Wall clock time and date at job start Tue Mar 31 2020 20:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99784 * 2 1 4 4 C 1.53007 * 109.46789 * 119.99922 * 3 2 1 5 5 O 1.42897 * 109.47261 * 0.02562 * 3 2 1 6 6 C 1.52991 * 109.47568 * 239.99801 * 3 2 1 7 7 C 1.50701 * 109.46801 * 59.25243 * 6 3 2 8 8 O 1.21275 * 120.00200 * 354.35272 * 7 6 3 9 9 N 1.34783 * 119.99764 * 174.34579 * 7 6 3 10 10 C 1.46928 * 120.63941 * 180.02562 * 9 7 6 11 11 C 1.53192 * 108.77509 * 126.38185 * 10 9 7 12 12 C 1.53047 * 109.33311 * 54.63326 * 11 10 9 13 13 C 1.53028 * 109.43961 * 58.70572 * 12 11 10 14 14 C 1.53191 * 109.33481 * 181.22977 * 13 12 11 15 15 N 1.46937 * 108.78018 * 305.37914 * 14 13 12 16 16 C 1.36940 * 120.64164 * 233.61682 * 15 14 13 17 17 H 1.07997 * 120.00138 * 30.56363 * 16 15 14 18 18 C 1.38808 * 119.99784 * 210.56460 * 16 15 14 19 19 N 1.31616 * 120.00200 * 196.97270 * 18 16 15 20 20 Si 1.86808 * 120.00185 * 16.97431 * 18 16 15 21 21 H 1.48497 * 109.46996 * 273.22462 * 20 18 16 22 22 H 1.48496 * 109.46919 * 33.22152 * 20 18 16 23 23 H 1.48500 * 109.47125 * 153.22388 * 20 18 16 24 24 C 1.46929 * 118.71092 * 53.89085 * 15 14 13 25 25 C 1.53045 * 109.38887 * 178.73293 * 12 11 10 26 26 C 1.53031 * 109.54909 * 298.69223 * 12 11 10 27 27 C 1.46923 * 120.64411 * 0.02562 * 9 7 6 28 28 H 1.08003 * 119.99506 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.00100 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00107 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47096 * 184.00278 * 4 3 2 32 32 H 1.09003 * 109.47220 * 304.00749 * 4 3 2 33 33 H 1.09002 * 109.46704 * 64.00496 * 4 3 2 34 34 H 0.96703 * 114.00060 * 300.00074 * 5 3 2 35 35 H 1.09003 * 109.47414 * 299.25708 * 6 3 2 36 36 H 1.08999 * 109.47274 * 179.25220 * 6 3 2 37 37 H 1.09000 * 109.58848 * 6.59308 * 10 9 7 38 38 H 1.08997 * 109.58669 * 246.16469 * 10 9 7 39 39 H 1.08999 * 109.49282 * 294.67612 * 11 10 9 40 40 H 1.08996 * 109.49486 * 174.59190 * 11 10 9 41 41 H 1.09001 * 109.49321 * 61.27382 * 13 12 11 42 42 H 1.09001 * 109.49685 * 301.18957 * 13 12 11 43 43 H 1.09002 * 109.58782 * 185.58697 * 14 13 12 44 44 H 1.09000 * 109.70409 * 65.23188 * 14 13 12 45 45 H 0.97000 * 120.00523 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.58664 * 65.88444 * 24 15 14 47 47 H 1.09001 * 109.58225 * 186.30949 * 24 15 14 48 48 H 1.08996 * 109.49694 * 298.67806 * 25 12 11 49 49 H 1.08998 * 109.49327 * 58.76897 * 25 12 11 50 50 H 1.08997 * 109.49311 * 181.25762 * 26 12 11 51 51 H 1.08998 * 109.49182 * 301.34483 * 26 12 11 52 52 H 1.09001 * 109.58813 * 353.40694 * 27 9 7 53 53 H 1.09002 * 109.58744 * 113.68136 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1349 2.3913 0.0006 6 6 2.9431 1.3863 -1.2491 7 6 2.0785 1.2880 -2.4795 8 8 0.8919 1.0628 -2.3704 9 7 2.6241 1.4506 -3.7012 10 6 1.7943 1.3582 -4.9102 11 6 1.9963 2.6267 -5.7450 12 6 3.4893 2.8192 -6.0209 13 6 4.0325 1.5950 -6.7612 14 6 5.5332 1.7766 -7.0089 15 7 5.7461 3.0498 -7.7110 16 6 6.4524 3.0907 -8.8835 17 1 6.4391 2.2424 -9.5517 18 6 7.1853 4.2224 -9.2131 19 7 7.5842 4.4101 -10.4532 20 14 7.6057 5.4792 -7.8964 21 1 6.4939 6.4556 -7.7712 22 1 7.8056 4.7875 -6.5977 23 1 8.8517 6.1936 -8.2738 24 6 5.1918 4.2789 -7.1273 25 6 3.6900 4.0688 -6.8815 26 6 4.2373 2.9875 -4.6965 27 6 4.0601 1.7236 -3.8498 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 3.4335 2.3590 1.2860 32 1 2.3250 1.2571 2.1379 33 1 3.6974 0.6001 1.2141 34 1 0.5432 2.4034 -0.7642 35 1 3.6603 0.5655 -1.2425 36 1 3.4780 2.3361 -1.2558 37 1 0.7452 1.2701 -4.6275 38 1 2.0925 0.4864 -5.4924 39 1 1.6137 3.4877 -5.1969 40 1 1.4614 2.5295 -6.6897 41 1 3.5166 1.4885 -7.7155 42 1 3.8689 0.7025 -6.1572 43 1 5.9046 0.9550 -7.6215 44 1 6.0638 1.7913 -6.0569 45 1 8.0961 5.2012 -10.6836 46 1 5.6929 4.4935 -6.1834 47 1 5.3378 5.1094 -7.8179 48 1 3.1775 3.9401 -7.8348 49 1 3.2825 4.9367 -6.3632 50 1 5.2971 3.1468 -4.8950 51 1 3.8347 3.8453 -4.1579 52 1 4.5066 1.8766 -2.8673 53 1 4.5432 0.8803 -4.3433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328503447.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:20 Heat of formation + Delta-G solvation = -61.172422 kcal Electronic energy + Delta-G solvation = -31431.037002 eV Core-core repulsion = 27495.878160 eV Total energy + Delta-G solvation = -3935.158842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.85985 -40.61121 -38.74139 -37.31626 -35.14058 -33.95300 -33.49479 -32.46327 -31.98081 -31.78896 -29.89006 -28.87240 -26.44816 -25.09208 -24.37073 -23.73354 -23.23611 -22.28538 -20.80487 -20.33867 -19.21715 -18.56935 -18.09236 -17.58207 -17.29992 -17.10259 -16.54019 -16.01973 -15.84373 -15.64057 -15.41371 -15.30410 -15.20097 -15.10377 -14.45425 -14.31713 -14.21671 -13.82983 -13.58975 -13.47363 -13.38993 -13.22534 -13.03708 -12.95217 -12.85255 -12.82472 -12.60226 -12.42334 -12.22381 -12.11024 -12.01242 -11.91305 -11.80227 -11.59156 -11.30154 -11.09904 -11.06482 -10.99218 -10.77747 -10.61098 -9.97999 -9.53822 -8.80120 -8.14675 -5.49509 1.30982 1.41063 1.50496 1.50810 1.65811 2.04182 2.43076 3.10665 3.32855 3.39192 3.49395 3.72127 3.76145 3.83388 3.85273 3.89934 4.14974 4.16786 4.35581 4.37749 4.42664 4.43963 4.45704 4.53768 4.56852 4.61820 4.67058 4.70090 4.73171 4.77431 4.87940 4.89677 4.90191 4.96083 4.98828 5.06050 5.08447 5.12088 5.15787 5.25175 5.30095 5.31851 5.37146 5.42022 5.56644 5.67913 5.75131 5.92144 5.96715 6.15924 6.44556 6.71617 6.96983 7.20264 7.66245 8.07456 9.05741 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.002806 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.362990 B = 9977.315314 C =10439.117238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.187 4.187 3 C 0.169 3.831 4 C -0.134 4.134 5 O -0.576 6.576 6 C -0.163 4.163 7 C 0.512 3.488 8 O -0.569 6.569 9 N -0.604 5.604 10 C 0.116 3.884 11 C -0.113 4.113 12 C -0.043 4.043 13 C -0.115 4.115 14 C 0.143 3.857 15 N -0.619 5.619 16 C -0.245 4.245 17 H 0.046 0.954 18 C -0.039 4.039 19 N -0.964 5.964 20 Si 0.953 3.047 21 H -0.273 1.273 22 H -0.256 1.256 23 H -0.316 1.316 24 C 0.119 3.881 25 C -0.116 4.116 26 C -0.126 4.126 27 C 0.107 3.893 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.381 0.619 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.260 0.740 46 H 0.039 0.961 47 H 0.042 0.958 48 H 0.048 0.952 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.068 0.932 52 H 0.109 0.891 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.892 -7.896 23.372 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.205 4.205 3 C 0.128 3.872 4 C -0.191 4.191 5 O -0.386 6.386 6 C -0.202 4.202 7 C 0.302 3.698 8 O -0.450 6.450 9 N -0.336 5.336 10 C -0.007 4.007 11 C -0.151 4.151 12 C -0.043 4.043 13 C -0.153 4.153 14 C 0.019 3.981 15 N -0.344 5.344 16 C -0.375 4.375 17 H 0.064 0.936 18 C -0.233 4.233 19 N -0.610 5.610 20 Si 0.782 3.218 21 H -0.200 1.200 22 H -0.180 1.180 23 H -0.245 1.245 24 C -0.005 4.005 25 C -0.155 4.155 26 C -0.164 4.164 27 C -0.015 4.015 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.139 0.861 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.232 0.768 35 H 0.147 0.853 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.089 0.911 50 H 0.092 0.908 51 H 0.087 0.913 52 H 0.127 0.873 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.123 -7.812 23.880 27.477 hybrid contribution 0.158 0.724 -1.219 1.427 sum -10.965 -7.088 22.661 26.153 Atomic orbital electron populations 1.23633 0.96498 1.01400 0.98848 1.23423 0.96728 0.98525 1.01797 1.20080 0.88071 0.84499 0.94561 1.21750 0.98781 1.03715 0.94815 1.86436 1.51388 1.49846 1.50892 1.22506 0.99583 1.06838 0.91294 1.21034 0.88440 0.75308 0.85033 1.90651 1.17296 1.50527 1.86508 1.48201 1.09889 1.69822 1.05673 1.21548 0.96033 0.97893 0.85211 1.21874 0.95345 0.97876 0.99991 1.20333 0.94868 0.94618 0.94510 1.22011 0.96170 0.97619 0.99516 1.21147 0.94875 0.86770 0.95305 1.44444 1.61527 1.03868 1.24544 1.18842 1.21492 1.02007 0.95142 0.93619 1.26029 0.98432 1.00906 0.97953 1.69948 1.42584 1.29675 1.18832 0.85860 0.76012 0.79192 0.80699 1.20000 1.18030 1.24478 1.21538 0.93879 0.88956 0.96169 1.22023 0.95978 0.98160 0.99340 1.21998 1.01180 0.98280 0.94896 1.21940 0.79795 0.97737 1.02059 0.88367 0.89339 0.86066 0.91323 0.92253 0.88646 0.76776 0.85338 0.86781 0.90074 0.90718 0.91854 0.90801 0.93573 0.89719 0.93541 0.93755 0.93103 0.94300 0.93982 0.93312 0.91104 0.90775 0.91329 0.87332 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 12.57 67.78 0.85 -2.37 16 2 C -0.19 -3.19 7.43 25.65 0.19 -3.00 16 3 C 0.17 2.70 1.08 -11.54 -0.01 2.69 16 4 C -0.13 -1.59 8.82 71.98 0.64 -0.96 16 5 O -0.58 -12.30 11.92 -133.86 -1.60 -13.89 16 6 C -0.16 -2.11 3.40 29.85 0.10 -2.01 16 7 C 0.51 9.56 7.18 87.66 0.63 10.19 16 8 O -0.57 -13.71 11.37 12.10 0.14 -13.57 16 9 N -0.60 -10.64 2.97 -818.98 -2.43 -13.07 16 10 C 0.12 2.24 5.97 86.36 0.52 2.75 16 11 C -0.11 -2.36 4.90 30.67 0.15 -2.21 16 12 C -0.04 -1.05 0.51 -52.13 -0.03 -1.08 16 13 C -0.11 -3.07 4.15 30.67 0.13 -2.94 16 14 C 0.14 4.93 6.04 86.36 0.52 5.45 16 15 N -0.62 -27.44 2.74 -698.23 -1.91 -29.35 16 16 C -0.24 -13.65 10.04 84.03 0.84 -12.81 16 17 H 0.05 2.83 8.06 -2.91 -0.02 2.80 16 18 C -0.04 -2.26 5.28 84.86 0.45 -1.81 16 19 N -0.96 -60.70 13.97 21.65 0.30 -60.39 16 20 Si 0.95 45.80 24.30 68.60 1.67 47.47 16 21 H -0.27 -12.39 6.40 99.48 0.64 -11.75 16 22 H -0.26 -11.44 6.83 99.48 0.68 -10.76 16 23 H -0.32 -15.60 7.11 99.48 0.71 -14.89 16 24 C 0.12 4.71 3.74 86.51 0.32 5.03 16 25 C -0.12 -3.60 4.92 30.82 0.15 -3.45 16 26 C -0.13 -2.59 4.14 30.66 0.13 -2.46 16 27 C 0.11 1.63 5.87 86.35 0.51 2.14 16 28 H 0.10 1.68 8.06 -2.91 -0.02 1.66 16 29 H 0.09 1.88 6.41 -2.91 -0.02 1.86 16 30 H 0.12 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.38 8.44 5.86 -74.06 -0.43 8.01 16 35 H 0.13 1.03 8.12 -2.39 -0.02 1.02 16 36 H 0.11 1.25 7.40 -2.39 -0.02 1.23 16 37 H 0.08 1.74 7.01 -2.39 -0.02 1.72 16 38 H 0.07 1.38 6.67 -2.39 -0.02 1.37 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 1.81 4.99 -2.39 -0.01 1.80 16 43 H 0.05 1.70 7.93 -2.39 -0.02 1.68 16 44 H 0.04 1.36 6.74 -2.39 -0.02 1.34 16 45 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 46 H 0.04 1.45 5.63 -2.39 -0.01 1.43 16 47 H 0.04 1.91 4.48 -2.39 -0.01 1.90 16 48 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.07 1.78 4.98 -2.39 -0.01 1.77 16 51 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.11 1.11 5.89 -2.39 -0.01 1.09 16 53 H 0.08 1.21 6.74 -2.39 -0.02 1.20 16 Total: -1.00 -69.93 378.23 2.62 -67.30 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.37 Total: 22.35 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 6.08 Total: -6.84 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -4.04 Total: -102.81 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -1.46 Total: -27.47 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.67 Total: 47.47 kcal Total: -69.93 2.62 -67.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328503447.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.131 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds