Wall clock time and date at job start Tue Mar 31 2020 21:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47121 * 2 1 4 4 H 1.09004 * 109.47127 * 55.00161 * 3 2 1 5 5 C 1.52998 * 109.47418 * 294.99934 * 3 2 1 6 6 C 1.52992 * 109.47096 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47478 * 60.00055 * 6 5 3 8 8 C 1.52998 * 109.46912 * 300.00058 * 7 6 5 9 9 H 1.09004 * 109.47157 * 299.99594 * 8 7 6 10 10 N 1.46494 * 109.47266 * 179.97438 * 8 7 6 11 11 C 1.34784 * 120.00165 * 84.99609 * 10 8 7 12 12 O 1.21344 * 119.99870 * 0.02562 * 11 10 8 13 13 C 1.49449 * 119.99773 * 180.02562 * 11 10 8 14 14 O 1.21341 * 120.00646 * 6.74499 * 13 11 10 15 15 N 1.34783 * 119.99445 * 186.74617 * 13 11 10 16 16 C 1.46925 * 120.63018 * 8.42630 * 15 13 11 17 17 C 1.53625 * 108.54188 * 126.37300 * 16 15 13 18 18 C 1.53035 * 109.24375 * 54.85015 * 17 16 15 19 19 C 1.50701 * 109.45773 * 178.49096 * 18 17 16 20 20 H 1.08001 * 120.00032 * 120.07316 * 19 18 17 21 21 C 1.37874 * 120.00221 * 300.06923 * 19 18 17 22 22 N 1.31514 * 119.99803 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00093 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46912 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46946 * 119.99817 * 23 21 19 26 26 H 1.48493 * 109.47237 * 240.00188 * 23 21 19 27 27 C 1.53040 * 109.53960 * 298.51360 * 18 17 16 28 28 C 1.46929 * 120.62706 * 188.70711 * 15 13 11 29 29 C 1.53000 * 109.46774 * 174.99710 * 3 2 1 30 30 H 1.09000 * 109.47227 * 300.00046 * 1 2 3 31 31 H 1.09004 * 109.47111 * 60.00186 * 1 2 3 32 32 H 1.08997 * 109.47328 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46683 * 120.00136 * 2 1 3 34 34 H 1.09000 * 109.47227 * 239.99954 * 2 1 3 35 35 H 1.09004 * 109.46633 * 300.00211 * 5 3 2 36 36 H 1.09003 * 109.46870 * 59.99731 * 5 3 2 37 37 H 1.09007 * 109.47066 * 180.02562 * 6 5 3 38 38 H 1.08994 * 109.47489 * 299.99648 * 6 5 3 39 39 H 1.09004 * 109.46878 * 59.99823 * 7 6 5 40 40 H 1.08997 * 109.47450 * 179.97438 * 7 6 5 41 41 H 0.97002 * 120.00359 * 264.99953 * 10 8 7 42 42 H 1.08998 * 109.58213 * 246.20049 * 16 15 13 43 43 H 1.08998 * 109.59005 * 6.62680 * 16 15 13 44 44 H 1.09000 * 109.63170 * 294.85917 * 17 16 15 45 45 H 1.08993 * 109.43036 * 174.72464 * 17 16 15 46 46 H 1.09000 * 109.46020 * 58.53529 * 18 17 16 47 47 H 0.97007 * 119.99438 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.49847 * 301.41143 * 27 18 17 49 49 H 1.09007 * 109.49360 * 181.32115 * 27 18 17 50 50 H 1.09000 * 109.58661 * 353.36916 * 28 15 13 51 51 H 1.08997 * 109.58419 * 113.65542 * 28 15 13 52 52 H 1.08997 * 109.47410 * 300.00197 * 29 3 2 53 53 H 1.08994 * 109.47335 * 60.00617 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 2.1459 3.5688 -1.3075 7 6 3.6707 3.5701 -1.1821 8 6 4.0754 2.8860 0.1253 9 1 3.6412 3.4253 0.9671 10 7 5.5355 2.8867 0.2451 11 6 6.1689 3.9589 0.7607 12 8 5.5297 4.9235 1.1260 13 6 7.6584 3.9597 0.8825 14 8 8.3066 3.0507 0.4071 15 7 8.2817 4.9702 1.5204 16 6 7.5096 5.9790 2.2585 17 6 8.0563 6.0603 3.6919 18 6 9.5614 6.3330 3.6429 19 6 10.0962 6.4505 5.0469 20 1 10.8626 5.7720 5.3914 21 6 9.6071 7.4242 5.8917 22 7 8.6735 8.2501 5.4725 23 14 10.2696 7.5693 7.6323 24 1 11.3057 6.5292 7.8559 25 1 10.8698 8.9142 7.8230 26 1 9.1605 7.3802 8.6015 27 6 10.2671 5.1816 2.9231 28 6 9.7459 5.0873 1.4857 29 6 3.5648 1.4442 0.1258 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.0700 1.5875 -2.1491 36 1 0.5490 2.1252 -1.3969 37 1 1.8571 4.0563 -2.2387 38 1 1.7116 4.1081 -0.4658 39 1 4.1050 3.0308 -2.0239 40 1 4.0345 4.5976 -1.1827 41 1 6.0465 2.1155 -0.0466 42 1 7.6129 6.9478 1.7697 43 1 6.4590 5.6897 2.2824 44 1 7.8741 5.1173 4.2073 45 1 7.5571 6.8692 4.2250 46 1 9.7445 7.2637 3.1058 47 1 8.3298 8.9354 6.0668 48 1 10.0641 4.2469 3.4458 49 1 11.3415 5.3652 2.9093 50 1 10.1713 4.2093 0.9997 51 1 10.0278 5.9835 0.9330 52 1 3.8532 0.9569 1.0571 53 1 3.9995 0.9053 -0.7160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329119823.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:52 Heat of formation + Delta-G solvation = -110.344723 kcal Electronic energy + Delta-G solvation = -30036.748666 eV Core-core repulsion = 26099.457553 eV Total energy + Delta-G solvation = -3937.291113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.07611 -40.46635 -39.26128 -38.57726 -36.18274 -35.26867 -33.99443 -33.03846 -31.74532 -31.10030 -29.66093 -28.33925 -26.24952 -24.77541 -24.22732 -23.80360 -23.11266 -21.83459 -21.45183 -20.84318 -20.29667 -18.71408 -18.34147 -18.06157 -17.18730 -16.90563 -16.52167 -16.34589 -15.83171 -15.67157 -15.41953 -15.30910 -14.87567 -14.80155 -14.63888 -14.58696 -14.37203 -14.29579 -13.97867 -13.70058 -13.42110 -13.25418 -13.16279 -12.84764 -12.60621 -12.50865 -12.36631 -12.29152 -12.19470 -12.16143 -12.04317 -11.97074 -11.70329 -11.53550 -11.37720 -11.22149 -11.08489 -11.02402 -10.97343 -10.46749 -10.32163 -10.00734 -9.69231 -8.08266 -6.22244 0.30622 1.29076 1.39746 1.42302 1.52879 2.08058 2.43211 2.46457 3.18158 3.25600 3.61821 3.75110 3.93753 4.09297 4.09423 4.17286 4.26079 4.29618 4.30994 4.43186 4.47519 4.48793 4.54118 4.55362 4.59461 4.72086 4.76282 4.80103 4.80456 4.88810 4.94505 5.07115 5.07828 5.13631 5.14299 5.17998 5.20755 5.25782 5.27088 5.34288 5.36990 5.37467 5.40927 5.48495 5.56837 5.62059 5.62488 5.95369 6.02700 6.09635 6.27669 6.37481 6.68402 6.88100 6.92433 7.45662 8.95544 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.002311 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.983469 B =12114.878157 C =12736.134652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.081 4.081 4 H 0.066 0.934 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.126 4.126 8 C 0.142 3.858 9 H 0.074 0.926 10 N -0.682 5.682 11 C 0.511 3.489 12 O -0.527 6.527 13 C 0.500 3.500 14 O -0.550 6.550 15 N -0.571 5.571 16 C 0.083 3.917 17 C -0.113 4.113 18 C 0.042 3.958 19 C -0.533 4.533 20 H 0.051 0.949 21 C 0.013 3.987 22 N -0.914 5.914 23 Si 0.952 3.048 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.282 1.282 27 C -0.113 4.113 28 C 0.111 3.889 29 C -0.116 4.116 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.418 0.582 42 H 0.059 0.941 43 H 0.129 0.871 44 H 0.024 0.976 45 H 0.076 0.924 46 H 0.003 0.997 47 H 0.261 0.739 48 H 0.044 0.956 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.079 0.921 52 H 0.070 0.930 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.589 -15.134 -15.505 26.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.100 4.100 4 H 0.085 0.915 5 C -0.149 4.149 6 C -0.152 4.152 7 C -0.165 4.165 8 C 0.039 3.961 9 H 0.093 0.907 10 N -0.334 5.334 11 C 0.292 3.708 12 O -0.405 6.405 13 C 0.283 3.717 14 O -0.430 6.430 15 N -0.303 5.303 16 C -0.038 4.038 17 C -0.151 4.151 18 C 0.024 3.976 19 C -0.571 4.571 20 H 0.069 0.931 21 C -0.186 4.186 22 N -0.554 5.554 23 Si 0.778 3.222 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.208 1.208 27 C -0.151 4.151 28 C -0.010 4.010 29 C -0.153 4.153 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.256 0.744 42 H 0.077 0.923 43 H 0.146 0.854 44 H 0.043 0.957 45 H 0.095 0.905 46 H 0.022 0.978 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.091 0.909 50 H 0.113 0.887 51 H 0.097 0.903 52 H 0.089 0.911 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.797 -14.779 -15.429 26.571 hybrid contribution 0.845 0.396 1.201 1.521 sum -14.952 -14.383 -14.228 25.157 Atomic orbital electron populations 1.21825 0.95502 1.01827 1.02027 1.21526 0.96209 0.95295 1.02343 1.21114 0.93386 0.96913 0.98620 0.91521 1.21653 1.01424 0.94585 0.97253 1.21478 0.93492 0.97850 1.02383 1.21894 0.97572 1.00108 0.96912 1.21251 0.77302 0.98683 0.98913 0.90741 1.45886 1.08726 1.17891 1.60942 1.20069 0.88089 0.83986 0.78630 1.90526 1.67640 1.34249 1.48108 1.20268 0.89053 0.82470 0.79923 1.90677 1.67455 1.35087 1.49787 1.48210 1.08322 1.25821 1.47925 1.22914 0.98574 0.90516 0.91841 1.21876 0.99360 0.99986 0.93902 1.18656 0.92074 0.92708 0.94188 1.21578 1.21299 1.15409 0.98776 0.93071 1.25713 0.95338 0.95430 1.02079 1.69988 1.28944 1.19315 1.37120 0.85599 0.78300 0.77899 0.80401 1.19357 1.20610 1.20764 1.21848 1.00165 0.99118 0.93934 1.21853 0.78100 1.02977 0.98073 1.21841 0.96666 0.93328 1.03508 0.93121 0.91997 0.92503 0.92101 0.91272 0.91086 0.90600 0.90795 0.92368 0.90642 0.93558 0.74398 0.92272 0.85407 0.95677 0.90540 0.97841 0.92979 0.93670 0.90933 0.88734 0.90320 0.91086 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.67 71.98 0.70 -0.69 16 2 C -0.12 -1.11 5.40 30.59 0.17 -0.95 16 3 C -0.08 -0.92 2.19 -10.80 -0.02 -0.94 16 4 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 5 C -0.11 -1.15 4.96 30.59 0.15 -1.00 16 6 C -0.11 -1.54 5.92 30.59 0.18 -1.36 16 7 C -0.13 -2.19 5.50 30.59 0.17 -2.02 16 8 C 0.14 2.66 2.45 44.98 0.11 2.77 16 9 H 0.07 1.71 7.58 -2.38 -0.02 1.69 16 10 N -0.68 -15.44 5.07 -443.95 -2.25 -17.69 16 11 C 0.51 15.68 7.71 87.27 0.67 16.35 16 12 O -0.53 -18.42 12.84 -3.23 -0.04 -18.46 16 13 C 0.50 17.30 7.73 87.27 0.67 17.98 16 14 O -0.55 -19.61 15.93 -3.22 -0.05 -19.66 16 15 N -0.57 -21.37 2.97 -819.65 -2.43 -23.80 16 16 C 0.08 3.36 6.01 86.51 0.52 3.88 16 17 C -0.11 -5.42 5.17 30.82 0.16 -5.26 16 18 C 0.04 2.10 2.06 -11.51 -0.02 2.08 16 19 C -0.53 -29.30 8.56 25.60 0.22 -29.08 16 20 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 21 C 0.01 0.72 5.30 84.65 0.45 1.17 16 22 N -0.91 -52.40 11.30 21.45 0.24 -52.16 16 23 Si 0.95 43.73 29.54 68.60 2.03 45.75 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 C -0.11 -4.64 5.30 30.67 0.16 -4.48 16 28 C 0.11 3.99 6.44 86.36 0.56 4.55 16 29 C -0.12 -1.51 4.67 30.58 0.14 -1.37 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.50 6.57 -2.39 -0.02 0.48 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.67 6.56 -2.39 -0.02 0.66 16 37 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.42 8.17 8.09 -92.71 -0.75 7.42 16 42 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.13 5.15 4.30 -48.54 -0.21 4.94 16 44 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.08 4.13 6.03 -2.39 -0.01 4.12 16 46 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 47 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 48 H 0.04 1.91 8.14 -2.39 -0.02 1.90 16 49 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 50 H 0.09 3.15 7.01 -2.39 -0.02 3.13 16 51 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 52 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -63.05 402.76 2.41 -60.64 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.06 Total: 23.74 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 4.98 Total: 1.63 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -4.44 Total: -93.65 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.09 Total: -38.12 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -63.05 2.41 -60.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329119823.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.705 kcal (2) G-P(sol) polarization free energy of solvation -63.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds