Wall clock time and date at job start Tue Mar 31 2020 20:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47628 * 2 1 4 4 C 1.50705 * 109.47432 * 239.99535 * 2 1 3 5 5 H 1.07997 * 120.00569 * 240.00816 * 4 2 1 6 6 C 1.37886 * 119.99306 * 60.00249 * 4 2 1 7 7 N 1.31510 * 120.00027 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99454 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47612 * 60.00076 * 8 6 4 10 10 H 1.48500 * 109.46831 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47327 * 299.99946 * 8 6 4 12 12 C 1.53007 * 109.47077 * 120.00025 * 2 1 3 13 13 N 1.46498 * 109.46876 * 300.00006 * 12 2 1 14 14 C 1.34776 * 119.99857 * 180.02562 * 13 12 2 15 15 O 1.21350 * 120.00198 * 359.97438 * 14 13 12 16 16 C 1.49456 * 119.99918 * 179.97438 * 14 13 12 17 17 O 1.21349 * 119.99708 * 354.40556 * 16 14 13 18 18 N 1.34770 * 119.99631 * 174.39679 * 16 14 13 19 19 C 1.46505 * 119.99599 * 188.16234 * 18 16 14 20 20 C 1.52995 * 117.49972 * 16.27558 * 19 18 16 21 21 C 1.52998 * 117.50175 * 307.61327 * 19 18 16 22 22 C 1.46500 * 120.00586 * 8.17042 * 18 16 14 23 23 C 1.52994 * 109.46885 * 294.63477 * 22 18 16 24 24 C 1.53004 * 109.47175 * 179.97438 * 23 22 18 25 25 C 1.52993 * 109.47019 * 300.00043 * 24 23 22 26 26 C 1.53002 * 109.47413 * 59.99943 * 25 24 23 27 27 C 1.52995 * 109.46954 * 299.99828 * 26 25 24 28 28 H 1.08999 * 109.47059 * 300.00337 * 1 2 3 29 29 H 1.09001 * 109.46723 * 60.00229 * 1 2 3 30 30 H 1.09003 * 109.47162 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47221 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46881 * 299.99674 * 3 2 1 33 33 H 1.08999 * 109.47176 * 59.99734 * 3 2 1 34 34 H 0.97000 * 119.99242 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.46905 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.46681 * 59.99963 * 12 2 1 37 37 H 0.96997 * 120.00089 * 359.97438 * 13 12 2 38 38 H 1.09006 * 115.55012 * 161.94323 * 19 18 16 39 39 H 1.08998 * 117.50005 * 359.97438 * 20 19 18 40 40 H 1.08997 * 117.50029 * 145.02016 * 20 19 18 41 41 H 1.09002 * 117.49716 * 214.97945 * 21 19 18 42 42 H 1.09001 * 117.49780 * 359.97029 * 21 19 18 43 43 H 1.09001 * 109.47623 * 174.63523 * 22 18 16 44 44 H 1.09001 * 109.47491 * 299.99907 * 23 22 18 45 45 H 1.09004 * 109.47670 * 59.99805 * 23 22 18 46 46 H 1.09004 * 109.47051 * 180.02562 * 24 23 22 47 47 H 1.08992 * 109.47087 * 60.00138 * 24 23 22 48 48 H 1.09004 * 109.47404 * 299.99633 * 25 24 23 49 49 H 1.08996 * 109.47046 * 180.02562 * 25 24 23 50 50 H 1.08999 * 109.46869 * 180.02562 * 26 25 24 51 51 H 1.09001 * 109.46822 * 59.99951 * 26 25 24 52 52 H 1.09001 * 109.47463 * 300.00291 * 27 26 25 53 53 H 1.08994 * 109.47442 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5204 -4.0077 10 1 1.8261 -0.4207 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5753 -1.4774 3.7809 16 6 1.3799 0.2141 4.8898 17 8 0.7683 1.2565 4.7812 18 7 1.6102 -0.3081 6.1106 19 6 0.9738 0.2812 7.2913 20 6 -0.2140 1.2175 7.0604 21 6 1.1358 1.7877 7.5033 22 6 2.4970 -1.4650 6.2572 23 6 1.8728 -2.6772 5.5632 24 6 2.7993 -3.8853 5.7156 25 6 4.1538 -3.5731 5.0764 26 6 4.7781 -2.3608 5.7705 27 6 3.8517 -1.1528 5.6180 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 0.7089 1.1611 -3.4844 35 1 3.1299 -0.7217 1.2490 36 1 1.6766 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 0.9504 -0.3522 8.1782 39 1 -0.5217 1.3953 6.0300 40 1 -1.0186 1.2004 7.7954 41 1 1.2185 2.1455 8.5296 42 1 1.7162 2.3404 6.7645 43 1 2.6364 -1.6843 7.3158 44 1 0.9076 -2.8994 6.0182 45 1 1.7335 -2.4580 4.5045 46 1 2.3548 -4.7488 5.2208 47 1 2.9390 -4.1047 6.7741 48 1 4.0141 -3.3537 4.0179 49 1 4.8136 -4.4338 5.1847 50 1 5.7428 -2.1382 5.3147 51 1 4.9177 -2.5803 6.8290 52 1 3.7119 -0.9334 4.5595 53 1 4.2961 -0.2893 6.1128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328961887.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:53 Heat of formation + Delta-G solvation = 8.662782 kcal Electronic energy + Delta-G solvation = -31800.215102 eV Core-core repulsion = 27868.084541 eV Total energy + Delta-G solvation = -3932.130561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.73657 -40.27005 -39.37880 -37.99331 -37.24906 -35.14817 -34.62133 -32.73534 -31.59218 -29.89620 -27.97197 -27.58547 -27.22879 -25.72199 -23.66786 -23.48057 -23.21237 -22.93047 -21.42051 -20.53114 -19.83097 -18.92682 -17.95934 -17.65274 -17.53928 -17.22291 -16.58804 -16.51898 -16.13889 -15.74385 -15.44429 -15.18478 -14.89607 -14.76157 -14.62558 -14.42484 -13.99001 -13.85369 -13.65791 -13.58474 -13.24583 -13.09643 -12.95996 -12.79680 -12.73651 -12.61700 -12.31726 -12.27117 -12.12805 -12.08464 -11.72243 -11.61644 -11.46926 -11.26181 -11.22290 -11.06213 -10.97347 -10.73847 -10.65575 -10.37091 -10.07509 -9.48456 -9.37908 -8.00264 -6.16729 0.31762 1.33426 1.46340 1.47943 1.53977 2.07676 2.41298 2.52695 2.96272 3.23805 3.36132 3.77208 3.90035 3.95044 4.06724 4.10929 4.14509 4.33255 4.37852 4.49007 4.51282 4.56107 4.61675 4.69438 4.71792 4.73604 4.82066 4.83224 4.94825 4.99830 5.03238 5.04629 5.08733 5.17821 5.18299 5.19359 5.28857 5.36103 5.39191 5.46035 5.50883 5.54502 5.64434 5.65206 5.68324 5.81132 5.92409 6.01564 6.11674 6.20580 6.35827 6.42286 6.76723 6.88364 7.07353 7.51354 8.98655 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.003481 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.227296 B = 8040.785418 C = 9477.852030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.525 4.525 5 H 0.053 0.947 6 C 0.027 3.973 7 N -0.902 5.902 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.148 3.852 13 N -0.681 5.681 14 C 0.454 3.546 15 O -0.464 6.464 16 C 0.509 3.491 17 O -0.536 6.536 18 N -0.552 5.552 19 C 0.064 3.936 20 C -0.197 4.197 21 C -0.181 4.181 22 C 0.162 3.838 23 C -0.173 4.173 24 C -0.098 4.098 25 C -0.115 4.115 26 C -0.097 4.097 27 C -0.177 4.177 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.259 0.741 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.408 0.592 38 H 0.165 0.835 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.048 0.952 45 H 0.115 0.885 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.050 0.950 49 H 0.063 0.937 50 H 0.056 0.944 51 H 0.068 0.932 52 H 0.116 0.884 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 -4.515 22.035 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.563 4.563 5 H 0.071 0.929 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.773 3.227 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.025 3.975 13 N -0.332 5.332 14 C 0.239 3.761 15 O -0.345 6.345 16 C 0.293 3.707 17 O -0.414 6.414 18 N -0.282 5.282 19 C -0.039 4.039 20 C -0.234 4.234 21 C -0.219 4.219 22 C 0.061 3.939 23 C -0.210 4.210 24 C -0.136 4.136 25 C -0.153 4.153 26 C -0.135 4.135 27 C -0.214 4.214 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.245 0.755 38 H 0.182 0.818 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.067 0.933 45 H 0.132 0.868 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.075 0.925 51 H 0.087 0.913 52 H 0.133 0.867 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.290 -4.545 21.896 22.480 hybrid contribution 0.008 0.159 -1.288 1.298 sum 2.298 -4.386 20.608 21.194 Atomic orbital electron populations 1.21683 0.97534 0.98769 0.99961 1.18364 0.92970 0.92862 0.90808 1.21684 0.98102 0.98231 0.99946 1.21221 1.31729 1.12258 0.91112 0.92901 1.25490 0.95133 0.95545 1.01143 1.69927 1.37031 1.23460 1.23597 0.85802 0.78667 0.78811 0.79431 1.20047 1.21307 1.20078 1.21480 0.97849 0.95376 0.82774 1.46026 1.50994 1.31312 1.04918 1.20178 0.84404 0.86352 0.85185 1.90378 1.34362 1.24115 1.85603 1.20142 0.80562 0.84920 0.85095 1.90625 1.41053 1.22968 1.86786 1.47510 1.45087 1.31272 1.04370 1.22201 1.00380 0.91951 0.89336 1.23688 0.92435 1.02671 1.04610 1.23261 1.00207 0.95483 1.02939 1.21242 0.88438 0.83308 1.00935 1.23100 0.97797 0.94304 1.05840 1.21285 0.95063 0.96577 1.00708 1.21463 0.96411 0.97478 0.99907 1.21273 0.97504 0.94217 1.00552 1.23173 0.93983 0.98174 1.06079 0.95433 0.92047 0.95777 0.95858 0.92043 0.95461 0.93149 0.92636 0.92535 0.75528 0.81769 0.87926 0.86580 0.85808 0.91018 0.87781 0.93339 0.86850 0.92445 0.91295 0.93167 0.91813 0.92534 0.91326 0.86734 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.08 71.98 0.58 -4.91 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.53 8.08 71.98 0.58 -4.94 16 4 C -0.52 -26.83 8.01 25.60 0.21 -26.63 16 5 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 6 C 0.03 1.38 5.15 84.66 0.44 1.82 16 7 N -0.90 -48.25 9.35 21.45 0.20 -48.05 16 8 Si 0.95 41.90 29.54 68.60 2.03 43.92 16 9 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.15 5.83 4.50 86.38 0.39 6.22 16 13 N -0.68 -23.69 4.95 -464.40 -2.30 -25.98 16 14 C 0.45 14.44 6.55 87.27 0.57 15.01 16 15 O -0.46 -14.38 6.31 -3.25 -0.02 -14.40 16 16 C 0.51 15.19 7.04 87.27 0.61 15.81 16 17 O -0.54 -17.90 12.23 -3.24 -0.04 -17.94 16 18 N -0.55 -13.08 2.79 -775.59 -2.16 -15.25 16 19 C 0.06 1.22 6.56 44.99 0.30 1.51 16 20 C -0.20 -4.11 9.63 30.62 0.29 -3.81 16 21 C -0.18 -3.53 9.87 30.62 0.30 -3.23 16 22 C 0.16 3.42 2.56 44.99 0.12 3.53 16 23 C -0.17 -3.94 4.94 30.59 0.15 -3.79 16 24 C -0.10 -1.93 5.92 30.59 0.18 -1.75 16 25 C -0.12 -2.45 5.69 30.59 0.17 -2.28 16 26 C -0.10 -1.96 5.92 30.59 0.18 -1.78 16 27 C -0.18 -4.16 4.79 30.59 0.15 -4.01 16 28 H 0.03 1.09 6.86 -2.39 -0.02 1.08 16 29 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 30 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 33 H 0.03 1.09 6.86 -2.39 -0.02 1.08 16 34 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.41 14.42 5.65 -92.71 -0.52 13.89 16 38 H 0.17 1.97 8.05 -2.38 -0.02 1.95 16 39 H 0.10 2.89 5.29 -2.94 -0.02 2.87 16 40 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 1.82 7.54 -2.39 -0.02 1.80 16 43 H 0.10 1.69 7.86 -2.39 -0.02 1.67 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.12 3.29 3.77 -5.38 -0.02 3.27 16 46 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.05 1.34 7.05 -2.38 -0.02 1.32 16 49 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.12 3.39 3.64 -5.36 -0.02 3.37 16 53 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -55.02 386.88 3.26 -51.76 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: 0.36 Total: 36.89 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 5.19 Total: -10.96 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -4.26 Total: -89.28 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.06 Total: -32.34 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -55.02 3.26 -51.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328961887.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.421 kcal (2) G-P(sol) polarization free energy of solvation -55.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds