Wall clock time and date at job start Tue Mar 31 2020 21:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46553 * 2 1 4 4 H 1.08995 * 109.47093 * 55.00653 * 3 2 1 5 5 C 1.52998 * 109.47230 * 295.00202 * 3 2 1 6 6 C 1.52999 * 109.46838 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47193 * 60.00307 * 6 5 3 8 8 C 1.53007 * 109.46846 * 299.99663 * 7 6 5 9 9 C 1.52999 * 109.46949 * 60.00187 * 8 7 6 10 10 H 1.08997 * 109.46631 * 60.00264 * 9 8 7 11 11 N 1.46500 * 109.46795 * 179.97438 * 9 8 7 12 12 C 1.34774 * 120.00031 * 275.00053 * 11 9 8 13 13 O 1.21350 * 120.00084 * 359.97438 * 12 11 9 14 14 C 1.49447 * 120.00333 * 180.02562 * 12 11 9 15 15 O 1.21355 * 120.00031 * 6.76705 * 14 12 11 16 16 N 1.34773 * 120.00473 * 186.76821 * 14 12 11 17 17 C 1.46926 * 120.62996 * 8.64784 * 16 14 12 18 18 C 1.53196 * 108.77766 * 126.36621 * 17 16 14 19 19 C 1.53039 * 109.31119 * 54.63579 * 18 17 16 20 20 C 1.53042 * 109.53691 * 298.63354 * 19 18 17 21 21 H 1.08994 * 109.50101 * 301.41408 * 20 19 18 22 22 C 1.50703 * 109.49658 * 181.34967 * 20 19 18 23 23 H 1.08003 * 119.99664 * 359.97438 * 22 20 19 24 24 C 1.37879 * 120.00089 * 180.02562 * 22 20 19 25 25 N 1.31517 * 120.00006 * 359.97438 * 24 22 20 26 26 Si 1.86802 * 120.00043 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47087 * 59.99383 * 26 24 22 28 28 H 1.48498 * 109.47180 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46827 * 299.99707 * 26 24 22 30 30 C 1.46927 * 120.63206 * 188.36343 * 16 14 12 31 31 H 1.08994 * 109.47052 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47001 * 299.99472 * 1 2 3 33 33 H 1.08999 * 109.47330 * 59.99361 * 1 2 3 34 34 H 1.09002 * 109.47001 * 240.00528 * 2 1 3 35 35 H 1.08999 * 109.47186 * 120.00103 * 2 1 3 36 36 H 1.09006 * 109.47077 * 299.99890 * 5 3 2 37 37 H 1.08993 * 109.47061 * 60.00432 * 5 3 2 38 38 H 1.08992 * 109.47313 * 299.99795 * 6 5 3 39 39 H 1.09002 * 109.46986 * 179.97438 * 6 5 3 40 40 H 1.09001 * 109.46860 * 179.97438 * 7 6 5 41 41 H 1.08992 * 109.47409 * 59.99546 * 7 6 5 42 42 H 1.09001 * 109.46880 * 299.99969 * 8 7 6 43 43 H 1.09003 * 109.46956 * 180.02562 * 8 7 6 44 44 H 0.97001 * 119.99910 * 95.00326 * 11 9 8 45 45 H 1.09000 * 109.58754 * 246.15479 * 17 16 14 46 46 H 1.09003 * 109.58359 * 6.57992 * 17 16 14 47 47 H 1.08997 * 109.49668 * 174.58482 * 18 17 16 48 48 H 1.08992 * 109.49450 * 294.65308 * 18 17 16 49 49 H 1.08998 * 109.46197 * 58.65485 * 19 18 17 50 50 H 1.08996 * 109.46043 * 178.62451 * 19 18 17 51 51 H 0.96997 * 120.00062 * 180.02562 * 25 24 22 52 52 H 1.08999 * 109.59049 * 353.42190 * 30 16 14 53 53 H 1.08999 * 109.58502 * 113.84620 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 2.1455 3.5690 -1.3075 7 6 3.6704 3.5704 -1.1822 8 6 4.0752 2.8863 0.1252 9 6 3.5648 1.4439 0.1254 10 1 3.9992 0.9048 -0.7164 11 7 3.9530 0.7888 1.3769 12 6 5.1702 0.2215 1.4913 13 8 5.9444 0.2531 0.5574 14 6 5.5660 -0.4473 2.7678 15 8 4.7520 -0.5885 3.6567 16 7 6.8270 -0.8938 2.9319 17 6 7.8706 -0.5665 1.9508 18 6 9.0578 0.0642 2.6854 19 6 9.5180 -0.8745 3.8030 20 6 8.3793 -1.0728 4.8061 21 1 8.0823 -0.1071 5.2151 22 6 8.8441 -1.9707 5.9236 23 1 9.8509 -2.3615 5.9190 24 6 7.9837 -2.2942 6.9513 25 7 6.7575 -1.8187 6.9567 26 14 8.5601 -3.4067 8.3369 27 1 9.7199 -2.7826 9.0228 28 1 7.4548 -3.5988 9.3098 29 1 8.9640 -4.7225 7.7796 30 6 7.1857 -1.7118 4.0985 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8900 36 1 2.0698 1.5877 -2.1492 37 1 0.5488 2.1253 -1.3968 38 1 1.7113 4.1082 -0.4657 39 1 1.8575 4.0562 -2.2390 40 1 4.0340 4.5979 -1.1827 41 1 4.1047 3.0311 -2.0239 42 1 3.6410 3.4256 0.9671 43 1 5.1616 2.8876 0.2147 44 1 3.3339 0.7632 2.1233 45 1 8.1951 -1.4761 1.4453 46 1 7.4764 0.1394 1.2197 47 1 9.8766 0.2236 1.9839 48 1 8.7545 1.0195 3.1138 49 1 9.7977 -1.8376 3.3762 50 1 10.3781 -0.4392 4.3117 51 1 6.1523 -2.0460 7.6798 52 1 6.3398 -1.7613 4.7841 53 1 7.4532 -2.7166 3.7718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330871947.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:00 Heat of formation + Delta-G solvation = -110.154069 kcal Electronic energy + Delta-G solvation = -30731.191217 eV Core-core repulsion = 26793.908371 eV Total energy + Delta-G solvation = -3937.282846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.05172 -40.52337 -39.16025 -38.51996 -35.64363 -35.01327 -34.82708 -33.45880 -31.61244 -30.77015 -29.78278 -27.57997 -26.79771 -24.85314 -24.69834 -23.53398 -22.69896 -21.74368 -21.52077 -21.01718 -20.23519 -18.81610 -18.20660 -17.98911 -17.10167 -16.95330 -16.51049 -16.33910 -15.75431 -15.58384 -15.43504 -15.19263 -14.89904 -14.84318 -14.66741 -14.54490 -14.34078 -14.16244 -13.92732 -13.82806 -13.48885 -13.43886 -13.01417 -12.84858 -12.62917 -12.53163 -12.35671 -12.29287 -12.25793 -12.14935 -12.00357 -11.76993 -11.68229 -11.63499 -11.39522 -11.25322 -11.15082 -11.03635 -10.97763 -10.54468 -10.22410 -10.06226 -9.55379 -8.11552 -6.28769 0.37079 1.35571 1.42045 1.44402 1.51463 2.14814 2.41160 2.57591 3.16137 3.31951 3.55875 3.72502 3.88958 4.11061 4.13950 4.15972 4.21680 4.31852 4.33303 4.40355 4.46954 4.50795 4.56143 4.57818 4.68736 4.71570 4.78929 4.81174 4.83510 4.92574 4.99784 5.04872 5.09851 5.15521 5.18798 5.19262 5.22116 5.25860 5.27201 5.31049 5.32985 5.35900 5.40995 5.49167 5.52128 5.56536 5.59982 5.84068 5.93837 6.03343 6.29826 6.43447 6.74395 6.83470 6.99435 7.41071 8.91901 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.002754 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.764779 B =10166.308589 C =11168.510006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.087 4.087 4 H 0.082 0.918 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.112 4.112 8 C -0.129 4.129 9 C 0.148 3.852 10 H 0.082 0.918 11 N -0.683 5.683 12 C 0.521 3.479 13 O -0.523 6.523 14 C 0.484 3.516 15 O -0.558 6.558 16 N -0.576 5.576 17 C 0.072 3.928 18 C -0.126 4.126 19 C -0.107 4.107 20 C 0.040 3.960 21 H -0.012 1.012 22 C -0.537 4.537 23 H 0.063 0.937 24 C 0.011 3.989 25 N -0.914 5.914 26 Si 0.959 3.041 27 H -0.269 1.269 28 H -0.287 1.287 29 H -0.268 1.268 30 C 0.121 3.879 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.414 0.586 45 H 0.072 0.928 46 H 0.138 0.862 47 H 0.100 0.900 48 H 0.048 0.952 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.261 0.739 52 H 0.085 0.915 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 9.850 -19.812 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.106 4.106 4 H 0.101 0.899 5 C -0.145 4.145 6 C -0.156 4.156 7 C -0.150 4.150 8 C -0.168 4.168 9 C 0.045 3.955 10 H 0.100 0.900 11 N -0.334 5.334 12 C 0.302 3.698 13 O -0.401 6.401 14 C 0.266 3.734 15 O -0.437 6.437 16 N -0.308 5.308 17 C -0.049 4.049 18 C -0.163 4.163 19 C -0.144 4.144 20 C 0.020 3.980 21 H 0.007 0.993 22 C -0.575 4.575 23 H 0.081 0.919 24 C -0.188 4.188 25 N -0.552 5.552 26 Si 0.784 3.216 27 H -0.194 1.194 28 H -0.213 1.213 29 H -0.193 1.193 30 C -0.001 4.001 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.251 0.749 45 H 0.091 0.909 46 H 0.155 0.845 47 H 0.119 0.881 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.070 0.930 52 H 0.104 0.896 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.582 9.786 -19.916 24.584 hybrid contribution 0.120 -0.891 1.824 2.034 sum -10.463 8.894 -18.092 22.713 Atomic orbital electron populations 1.21786 0.94452 1.01852 1.02545 1.21590 0.97081 0.95867 1.01614 1.21451 0.91714 0.96862 1.00571 0.89917 1.21588 1.01911 0.95474 0.95503 1.21575 0.94652 0.96605 1.02794 1.21477 0.96846 1.00682 0.96005 1.21922 1.00493 0.94587 0.99763 1.21333 0.96098 0.93165 0.84916 0.89974 1.45948 1.14855 1.54387 1.18239 1.19893 0.83398 0.79179 0.87337 1.90443 1.49732 1.59802 1.40168 1.20605 0.83533 0.80983 0.88258 1.90744 1.51537 1.57880 1.43526 1.48454 1.08218 1.49091 1.25031 1.22901 0.87960 1.02736 0.91267 1.21926 0.98138 0.98154 0.98130 1.21551 0.97969 0.98946 0.95957 1.18813 0.91703 0.94566 0.92879 0.99338 1.21455 0.98796 1.30528 1.06766 0.91912 1.25890 0.94967 0.97422 1.00564 1.70057 1.06487 1.45340 1.33319 0.85594 0.77765 0.79448 0.78770 1.19436 1.21298 1.19252 1.21859 1.01625 0.91551 0.85039 0.93011 0.92580 0.91088 0.92050 0.93471 0.91561 0.89738 0.91560 0.90399 0.90934 0.91762 0.91362 0.93138 0.74934 0.90943 0.84526 0.88123 0.93356 0.92396 0.92700 0.92968 0.89634 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 71.98 0.70 -1.28 16 2 C -0.12 -2.03 5.32 30.60 0.16 -1.87 16 3 C -0.09 -1.28 1.77 -10.79 -0.02 -1.30 16 4 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 5 C -0.11 -1.16 4.96 30.59 0.15 -1.00 16 6 C -0.12 -1.22 5.92 30.59 0.18 -1.04 16 7 C -0.11 -1.49 5.92 30.60 0.18 -1.31 16 8 C -0.13 -2.37 5.49 30.60 0.17 -2.20 16 9 C 0.15 2.92 1.90 44.99 0.09 3.01 16 10 H 0.08 1.82 7.57 -2.39 -0.02 1.80 16 11 N -0.68 -17.67 4.30 -443.87 -1.91 -19.57 16 12 C 0.52 17.20 7.70 87.27 0.67 17.88 16 13 O -0.52 -17.37 12.85 -3.25 -0.04 -17.42 16 14 C 0.48 20.30 7.73 87.27 0.67 20.97 16 15 O -0.56 -27.00 15.93 -3.26 -0.05 -27.05 16 16 N -0.58 -24.81 2.98 -821.30 -2.45 -27.25 16 17 C 0.07 2.52 5.98 86.36 0.52 3.04 16 18 C -0.13 -4.25 6.08 30.67 0.19 -4.07 16 19 C -0.11 -4.35 5.11 30.62 0.16 -4.19 16 20 C 0.04 2.04 2.24 -11.60 -0.03 2.02 16 21 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 22 C -0.54 -29.78 8.57 25.60 0.22 -29.56 16 23 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 24 C 0.01 0.63 5.30 84.65 0.45 1.08 16 25 N -0.91 -55.02 11.39 21.45 0.24 -54.77 16 26 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 28 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 29 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 30 C 0.12 6.15 5.39 86.22 0.46 6.61 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.73 6.56 -2.39 -0.02 0.71 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.97 7.30 -2.39 -0.02 0.95 16 36 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.08 0.72 6.56 -2.39 -0.02 0.70 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 44 H 0.41 10.55 7.89 -92.71 -0.73 9.81 16 45 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.14 4.56 4.32 -47.21 -0.20 4.35 16 47 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 48 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 52 H 0.09 5.07 5.11 -2.39 -0.01 5.05 16 53 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -67.45 401.29 2.71 -64.74 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.04 Total: 28.37 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 4.92 Total: 6.79 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -4.11 Total: -101.60 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -0.09 Total: -44.47 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.45 2.71 -64.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330871947.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.417 kcal (2) G-P(sol) polarization free energy of solvation -67.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds