Wall clock time and date at job start Tue Mar 31 2020 19:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46944 * 2 1 4 4 C 1.52993 * 109.46870 * 119.99562 * 2 1 3 5 5 H 1.09001 * 109.52646 * 300.08382 * 4 2 1 6 6 C 1.53073 * 109.62200 * 60.11113 * 4 2 1 7 7 C 1.53044 * 109.65920 * 181.16987 * 6 4 2 8 8 C 1.53190 * 109.31005 * 298.69957 * 7 6 4 9 9 N 1.46927 * 108.77956 * 54.63799 * 8 7 6 10 10 C 1.34768 * 120.63424 * 126.41569 * 9 8 7 11 11 O 1.21354 * 120.00348 * 175.93165 * 10 9 8 12 12 C 1.49449 * 120.00201 * 355.92314 * 10 9 8 13 13 O 1.21351 * 119.99862 * 84.12373 * 12 10 9 14 14 N 1.34775 * 120.00023 * 264.12810 * 12 10 9 15 15 C 1.46925 * 120.63181 * 4.60803 * 14 12 10 16 16 C 1.52756 * 109.00824 * 233.58391 * 15 14 12 17 17 C 1.53043 * 109.38611 * 305.58957 * 16 15 14 18 18 C 1.53041 * 109.53670 * 61.23880 * 17 16 15 19 19 H 1.09004 * 109.52182 * 58.60421 * 18 17 16 20 20 C 1.50696 * 109.49605 * 178.68421 * 18 17 16 21 21 H 1.08005 * 120.00186 * 359.70473 * 20 18 17 22 22 C 1.37878 * 120.00290 * 179.71503 * 20 18 17 23 23 N 1.31517 * 119.99770 * 7.16496 * 22 20 18 24 24 Si 1.86797 * 120.00563 * 187.17539 * 22 20 18 25 25 H 1.48493 * 109.47412 * 94.98673 * 24 22 20 26 26 H 1.48497 * 109.47413 * 214.99135 * 24 22 20 27 27 H 1.48504 * 109.46789 * 334.98660 * 24 22 20 28 28 C 1.46931 * 120.62928 * 184.89222 * 14 12 10 29 29 C 1.46931 * 118.73281 * 306.38877 * 9 8 7 30 30 H 1.08994 * 109.47582 * 300.00820 * 1 2 3 31 31 H 1.09005 * 109.46858 * 60.00042 * 1 2 3 32 32 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47497 * 240.00117 * 2 1 3 34 34 H 1.09003 * 109.46798 * 299.99641 * 3 2 1 35 35 H 1.08998 * 109.46946 * 59.99212 * 3 2 1 36 36 H 1.08998 * 109.47169 * 179.97438 * 3 2 1 37 37 H 1.08991 * 109.34879 * 61.14399 * 6 4 2 38 38 H 1.09004 * 109.45033 * 301.25333 * 6 4 2 39 39 H 1.08994 * 109.49735 * 178.74817 * 7 6 4 40 40 H 1.09006 * 109.49954 * 58.64688 * 7 6 4 41 41 H 1.09003 * 109.58853 * 294.84456 * 8 7 6 42 42 H 1.09004 * 109.58778 * 174.42391 * 8 7 6 43 43 H 1.08998 * 109.58578 * 353.42275 * 15 14 12 44 44 H 1.09008 * 109.58420 * 113.84866 * 15 14 12 45 45 H 1.09005 * 109.56588 * 185.55157 * 16 15 14 46 46 H 1.08997 * 109.38564 * 65.51884 * 16 15 14 47 47 H 1.09001 * 109.45841 * 301.21550 * 17 16 15 48 48 H 1.09002 * 109.46042 * 181.25948 * 17 16 15 49 49 H 0.97002 * 120.00401 * 180.02562 * 23 22 20 50 50 H 1.08999 * 109.58285 * 246.15463 * 28 14 12 51 51 H 1.09000 * 109.58940 * 6.57543 * 28 14 12 52 52 H 1.09001 * 109.58371 * 173.39622 * 29 9 8 53 53 H 1.08994 * 109.58882 * 293.67878 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6758 -0.2088 2.1398 6 6 1.5338 -2.1658 1.2514 7 6 2.0193 -2.8795 2.5153 8 6 3.5509 -2.9039 2.5266 9 7 4.0470 -1.5284 2.3822 10 6 4.9215 -1.0169 3.2709 11 8 5.3804 0.0935 3.1004 12 6 5.3259 -1.8170 4.4667 13 8 6.2191 -2.6336 4.3765 14 7 4.6986 -1.6318 5.6451 15 6 3.5500 -0.7213 5.7467 16 6 3.8131 0.2892 6.8616 17 6 4.1404 -0.4574 8.1569 18 6 5.4030 -1.2990 7.9575 19 1 6.2310 -0.6511 7.6697 20 6 5.7427 -2.0084 9.2429 21 1 5.1233 -1.8691 10.1167 22 6 6.8444 -2.8352 9.3038 23 7 7.6776 -2.8963 8.2880 24 14 7.1537 -3.8687 10.8287 25 1 6.5872 -5.2268 10.6295 26 1 8.6155 -3.9724 11.0684 27 1 6.5041 -3.2285 12.0007 28 6 5.1543 -2.3318 6.8539 29 6 3.5719 -0.7215 1.2500 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 3.1300 1.4426 0.0005 37 1 1.9166 -2.6838 0.3722 38 1 0.4440 -2.1686 1.2287 39 1 1.6391 -3.9009 2.5250 40 1 1.6574 -2.3476 3.3952 41 1 3.9129 -3.5119 1.6975 42 1 3.9028 -3.3220 3.4698 43 1 3.4166 -0.1944 4.8018 44 1 2.6508 -1.2920 5.9793 45 1 2.9273 0.9065 7.0114 46 1 4.6555 0.9229 6.5842 47 1 3.3074 -1.1090 8.4209 48 1 4.3065 0.2622 8.9587 49 1 8.4525 -3.4782 8.3305 50 1 4.3887 -3.0364 7.1785 51 1 6.0792 -2.8672 6.6393 52 1 3.9375 0.3004 1.3508 53 1 3.9376 -1.1500 0.3169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329662960.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:33 Heat of formation + Delta-G solvation = -111.472241 kcal Electronic energy + Delta-G solvation = -31397.527949 eV Core-core repulsion = 27460.187943 eV Total energy + Delta-G solvation = -3937.340006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.19281 -40.44833 -39.12295 -38.46438 -36.52505 -35.35412 -33.59968 -33.39147 -31.76102 -31.10031 -28.52469 -27.80692 -26.93128 -26.05317 -24.78560 -23.72669 -23.46219 -22.02909 -20.99473 -20.64559 -19.72188 -19.00823 -18.25736 -18.04413 -17.60737 -16.59042 -16.32303 -16.07949 -15.86516 -15.51919 -15.40493 -15.32258 -15.01402 -14.90662 -14.69346 -14.54964 -14.44841 -14.09980 -13.99490 -13.85083 -13.66541 -13.35208 -12.91524 -12.88562 -12.80184 -12.65740 -12.50697 -12.34956 -12.30668 -12.27037 -12.07236 -11.89951 -11.75394 -11.72133 -11.53364 -11.31715 -11.18954 -11.09590 -10.96447 -10.57820 -10.51892 -9.88764 -9.67027 -8.14423 -6.28970 0.90852 1.09330 1.39580 1.42467 1.44700 1.53624 2.29446 2.42526 3.07049 3.16168 3.63097 3.76710 3.85483 3.86615 3.97972 4.04843 4.09841 4.21941 4.24836 4.33131 4.43585 4.47310 4.56261 4.60085 4.63107 4.68404 4.73386 4.76382 4.80886 4.88070 4.90738 4.98662 5.00650 5.06865 5.11919 5.13280 5.13842 5.18767 5.22615 5.24363 5.25774 5.38709 5.40122 5.42915 5.55557 5.57396 5.60634 5.83226 5.90252 5.92077 6.24802 6.28452 6.60275 6.77847 6.86350 7.40863 8.91573 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.002947 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.401734 B = 9500.303744 C = 9728.861191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.089 4.089 5 H 0.069 0.931 6 C -0.111 4.111 7 C -0.127 4.127 8 C 0.097 3.903 9 N -0.584 5.584 10 C 0.524 3.476 11 O -0.551 6.551 12 C 0.500 3.500 13 O -0.564 6.564 14 N -0.583 5.583 15 C 0.108 3.892 16 C -0.128 4.128 17 C -0.102 4.102 18 C 0.035 3.965 19 H -0.018 1.018 20 C -0.532 4.532 21 H 0.067 0.933 22 C 0.010 3.990 23 N -0.918 5.918 24 Si 0.958 3.042 25 H -0.273 1.273 26 H -0.291 1.291 27 H -0.261 1.261 28 C 0.127 3.873 29 C 0.108 3.892 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.039 0.961 47 H 0.070 0.930 48 H 0.054 0.946 49 H 0.260 0.740 50 H 0.061 0.939 51 H 0.070 0.930 52 H 0.080 0.920 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.760 2.904 -17.393 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.212 4.212 4 C -0.108 4.108 5 H 0.088 0.912 6 C -0.148 4.148 7 C -0.165 4.165 8 C -0.025 4.025 9 N -0.317 5.317 10 C 0.306 3.694 11 O -0.429 6.429 12 C 0.283 3.717 13 O -0.443 6.443 14 N -0.316 5.316 15 C -0.014 4.014 16 C -0.166 4.166 17 C -0.139 4.139 18 C 0.016 3.984 19 H 0.000 1.000 20 C -0.571 4.571 21 H 0.085 0.915 22 C -0.190 4.190 23 N -0.557 5.557 24 Si 0.784 3.216 25 H -0.199 1.199 26 H -0.217 1.217 27 H -0.185 1.185 28 C 0.006 3.994 29 C -0.012 4.012 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.121 0.879 45 H 0.127 0.873 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.079 0.921 51 H 0.089 0.911 52 H 0.098 0.902 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.909 2.980 -17.579 26.725 hybrid contribution 1.455 -0.495 0.955 1.809 sum -18.453 2.485 -16.624 24.961 Atomic orbital electron populations 1.21861 0.93897 1.02542 1.01940 1.21048 0.96687 0.95512 0.96901 1.21936 1.00747 0.96441 1.02050 1.21552 0.92163 0.97588 0.99506 0.91214 1.21659 1.02111 0.93608 0.97459 1.21918 0.91807 1.03099 0.99651 1.22070 0.96984 0.80667 1.02734 1.48216 1.41626 1.15764 1.26098 1.20158 0.79527 0.85687 0.83997 1.90741 1.54854 1.20396 1.76871 1.20605 0.82967 0.82918 0.85220 1.90777 1.32267 1.36310 1.84959 1.48571 1.31096 1.43864 1.08035 1.21913 0.87959 0.91575 0.99938 1.21849 1.02392 0.97528 0.94867 1.21505 0.97729 0.98296 0.96405 1.18939 0.93250 0.93019 0.93229 1.00015 1.21472 1.10809 1.27527 0.97254 0.91458 1.25919 0.95464 0.98334 0.99241 1.70134 1.13685 1.38763 1.33083 0.85533 0.76974 0.79247 0.79880 1.19851 1.21674 1.18478 1.21864 0.99391 0.95715 0.82416 1.22053 0.95722 0.96086 0.87383 0.92941 0.92204 0.91366 0.90172 0.91756 0.93096 0.93389 0.90604 0.89124 0.88257 0.91464 0.89156 0.92090 0.90266 0.87870 0.87283 0.94164 0.91156 0.92687 0.93090 0.92082 0.91120 0.90201 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.85 71.98 0.64 -0.58 16 2 C -0.08 -0.88 2.51 -10.79 -0.03 -0.90 16 3 C -0.15 -1.97 8.85 71.98 0.64 -1.33 16 4 C -0.09 -1.20 1.93 -10.71 -0.02 -1.23 16 5 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 6 C -0.11 -1.15 4.85 30.63 0.15 -1.00 16 7 C -0.13 -1.75 6.09 30.67 0.19 -1.56 16 8 C 0.10 2.10 6.35 86.36 0.55 2.65 16 9 N -0.58 -15.42 2.97 -820.47 -2.44 -17.86 16 10 C 0.52 19.44 5.47 87.27 0.48 19.91 16 11 O -0.55 -23.36 16.53 -3.26 -0.05 -23.42 16 12 C 0.50 22.00 5.49 87.27 0.48 22.48 16 13 O -0.56 -29.75 16.50 -3.25 -0.05 -29.81 16 14 N -0.58 -24.06 2.98 -821.32 -2.45 -26.51 16 15 C 0.11 3.30 6.33 86.22 0.55 3.84 16 16 C -0.13 -4.07 6.06 30.53 0.19 -3.88 16 17 C -0.10 -3.89 5.11 30.62 0.16 -3.74 16 18 C 0.03 1.76 2.20 -11.47 -0.03 1.74 16 19 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 20 C -0.53 -28.93 8.56 25.60 0.22 -28.71 16 21 H 0.07 3.48 7.76 -2.91 -0.02 3.46 16 22 C 0.01 0.56 5.23 84.65 0.44 1.00 16 23 N -0.92 -56.22 11.70 21.45 0.25 -55.96 16 24 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 27 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 28 C 0.13 6.24 5.40 86.36 0.47 6.71 16 29 C 0.11 2.17 5.17 86.36 0.45 2.62 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.07 0.45 6.42 -2.39 -0.02 0.44 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.05 0.72 6.56 -2.39 -0.02 0.70 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.68 6.38 -2.38 -0.02 0.66 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.06 1.68 6.29 -2.39 -0.02 1.66 16 43 H 0.08 2.26 6.31 -2.39 -0.02 2.24 16 44 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 45 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 46 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 50 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 51 H 0.07 4.17 5.42 -2.39 -0.01 4.16 16 52 H 0.08 1.91 5.64 -2.39 -0.01 1.90 16 53 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -75.80 401.62 3.66 -72.14 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.88 Total: 17.51 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 5.50 Total: 18.00 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -4.64 Total: -100.33 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.11 Total: -53.22 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -75.80 3.66 -72.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329662960.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.336 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds