Wall clock time and date at job start Tue Mar 31 2020 21:07:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52996 * 109.47131 * 2 1
4 4 H 1.08996 * 109.46679 * 55.00570 * 3 2 1
5 5 C 1.52996 * 109.47471 * 295.00374 * 3 2 1
6 6 C 1.53003 * 109.47284 * 180.02562 * 5 3 2
7 7 C 1.52999 * 109.47237 * 59.99794 * 6 5 3
8 8 C 1.52996 * 109.47152 * 300.00287 * 7 6 5
9 9 C 1.52999 * 109.46972 * 175.00216 * 3 2 1
10 10 H 1.09004 * 109.47409 * 300.00501 * 9 3 2
11 11 N 1.46508 * 109.47128 * 60.00307 * 9 3 2
12 12 C 1.34777 * 119.99678 * 204.99910 * 11 9 3
13 13 O 1.21341 * 120.00460 * 0.02562 * 12 11 9
14 14 C 1.49454 * 119.99629 * 179.97438 * 12 11 9
15 15 O 1.21349 * 120.00171 * 6.75090 * 14 12 11
16 16 N 1.34777 * 120.00166 * 186.74252 * 14 12 11
17 17 C 1.46926 * 120.62764 * 8.43471 * 16 14 12
18 18 C 1.53624 * 108.54720 * 126.36479 * 17 16 14
19 19 C 1.53038 * 109.23967 * 54.85053 * 18 17 16
20 20 C 1.53039 * 109.54125 * 298.51843 * 19 18 17
21 21 H 1.09001 * 109.49273 * 301.40811 * 20 19 18
22 22 C 1.50698 * 109.52581 * 181.33436 * 20 19 18
23 23 H 1.08009 * 119.99759 * 0.14139 * 22 20 19
24 24 C 1.37879 * 120.00326 * 180.14176 * 22 20 19
25 25 N 1.31513 * 119.99582 * 359.97438 * 24 22 20
26 26 Si 1.86800 * 120.00104 * 179.97438 * 24 22 20
27 27 H 1.48500 * 109.47108 * 0.02562 * 26 24 22
28 28 H 1.48504 * 109.46908 * 119.99983 * 26 24 22
29 29 H 1.48502 * 109.47046 * 239.99946 * 26 24 22
30 30 C 1.46925 * 120.63091 * 188.70588 * 16 14 12
31 31 H 1.09007 * 109.47055 * 299.99651 * 1 2 3
32 32 H 1.08996 * 109.47608 * 59.99420 * 1 2 3
33 33 H 1.09002 * 109.47615 * 180.02562 * 1 2 3
34 34 H 1.09008 * 109.46548 * 240.00211 * 2 1 3
35 35 H 1.08994 * 109.47171 * 120.00846 * 2 1 3
36 36 H 1.09000 * 109.47345 * 59.99831 * 5 3 2
37 37 H 1.09005 * 109.47166 * 299.99822 * 5 3 2
38 38 H 1.09004 * 109.46994 * 179.97438 * 6 5 3
39 39 H 1.08996 * 109.46602 * 300.00033 * 6 5 3
40 40 H 1.09002 * 109.46817 * 59.99737 * 7 6 5
41 41 H 1.08996 * 109.47075 * 179.97438 * 7 6 5
42 42 H 1.09005 * 109.47166 * 300.00130 * 8 7 6
43 43 H 1.09000 * 109.47345 * 180.02562 * 8 7 6
44 44 H 0.96990 * 119.99698 * 24.99794 * 11 9 3
45 45 H 1.09006 * 109.58310 * 246.20276 * 17 16 14
46 46 H 1.09010 * 109.58720 * 6.62063 * 17 16 14
47 47 H 1.08999 * 109.63311 * 294.86338 * 18 17 16
48 48 H 1.08990 * 109.45948 * 174.73953 * 18 17 16
49 49 H 1.09000 * 109.46344 * 178.49325 * 19 18 17
50 50 H 1.09008 * 109.44590 * 58.53051 * 19 18 17
51 51 H 0.96998 * 119.99452 * 180.02562 * 25 24 22
52 52 H 1.08992 * 109.58755 * 353.37642 * 30 16 14
53 53 H 1.09000 * 109.58209 * 113.80510 * 30 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9814 0.8419
5 6 1.6352 2.1266 -1.3072
6 6 2.1458 3.5689 -1.3075
7 6 3.6706 3.5702 -1.1821
8 6 4.0754 2.8860 0.1252
9 6 3.5648 1.4442 0.1257
10 1 3.8532 0.9568 1.0570
11 7 4.1489 0.7198 -1.0059
12 6 5.3659 0.1530 -0.8872
13 8 5.9777 0.2423 0.1569
14 6 5.9615 -0.5865 -2.0413
15 8 5.4079 -0.5736 -3.1211
16 7 7.1137 -1.2676 -1.8830
17 6 7.6994 -1.4477 -0.5476
18 6 7.9419 -2.9473 -0.3184
19 6 8.7986 -3.4997 -1.4598
20 6 8.0551 -3.3295 -2.7866
21 1 7.0995 -3.8515 -2.7377
22 6 8.8849 -3.9032 -3.9062
23 1 9.8460 -4.3476 -3.6930
24 6 8.4172 -3.8609 -5.2025
25 7 7.2467 -3.3203 -5.4619
26 14 9.4461 -4.5714 -6.5903
27 1 10.7120 -5.1174 -6.0385
28 1 8.6892 -5.6591 -7.2608
29 1 9.7545 -3.5033 -7.5748
30 6 7.8110 -1.8391 -3.0431
31 1 -0.3633 0.5138 0.8901
32 1 -0.3634 0.5139 -0.8899
33 1 -0.3634 -1.0277 0.0005
34 1 1.8932 -0.5139 -0.8901
35 1 1.8933 -0.5139 0.8898
36 1 0.5489 2.1253 -1.3968
37 1 2.0698 1.5876 -2.1492
38 1 1.8577 4.0561 -2.2390
39 1 1.7116 4.1081 -0.4656
40 1 4.1048 3.0308 -2.0240
41 1 4.0344 4.5976 -1.1827
42 1 3.6411 3.4253 0.9671
43 1 5.1617 2.8873 0.2147
44 1 3.6598 0.6481 -1.8403
45 1 8.6448 -0.9084 -0.4875
46 1 7.0111 -1.0678 0.2076
47 1 6.9873 -3.4729 -0.2928
48 1 8.4616 -3.0905 0.6288
49 1 8.9953 -4.5578 -1.2870
50 1 9.7429 -2.9567 -1.5005
51 1 6.9175 -3.2909 -6.3739
52 1 7.1965 -1.7177 -3.9350
53 1 8.7653 -1.3312 -3.1824
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001330871945.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:07:56
Heat of formation + Delta-G solvation = -106.788041 kcal
Electronic energy + Delta-G solvation = -31094.126655 eV
Core-core repulsion = 27156.989771 eV
Total energy + Delta-G solvation = -3937.136884 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 336.220 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-42.10841 -40.63827 -39.11481 -38.49551 -35.43983 -34.87995 -34.68477 -33.44149
-31.58078 -31.04813 -29.80811 -27.60334 -26.80306 -24.82373 -24.60599 -23.53049
-23.16416 -21.91720 -21.47178 -20.52547 -20.08283 -18.88869 -18.27505 -17.78025
-17.12035 -16.73646 -16.46857 -16.39578 -16.02733 -15.76063 -15.48251 -15.21611
-14.93392 -14.73974 -14.60416 -14.49029 -14.33462 -14.17211 -13.92798 -13.57807
-13.48596 -13.21325 -13.12155 -12.93459 -12.87258 -12.47010 -12.42271 -12.33713
-12.30245 -12.15545 -11.98725 -11.76681 -11.65870 -11.64065 -11.39960 -11.19637
-11.13102 -10.98851 -10.86604 -10.55811 -10.28512 -9.98699 -9.54490 -8.12054
-6.29043 0.38809 1.37079 1.41676 1.43464 1.53868 2.16220 2.40987
2.60438 3.15948 3.33904 3.59981 3.73018 3.80746 4.11632 4.13163
4.16180 4.18601 4.32099 4.33983 4.44549 4.49900 4.53223 4.57974
4.61978 4.68703 4.71934 4.75033 4.80461 4.83157 4.90356 4.99698
5.05282 5.07565 5.14747 5.18097 5.19494 5.22189 5.25446 5.27196
5.30216 5.33666 5.37991 5.42594 5.49694 5.53453 5.55937 5.59581
5.83833 5.93610 6.04498 6.29826 6.44151 6.75703 6.83826 7.00675
7.40922 8.91802
Molecular weight = 336.22amu
Principal moments of inertia in cm(-1)
A = 0.015629 B = 0.002952 C = 0.002812
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1791.073840 B = 9483.076346 C = 9956.585199
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.124 4.124
3 C -0.083 4.083
4 H 0.111 0.889
5 C -0.121 4.121
6 C -0.113 4.113
7 C -0.122 4.122
8 C -0.126 4.126
9 C 0.144 3.856
10 H 0.088 0.912
11 N -0.678 5.678
12 C 0.520 3.480
13 O -0.523 6.523
14 C 0.482 3.518
15 O -0.559 6.559
16 N -0.577 5.577
17 C 0.071 3.929
18 C -0.125 4.125
19 C -0.106 4.106
20 C 0.040 3.960
21 H -0.011 1.011
22 C -0.535 4.535
23 H 0.062 0.938
24 C 0.011 3.989
25 N -0.914 5.914
26 Si 0.959 3.041
27 H -0.262 1.262
28 H -0.282 1.282
29 H -0.281 1.281
30 C 0.121 3.879
31 H 0.067 0.933
32 H 0.061 0.939
33 H 0.049 0.951
34 H 0.044 0.956
35 H 0.060 0.940
36 H 0.085 0.915
37 H 0.045 0.955
38 H 0.065 0.935
39 H 0.081 0.919
40 H 0.039 0.961
41 H 0.069 0.931
42 H 0.098 0.902
43 H 0.048 0.952
44 H 0.411 0.589
45 H 0.072 0.928
46 H 0.140 0.860
47 H 0.048 0.952
48 H 0.100 0.900
49 H 0.054 0.946
50 H 0.057 0.943
51 H 0.261 0.739
52 H 0.085 0.915
53 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.248 13.618 14.832 23.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.162 4.162
3 C -0.101 4.101
4 H 0.129 0.871
5 C -0.158 4.158
6 C -0.151 4.151
7 C -0.160 4.160
8 C -0.164 4.164
9 C 0.041 3.959
10 H 0.106 0.894
11 N -0.330 5.330
12 C 0.301 3.699
13 O -0.402 6.402
14 C 0.265 3.735
15 O -0.438 6.438
16 N -0.308 5.308
17 C -0.050 4.050
18 C -0.163 4.163
19 C -0.144 4.144
20 C 0.021 3.979
21 H 0.007 0.993
22 C -0.574 4.574
23 H 0.081 0.919
24 C -0.189 4.189
25 N -0.552 5.552
26 Si 0.785 3.215
27 H -0.186 1.186
28 H -0.208 1.208
29 H -0.207 1.207
30 C -0.001 4.001
31 H 0.086 0.914
32 H 0.080 0.920
33 H 0.068 0.932
34 H 0.063 0.937
35 H 0.079 0.921
36 H 0.103 0.897
37 H 0.064 0.936
38 H 0.083 0.917
39 H 0.100 0.900
40 H 0.058 0.942
41 H 0.088 0.912
42 H 0.117 0.883
43 H 0.067 0.933
44 H 0.249 0.751
45 H 0.090 0.910
46 H 0.156 0.844
47 H 0.067 0.933
48 H 0.118 0.882
49 H 0.073 0.927
50 H 0.076 0.924
51 H 0.070 0.930
52 H 0.103 0.897
53 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -12.227 13.729 14.875 23.648
hybrid contribution 0.534 -0.774 -1.859 2.083
sum -11.693 12.955 13.016 21.771
Atomic orbital electron populations
1.21782 0.94406 1.01778 1.02631 1.21585 0.97112 0.96003 1.01492
1.21456 0.91701 0.96697 1.00272 0.87076 1.21694 1.01965 0.95805
0.96336 1.21517 0.94359 0.96403 1.02781 1.21530 0.97064 1.00493
0.96922 1.21890 1.00593 0.94536 0.99380 1.21366 0.93771 0.92239
0.88505 0.89418 1.45990 1.16581 1.52257 1.18221 1.19879 0.82962
0.79972 0.87116 1.90429 1.60456 1.59799 1.29501 1.20652 0.82377
0.81372 0.89091 1.90739 1.60981 1.63121 1.28990 1.48458 1.21853
1.49905 1.10587 1.23018 1.01200 0.97110 0.83629 1.21995 0.99990
0.94946 0.99376 1.21551 0.98330 1.00140 0.94386 1.18889 0.94553
0.90995 0.93502 0.99312 1.21516 1.04725 1.38695 0.92420 0.91947
1.25890 0.95992 0.95450 1.01540 1.70076 1.19622 1.45066 1.20482
0.85484 0.79067 0.78013 0.78972 1.18605 1.20799 1.20707 1.21936
0.94811 0.95397 0.87925 0.91410 0.92020 0.93216 0.93740 0.92124
0.89688 0.93585 0.91669 0.90034 0.94168 0.91220 0.88331 0.93266
0.75113 0.90987 0.84366 0.93335 0.88156 0.92724 0.92433 0.93002
0.89700 0.93805
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.92 9.67 71.98 0.70 -1.23 16
2 C -0.12 -2.01 5.17 30.59 0.16 -1.86 16
3 C -0.08 -1.14 1.98 -10.80 -0.02 -1.17 16
4 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16
5 C -0.12 -1.67 4.79 30.59 0.15 -1.52 16
6 C -0.11 -1.45 5.92 30.59 0.18 -1.26 16
7 C -0.12 -2.06 5.77 30.59 0.18 -1.88 16
8 C -0.13 -2.16 5.60 30.58 0.17 -1.98 16
9 C 0.14 2.72 2.23 44.97 0.10 2.82 16
10 H 0.09 1.78 7.58 -2.39 -0.02 1.76 16
11 N -0.68 -17.54 3.60 -443.92 -1.60 -19.14 16
12 C 0.52 17.16 7.71 87.27 0.67 17.84 16
13 O -0.52 -17.22 12.84 -3.22 -0.04 -17.26 16
14 C 0.48 20.36 7.73 87.27 0.67 21.03 16
15 O -0.56 -27.28 15.93 -3.24 -0.05 -27.33 16
16 N -0.58 -24.88 2.97 -819.64 -2.43 -27.31 16
17 C 0.07 2.49 6.01 86.51 0.52 3.01 16
18 C -0.13 -4.24 6.10 30.82 0.19 -4.05 16
19 C -0.11 -4.35 5.11 30.62 0.16 -4.19 16
20 C 0.04 2.06 2.25 -11.47 -0.03 2.03 16
21 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16
22 C -0.54 -29.74 8.57 25.60 0.22 -29.52 16
23 H 0.06 3.35 7.75 -2.91 -0.02 3.33 16
24 C 0.01 0.61 5.30 84.66 0.45 1.05 16
25 N -0.91 -55.13 11.39 21.45 0.24 -54.89 16
26 Si 0.96 44.26 29.54 68.60 2.03 46.28 16
27 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16
28 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16
29 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
30 C 0.12 6.17 5.41 86.36 0.47 6.64 16
31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16
32 H 0.06 0.74 6.56 -2.39 -0.02 0.73 16
33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
34 H 0.04 0.92 7.61 -2.38 -0.02 0.90 16
35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
36 H 0.08 0.95 6.57 -2.39 -0.02 0.94 16
37 H 0.05 0.82 6.51 -2.38 -0.02 0.80 16
38 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16
39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
40 H 0.04 0.88 7.60 -2.39 -0.02 0.86 16
41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
42 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16
43 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16
44 H 0.41 10.92 6.16 -92.72 -0.57 10.35 16
45 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16
46 H 0.14 4.60 4.30 -48.69 -0.21 4.39 16
47 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16
48 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16
49 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16
50 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16
51 H 0.26 15.07 8.31 -92.71 -0.77 14.29 16
52 H 0.08 5.04 5.12 -2.39 -0.01 5.03 16
53 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16
Total: -1.00 -67.94 397.22 3.20 -64.74
By element:
Atomic # 1 Polarization: 29.02 SS G_CDS: 0.12 Total: 29.15 kcal
Atomic # 6 Polarization: 0.83 SS G_CDS: 4.93 Total: 5.76 kcal
Atomic # 7 Polarization: -97.55 SS G_CDS: -3.79 Total: -101.34 kcal
Atomic # 8 Polarization: -44.50 SS G_CDS: -0.09 Total: -44.59 kcal
Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal
Total: -67.94 3.20 -64.74 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001330871945.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.044 kcal
(2) G-P(sol) polarization free energy of solvation -67.943 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.987 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.744 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds