Wall clock time and date at job start Tue Mar 31 2020 21:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 H 1.09004 * 109.50269 * 304.93330 * 3 2 1 5 5 C 1.53048 * 109.52535 * 184.85462 * 3 2 1 6 6 C 1.53032 * 109.54096 * 178.66701 * 5 3 2 7 7 C 1.53200 * 109.31368 * 61.36431 * 6 5 3 8 8 H 1.08996 * 109.58786 * 185.57885 * 7 6 5 9 9 C 1.53001 * 109.58300 * 65.15196 * 7 6 5 10 10 N 1.46919 * 108.77470 * 305.37065 * 7 6 5 11 11 C 1.34778 * 120.62678 * 233.87867 * 10 7 6 12 12 O 1.21348 * 120.00417 * 354.68115 * 11 10 7 13 13 C 1.49455 * 120.00095 * 174.67651 * 11 10 7 14 14 O 1.21342 * 120.00039 * 85.35784 * 13 11 10 15 15 N 1.34773 * 119.99917 * 265.36258 * 13 11 10 16 16 C 1.46928 * 120.63309 * 5.04930 * 15 13 11 17 17 C 1.53196 * 108.77374 * 233.58438 * 16 15 13 18 18 C 1.53034 * 109.31850 * 305.36481 * 17 16 15 19 19 C 1.53040 * 109.53701 * 61.36349 * 18 17 16 20 20 H 1.09001 * 109.49996 * 58.58744 * 19 18 17 21 21 C 1.50699 * 109.49999 * 178.65297 * 19 18 17 22 22 H 1.08004 * 119.99943 * 0.02562 * 21 19 18 23 23 C 1.37880 * 120.00382 * 179.97438 * 21 19 18 24 24 N 1.31514 * 119.99422 * 0.02562 * 23 21 19 25 25 Si 1.86793 * 120.00174 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47003 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47310 * 120.00139 * 25 23 21 28 28 H 1.48502 * 109.47308 * 240.00208 * 25 23 21 29 29 C 1.46931 * 120.63117 * 184.76926 * 15 13 11 30 30 C 1.46925 * 118.74288 * 53.60350 * 10 7 6 31 31 H 1.09000 * 109.46770 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47362 * 299.99653 * 1 2 3 33 33 H 1.08998 * 109.47497 * 59.99635 * 1 2 3 34 34 H 1.08999 * 109.47362 * 240.00347 * 2 1 3 35 35 H 1.08996 * 109.47774 * 119.99906 * 2 1 3 36 36 H 1.08995 * 109.45965 * 298.69284 * 5 3 2 37 37 H 1.08996 * 109.45630 * 58.66057 * 5 3 2 38 38 H 1.08995 * 109.50257 * 181.31813 * 6 5 3 39 39 H 1.09000 * 109.50325 * 301.38579 * 6 5 3 40 40 H 1.09000 * 109.47450 * 300.71491 * 9 7 6 41 41 H 1.09004 * 109.47284 * 60.71155 * 9 7 6 42 42 H 1.08998 * 109.46996 * 180.70886 * 9 7 6 43 43 H 1.08996 * 109.58698 * 353.37057 * 16 15 13 44 44 H 1.08996 * 109.58420 * 113.65929 * 16 15 13 45 45 H 1.08999 * 109.49593 * 65.31850 * 17 16 15 46 46 H 1.09000 * 109.49417 * 185.37583 * 17 16 15 47 47 H 1.08992 * 109.46186 * 181.38288 * 18 17 16 48 48 H 1.08998 * 109.45820 * 301.35050 * 18 17 16 49 49 H 0.97003 * 119.99295 * 179.97438 * 24 23 21 50 50 H 1.08993 * 109.58666 * 246.20215 * 29 15 13 51 51 H 1.09000 * 109.58244 * 6.62716 * 29 15 13 52 52 H 1.08997 * 109.58443 * 66.18072 * 30 10 7 53 53 H 1.09007 * 109.58802 * 186.60638 * 30 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6064 1.9817 -0.8424 5 6 3.5655 1.4458 -0.1221 6 6 4.0732 2.8890 -0.1555 7 6 3.6913 3.5910 1.1515 8 1 3.9627 4.6450 1.0930 9 6 4.4267 2.9330 2.3208 10 7 2.2408 3.4659 1.3490 11 6 1.4796 4.5584 1.5576 12 8 2.0013 5.6472 1.6799 13 6 -0.0072 4.4290 1.6382 14 8 -0.5351 4.1432 2.6927 15 7 -0.7615 4.6296 0.5395 16 6 -0.1329 4.8670 -0.7671 17 6 -0.6995 6.1616 -1.3588 18 6 -2.2266 6.0722 -1.4030 19 6 -2.7712 5.9118 0.0182 20 1 -2.4546 6.7588 0.6269 21 6 -4.2766 5.8571 -0.0232 22 1 -4.7938 5.9290 -0.9687 23 6 -4.9938 5.7141 1.1457 24 7 -4.3639 5.6261 2.2968 25 14 -6.8598 5.6470 1.0944 26 1 -7.3209 5.7672 -0.3122 27 1 -7.3243 4.3543 1.6583 28 1 -7.4176 6.7657 1.8960 29 6 -2.2282 4.6088 0.6244 30 6 1.6350 2.1280 1.3088 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.9993 0.9279 0.7333 37 1 3.8573 0.9370 -1.0408 38 1 5.1576 2.8908 -0.2660 39 1 3.6210 3.4144 -0.9967 40 1 4.1576 1.8780 2.3719 41 1 5.5025 3.0268 2.1724 42 1 4.1441 3.4256 3.2511 43 1 0.9454 4.9639 -0.6416 44 1 -0.3498 4.0326 -1.4339 45 1 -0.4023 7.0062 -0.7372 46 1 -0.3132 6.2995 -2.3687 47 1 -2.6309 6.9821 -1.8463 48 1 -2.5227 5.2127 -2.0044 49 1 -4.8685 5.5259 3.1192 50 1 -2.6144 3.7549 0.0680 51 1 -2.5327 4.5353 1.6685 52 1 1.9913 1.5401 2.1547 53 1 0.5495 2.2168 1.3542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328252241.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:37 Heat of formation + Delta-G solvation = -109.934118 kcal Electronic energy + Delta-G solvation = -32043.559745 eV Core-core repulsion = 28106.286437 eV Total energy + Delta-G solvation = -3937.273308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.26057 -40.50073 -39.09466 -38.45043 -35.76602 -35.35949 -34.08322 -33.53855 -31.68281 -31.16937 -28.64978 -27.73474 -26.90104 -25.99459 -24.90503 -23.78619 -23.51705 -21.83508 -21.41346 -20.36160 -19.60295 -19.03245 -18.26755 -18.01336 -17.57229 -16.58681 -16.30637 -16.08539 -15.90083 -15.70401 -15.34229 -15.27936 -15.17363 -14.72093 -14.60891 -14.51235 -14.39308 -14.02222 -13.94362 -13.78527 -13.64784 -13.31747 -13.11585 -12.92882 -12.92064 -12.76253 -12.63743 -12.35146 -12.34068 -12.24871 -11.97100 -11.89858 -11.79663 -11.72136 -11.58837 -11.27266 -11.22073 -11.13184 -10.99821 -10.60041 -10.51304 -9.87300 -9.65423 -8.12916 -6.30051 0.92667 1.09585 1.38836 1.41934 1.44576 1.54248 2.29431 2.42177 3.07203 3.16919 3.59977 3.79084 3.84460 3.86159 3.97823 4.03814 4.10405 4.21902 4.22558 4.35433 4.40556 4.46997 4.53407 4.56619 4.60790 4.63118 4.68133 4.72952 4.73923 4.81339 4.97480 5.00930 5.04221 5.07226 5.08675 5.14372 5.15164 5.18966 5.19752 5.21075 5.26462 5.38175 5.39267 5.41168 5.47988 5.56451 5.58332 5.83211 5.91899 5.94785 6.25432 6.29819 6.61741 6.78451 6.86580 7.40738 8.91502 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.003613 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.991697 B = 7748.169167 C = 8150.734407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.107 4.107 3 C -0.096 4.096 4 H 0.072 0.928 5 C -0.110 4.110 6 C -0.120 4.120 7 C 0.124 3.876 8 H 0.082 0.918 9 C -0.157 4.157 10 N -0.579 5.579 11 C 0.524 3.476 12 O -0.552 6.552 13 C 0.499 3.501 14 O -0.565 6.565 15 N -0.583 5.583 16 C 0.107 3.893 17 C -0.127 4.127 18 C -0.102 4.102 19 C 0.035 3.965 20 H -0.018 1.018 21 C -0.531 4.531 22 H 0.067 0.933 23 C 0.009 3.991 24 N -0.919 5.919 25 Si 0.960 3.040 26 H -0.258 1.258 27 H -0.281 1.281 28 H -0.286 1.286 29 C 0.126 3.874 30 C 0.104 3.896 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.035 0.965 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.041 0.959 46 H 0.109 0.891 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.260 0.740 50 H 0.056 0.944 51 H 0.078 0.922 52 H 0.085 0.915 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.669 -13.417 -10.190 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.145 4.145 3 C -0.115 4.115 4 H 0.091 0.909 5 C -0.147 4.147 6 C -0.158 4.158 7 C 0.023 3.977 8 H 0.100 0.900 9 C -0.215 4.215 10 N -0.312 5.312 11 C 0.306 3.694 12 O -0.430 6.430 13 C 0.282 3.718 14 O -0.444 6.444 15 N -0.315 5.315 16 C -0.014 4.014 17 C -0.165 4.165 18 C -0.140 4.140 19 C 0.016 3.984 20 H 0.000 1.000 21 C -0.569 4.569 22 H 0.085 0.915 23 C -0.190 4.190 24 N -0.557 5.557 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.207 1.207 28 H -0.212 1.212 29 C 0.005 3.995 30 C -0.018 4.018 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.059 0.941 46 H 0.127 0.873 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.096 0.904 52 H 0.104 0.896 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.641 -13.010 -9.406 25.367 hybrid contribution -1.632 0.626 1.050 2.039 sum 18.009 -12.383 -8.356 23.399 Atomic orbital electron populations 1.21862 0.96983 1.01903 1.01081 1.21480 0.94730 0.94624 1.03632 1.21570 0.97760 0.96692 0.95504 0.90911 1.21627 0.92878 0.96124 1.04075 1.21921 1.02982 0.96197 0.94713 1.21606 0.76798 1.01729 0.97557 0.89961 1.22131 1.01553 1.01489 0.96303 1.48335 1.08810 1.05973 1.68085 1.20184 0.87200 0.85213 0.76786 1.90732 1.73480 1.27705 1.51033 1.20632 0.88418 0.78039 0.84718 1.90772 1.73756 1.49616 1.30243 1.48578 1.08192 1.66839 1.07932 1.21992 0.96812 0.99483 0.83124 1.21913 0.96356 0.96225 1.02019 1.21503 0.94057 1.01532 0.96862 1.19031 0.94672 0.91852 0.92869 1.00010 1.21515 0.91767 1.50329 0.93335 0.91470 1.25918 1.03345 0.94562 0.95152 1.70101 1.37000 1.50208 0.98425 0.85473 0.79977 0.77400 0.78628 1.18156 1.20709 1.21189 1.22009 0.74632 0.99124 1.03769 1.22110 0.97549 0.81709 1.00446 0.91788 0.94800 0.92960 0.89408 0.90931 0.90222 0.89144 0.87726 0.91690 0.90620 0.88608 0.94549 0.90259 0.88138 0.94056 0.87298 0.92586 0.91326 0.93104 0.92547 0.90397 0.89644 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.67 71.98 0.70 -2.20 16 2 C -0.11 -1.37 5.41 30.59 0.17 -1.21 16 3 C -0.10 -1.45 2.34 -10.71 -0.03 -1.48 16 4 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 5 C -0.11 -1.10 4.96 30.62 0.15 -0.94 16 6 C -0.12 -1.47 5.55 30.67 0.17 -1.30 16 7 C 0.12 2.47 3.19 44.98 0.14 2.61 16 8 H 0.08 1.97 7.04 -2.39 -0.02 1.96 16 9 C -0.16 -2.51 9.03 71.98 0.65 -1.86 16 10 N -0.58 -15.57 2.68 -796.59 -2.13 -17.70 16 11 C 0.52 19.78 5.47 87.27 0.48 20.26 16 12 O -0.55 -23.73 16.53 -3.24 -0.05 -23.78 16 13 C 0.50 22.35 5.48 87.27 0.48 22.83 16 14 O -0.56 -30.32 16.50 -3.22 -0.05 -30.38 16 15 N -0.58 -24.43 2.97 -819.63 -2.43 -26.86 16 16 C 0.11 3.35 6.35 86.36 0.55 3.89 16 17 C -0.13 -4.06 6.08 30.67 0.19 -3.87 16 18 C -0.10 -3.93 5.10 30.62 0.16 -3.77 16 19 C 0.03 1.78 2.26 -11.32 -0.03 1.76 16 20 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 21 C -0.53 -28.98 8.56 25.60 0.22 -28.76 16 22 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 23 C 0.01 0.53 5.30 84.66 0.45 0.98 16 24 N -0.92 -56.25 11.41 21.45 0.24 -56.01 16 25 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 26 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 28 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 29 C 0.13 6.25 5.42 86.51 0.47 6.72 16 30 C 0.10 2.38 4.84 86.36 0.42 2.80 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 0.77 6.70 -2.39 -0.02 0.76 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.67 6.49 -2.39 -0.02 0.66 16 37 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 40 H 0.07 1.01 5.72 -2.39 -0.01 1.00 16 41 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 2.28 6.31 -2.39 -0.02 2.27 16 44 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 50 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 51 H 0.08 4.66 5.18 -2.39 -0.01 4.65 16 52 H 0.09 1.76 7.50 -2.39 -0.02 1.75 16 53 H 0.06 1.76 5.01 -2.38 -0.01 1.75 16 Total: -1.00 -76.77 400.38 3.81 -72.97 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.88 Total: 19.20 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 5.33 Total: 16.47 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -4.32 Total: -100.57 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.11 Total: -54.16 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -76.77 3.81 -72.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328252241.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.966 kcal (2) G-P(sol) polarization free energy of solvation -76.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds