 * 109.47098 * 351.38476 * 24 22 21 44 44 H 1.09006 * 109.46767 * 299.99843 * 25 24 22 45 45 H 1.09004 * 109.46881 * 59.99512 * 25 24 22 46 46 H 1.08997 * 109.47267 * 299.99686 * 26 25 24 47 47 H 1.08997 * 109.47128 * 179.97438 * 26 25 24 48 48 H 1.08995 * 109.47058 * 179.97438 * 27 26 25 49 49 H 1.09006 * 109.47090 * 59.99604 * 27 26 25 50 50 H 1.08998 * 109.47341 * 300.00183 * 28 27 26 51 51 H 1.08995 * 109.47496 * 179.97438 * 28 27 26 52 52 H 1.09000 * 109.47547 * 299.99919 * 29 24 22 53 53 H 1.08997 * 109.47242 * 59.99731 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3213 -1.1205 -4.0078 9 1 1.3427 -2.1618 -4.4117 10 1 2.4867 -0.1417 -5.1122 11 1 3.6293 -1.7586 -3.7121 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4455 14 6 1.8775 -0.4907 3.6696 15 8 2.5752 -1.4774 3.7809 16 6 1.3788 0.2135 4.8898 17 8 0.6808 1.1999 4.7784 18 7 1.7052 -0.2463 6.1139 19 6 1.2169 0.4443 7.3101 20 1 0.4726 1.2209 7.1336 21 6 2.2092 0.6637 8.4538 22 6 1.0937 -0.3736 8.5981 23 1 0.2683 -0.1349 9.2687 24 6 1.4900 -1.8501 8.5384 25 6 0.6116 -2.5730 7.5152 26 6 1.0083 -4.0494 7.4551 27 6 0.8153 -4.6859 8.8330 28 6 1.6937 -3.9631 9.8561 29 6 1.2966 -2.4862 9.9163 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.7087 1.1611 -3.4844 37 1 3.1299 -0.7216 1.2492 38 1 1.6766 -1.7489 1.2493 39 1 0.9942 0.7583 2.3564 40 1 2.2635 -1.0345 6.2030 41 1 3.2253 0.2938 8.3164 42 1 2.1177 1.5845 9.0298 43 1 2.5358 -1.9340 8.2430 44 1 -0.4343 -2.4891 7.8106 45 1 0.7494 -2.1197 6.5335 46 1 2.0541 -4.1329 7.1595 47 1 0.3822 -4.5644 6.7265 48 1 1.0975 -5.7378 8.7900 49 1 -0.2306 -4.6023 9.1286 50 1 2.7395 -4.0465 9.5606 51 1 1.5559 -4.4162 10.8378 52 1 1.9224 -1.9713 10.6453 53 1 0.2508 -2.4023 10.2117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325976027.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:53 Heat of formation + Delta-G solvation = -89.456165 kcal Electronic energy + Delta-G solvation = -29863.082386 eV Core-core repulsion = 25926.697069 eV Total energy + Delta-G solvation = -3936.385317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.85822 -40.50020 -39.44525 -38.20746 -37.62494 -35.21153 -34.04019 -32.75200 -31.55880 -31.32862 -28.05307 -27.59675 -27.25197 -25.41044 -24.23336 -23.47330 -22.73350 -21.68630 -21.07900 -20.72952 -20.51379 -19.64346 -18.13049 -17.73566 -17.03046 -16.93486 -16.68366 -16.20682 -16.09895 -15.70641 -15.46353 -15.16948 -14.99794 -14.81788 -14.76441 -14.42189 -14.28249 -14.05238 -13.52426 -13.38544 -13.22376 -13.13606 -13.04770 -12.77365 -12.70737 -12.62424 -12.59164 -12.28685 -12.24624 -12.12429 -12.05621 -11.94669 -11.51660 -11.42209 -11.31353 -11.25583 -11.07823 -10.81801 -10.72438 -10.61054 -10.41545 -10.15239 -9.75541 -8.01853 -6.18392 0.29857 1.29024 1.44167 1.47217 1.55238 2.07682 2.44653 2.65133 2.86207 3.22030 3.40627 3.53852 3.71902 3.83987 3.96796 4.03106 4.17142 4.33396 4.36600 4.44647 4.46038 4.57507 4.62906 4.66167 4.66815 4.69754 4.72803 4.78488 4.91290 4.91976 4.99012 5.02949 5.04789 5.16260 5.19819 5.20008 5.20473 5.26701 5.29162 5.31586 5.36032 5.43344 5.47141 5.48813 5.62197 5.63926 5.67129 5.92449 6.10381 6.18099 6.35368 6.40659 6.70698 6.85596 6.93947 7.49603 8.97455 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.002282 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.531410 B =12265.245760 C =13207.006003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.050 3.950 3 C -0.124 4.124 4 C -0.525 4.525 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.143 3.857 13 N -0.680 5.680 14 C 0.497 3.503 15 O -0.550 6.550 16 C 0.515 3.485 17 O -0.540 6.540 18 N -0.657 5.657 19 C 0.052 3.948 20 H 0.132 0.868 21 C -0.169 4.169 22 C -0.133 4.133 23 H 0.130 0.870 24 C -0.057 4.057 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.104 4.104 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.260 0.740 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.413 0.587 40 H 0.417 0.583 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.059 0.941 51 H 0.071 0.929 52 H 0.073 0.927 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 -4.354 27.288 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.182 4.182 4 C -0.564 4.564 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.021 3.979 13 N -0.332 5.332 14 C 0.277 3.723 15 O -0.429 6.429 16 C 0.296 3.704 17 O -0.417 6.417 18 N -0.309 5.309 19 C -0.053 4.053 20 H 0.150 0.850 21 C -0.207 4.207 22 C -0.153 4.153 23 H 0.148 0.852 24 C -0.076 4.076 25 C -0.157 4.157 26 C -0.161 4.161 27 C -0.155 4.155 28 C -0.157 4.157 29 C -0.142 4.142 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.251 0.749 40 H 0.256 0.744 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.078 0.922 51 H 0.089 0.911 52 H 0.092 0.908 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.086 -4.235 27.108 27.437 hybrid contribution 0.261 -0.406 -1.441 1.520 sum 0.175 -4.641 25.666 26.083 Atomic orbital electron populations 1.21712 0.97367 0.98900 1.00224 1.18380 0.93132 0.93013 0.90493 1.21708 0.98240 0.98021 1.00219 1.21233 1.31783 1.12247 0.91137 0.93047 1.25500 0.95142 0.95572 1.01165 1.69926 1.37014 1.23384 1.23642 0.85705 0.78719 0.78367 0.79688 1.20522 1.21080 1.19776 1.21555 0.97934 0.95490 0.82968 1.46062 1.50713 1.31437 1.04981 1.20308 0.81763 0.84912 0.85273 1.90715 1.38496 1.26606 1.87070 1.19988 0.81086 0.84309 0.85013 1.90741 1.37813 1.26223 1.86917 1.45208 1.50994 1.31053 1.03659 1.21936 1.02838 1.00546 0.79963 0.85037 1.23677 0.95672 1.01691 0.99681 1.22985 1.01812 0.92761 0.97699 0.85216 1.20744 0.99121 0.91321 0.96380 1.21691 1.00000 0.95271 0.98771 1.21544 1.01216 0.95637 0.97662 1.21527 1.00306 0.99219 0.94459 1.21550 0.99489 0.95488 0.99175 1.21504 1.02109 0.95123 0.95425 0.95188 0.91749 0.95769 0.95734 0.91762 0.95182 0.93043 0.92705 0.92716 0.74901 0.74372 0.88028 0.86034 0.91418 0.91899 0.93106 0.92462 0.92861 0.91963 0.91912 0.92238 0.91053 0.90843 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.08 71.98 0.58 -5.10 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 4 C -0.53 -27.40 8.01 25.60 0.21 -27.19 16 5 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 6 C 0.03 1.36 5.15 84.65 0.44 1.80 16 7 N -0.90 -48.42 9.35 21.45 0.20 -48.22 16 8 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 12 C 0.14 5.98 4.50 86.38 0.39 6.37 16 13 N -0.68 -24.96 4.95 -464.41 -2.30 -27.26 16 14 C 0.50 17.19 7.89 87.27 0.69 17.87 16 15 O -0.55 -20.66 16.48 -3.25 -0.05 -20.71 16 16 C 0.52 15.46 7.89 87.27 0.69 16.14 16 17 O -0.54 -18.21 16.04 -3.25 -0.05 -18.26 16 18 N -0.66 -14.99 3.78 -443.75 -1.68 -16.66 16 19 C 0.05 0.92 6.23 45.01 0.28 1.20 16 20 H 0.13 2.62 7.40 -2.38 -0.02 2.60 16 21 C -0.17 -2.05 10.10 30.60 0.31 -1.74 16 22 C -0.13 -1.63 5.15 -10.77 -0.06 -1.69 16 23 H 0.13 1.24 8.11 -2.39 -0.02 1.22 16 24 C -0.06 -0.74 1.70 -10.80 -0.02 -0.76 16 25 C -0.12 -2.01 4.87 30.59 0.15 -1.86 16 26 C -0.12 -2.06 5.92 30.59 0.18 -1.88 16 27 C -0.12 -1.54 5.92 30.59 0.18 -1.36 16 28 C -0.12 -1.31 5.92 30.61 0.18 -1.13 16 29 C -0.10 -1.07 5.19 30.61 0.16 -0.91 16 30 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 31 H 0.06 3.27 6.07 -2.38 -0.01 3.25 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 35 H 0.03 1.20 6.86 -2.38 -0.02 1.19 16 36 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 37 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.41 14.84 5.63 -92.71 -0.52 14.32 16 40 H 0.42 9.01 6.29 -92.71 -0.58 8.43 16 41 H 0.10 1.23 8.05 -2.39 -0.02 1.21 16 42 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 0.94 7.61 -2.39 -0.02 0.92 16 44 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.05 1.06 5.39 -2.39 -0.01 1.05 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 50 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -58.48 406.97 2.86 -55.62 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -0.20 Total: 34.14 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 4.91 Total: -3.00 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -3.78 Total: -92.14 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.11 Total: -38.97 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -58.48 2.86 -55.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325976027.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.832 kcal (2) G-P(sol) polarization free energy of solvation -58.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds