Wall clock time and date at job start Tue Mar 31 2020 21:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 H 1.09000 * 109.46945 * 54.99968 * 3 2 1 5 5 C 1.52996 * 109.46988 * 294.99756 * 3 2 1 6 6 C 1.52999 * 109.47440 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46894 * 60.00293 * 6 5 3 8 8 C 1.53005 * 109.46838 * 300.00240 * 7 6 5 9 9 C 1.52995 * 109.47192 * 175.00099 * 3 2 1 10 10 H 1.09006 * 109.47233 * 299.99640 * 9 3 2 11 11 N 1.46498 * 109.47375 * 59.99932 * 9 3 2 12 12 C 1.34779 * 119.99978 * 205.00006 * 11 9 3 13 13 O 1.21352 * 119.99942 * 0.02562 * 12 11 9 14 14 C 1.49451 * 120.00175 * 179.97438 * 12 11 9 15 15 O 1.21349 * 119.99649 * 6.40227 * 14 12 11 16 16 N 1.34771 * 120.00083 * 186.40203 * 14 12 11 17 17 C 1.46919 * 120.63418 * 7.08722 * 16 14 12 18 18 C 1.53195 * 108.77693 * 233.58631 * 17 16 14 19 19 C 1.53038 * 109.31254 * 305.36375 * 18 17 16 20 20 C 1.53039 * 109.53663 * 61.36503 * 19 18 17 21 21 H 1.09003 * 109.50115 * 58.61529 * 20 19 18 22 22 C 1.50699 * 109.49707 * 178.68194 * 20 19 18 23 23 H 1.07999 * 120.00180 * 0.02562 * 22 20 19 24 24 C 1.37885 * 120.00053 * 179.97438 * 22 20 19 25 25 N 1.31506 * 119.99892 * 0.02562 * 24 22 20 26 26 Si 1.86796 * 119.99927 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47277 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47276 * 119.99964 * 26 24 22 29 29 H 1.48496 * 109.47090 * 240.00199 * 26 24 22 30 30 C 1.46925 * 120.62820 * 186.80795 * 16 14 12 31 31 H 1.08998 * 109.47313 * 60.00233 * 1 2 3 32 32 H 1.09001 * 109.46959 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47181 * 300.00012 * 1 2 3 34 34 H 1.08996 * 109.47283 * 239.99454 * 2 1 3 35 35 H 1.09010 * 109.46999 * 119.99537 * 2 1 3 36 36 H 1.09013 * 109.47176 * 60.00360 * 5 3 2 37 37 H 1.09000 * 109.47559 * 300.00448 * 5 3 2 38 38 H 1.09000 * 109.47347 * 300.00868 * 6 5 3 39 39 H 1.08995 * 109.47437 * 179.97438 * 6 5 3 40 40 H 1.09000 * 109.47317 * 59.99794 * 7 6 5 41 41 H 1.08994 * 109.47516 * 180.02562 * 7 6 5 42 42 H 1.08997 * 109.47040 * 180.02562 * 8 7 6 43 43 H 1.09000 * 109.46803 * 299.99869 * 8 7 6 44 44 H 0.96996 * 119.99880 * 24.99525 * 11 9 3 45 45 H 1.09007 * 109.58822 * 353.37199 * 17 16 14 46 46 H 1.08996 * 109.59192 * 113.79937 * 17 16 14 47 47 H 1.09005 * 109.49609 * 65.31379 * 18 17 16 48 48 H 1.08997 * 109.49928 * 185.37568 * 18 17 16 49 49 H 1.09003 * 109.45982 * 181.38410 * 19 18 17 50 50 H 1.08996 * 109.45781 * 301.35733 * 19 18 17 51 51 H 0.97003 * 120.00106 * 179.97438 * 25 24 22 52 52 H 1.09004 * 109.58854 * 246.20176 * 30 16 14 53 53 H 1.09004 * 109.58528 * 6.62557 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 2.1446 3.5692 -1.3072 7 6 3.6695 3.5716 -1.1812 8 6 4.0742 2.8875 0.1262 9 6 3.5647 1.4444 0.1257 10 1 3.8532 0.9571 1.0571 11 7 4.1489 0.7199 -1.0057 12 6 5.3660 0.1531 -0.8869 13 8 5.9777 0.2426 0.1573 14 6 5.9617 -0.5864 -2.0409 15 8 5.4048 -0.5788 -3.1190 16 7 7.1175 -1.2617 -1.8842 17 6 7.7231 -1.4106 -0.5539 18 6 9.1738 -0.9220 -0.6151 19 6 9.9124 -1.6676 -1.7289 20 6 9.2453 -1.3699 -3.0737 21 1 9.2602 -0.2956 -3.2573 22 6 9.9928 -2.0786 -4.1737 23 1 10.8572 -2.6816 -3.9377 24 6 9.5727 -1.9580 -5.4815 25 7 8.5199 -1.2241 -5.7688 26 14 10.4988 -2.8370 -6.8449 27 1 11.6374 -3.5922 -6.2628 28 1 9.5833 -3.7788 -7.5378 29 1 11.0118 -1.8393 -7.8178 30 6 7.7926 -1.8684 -3.0396 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.5488 2.1252 -1.3969 37 1 2.0698 1.5874 -2.1492 38 1 1.7097 4.1080 -0.4654 39 1 1.8567 4.0563 -2.2387 40 1 4.1045 3.0327 -2.0229 41 1 4.0324 4.5993 -1.1806 42 1 5.1605 2.8896 0.2162 43 1 3.6392 3.4264 0.9679 44 1 3.6598 0.6481 -1.8402 45 1 7.1669 -0.8144 0.1696 46 1 7.7030 -2.4596 -0.2585 47 1 9.1888 0.1482 -0.8216 48 1 9.6633 -1.1152 0.3394 49 1 10.9515 -1.3395 -1.7584 50 1 9.8754 -2.7395 -1.5348 51 1 8.2245 -1.1390 -6.6888 52 1 7.7780 -2.9540 -2.9428 53 1 7.2823 -1.5743 -3.9568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330871953.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:08 Heat of formation + Delta-G solvation = -103.709222 kcal Electronic energy + Delta-G solvation = -31121.961835 eV Core-core repulsion = 27184.958459 eV Total energy + Delta-G solvation = -3937.003376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.13346 -40.63518 -39.12510 -38.51498 -35.44851 -34.87327 -34.69306 -33.44558 -31.57090 -31.05424 -29.80720 -27.61228 -26.81480 -24.81604 -24.60669 -23.52969 -23.16731 -21.96374 -21.47666 -20.49758 -20.08709 -18.96879 -18.25501 -17.77033 -17.09130 -16.66810 -16.56421 -16.41693 -16.02739 -15.76524 -15.48491 -15.31269 -14.90634 -14.85312 -14.58267 -14.46108 -14.40603 -14.16808 -13.83689 -13.58220 -13.46352 -13.20239 -13.13591 -12.93369 -12.89876 -12.46132 -12.41534 -12.33450 -12.31816 -12.17490 -11.98297 -11.73019 -11.65744 -11.62977 -11.39525 -11.20242 -11.15908 -10.99323 -10.86526 -10.57198 -10.23334 -9.93577 -9.55093 -8.13537 -6.29938 0.37046 1.36711 1.41306 1.42827 1.53524 2.16827 2.40414 2.60022 3.14958 3.32358 3.59975 3.73146 3.80706 4.12577 4.14659 4.18052 4.18803 4.32559 4.34572 4.44874 4.49922 4.53014 4.56980 4.61945 4.68980 4.72408 4.74470 4.80429 4.83070 4.91240 5.00694 5.04320 5.07614 5.14978 5.17922 5.19614 5.22601 5.25606 5.27466 5.30760 5.34836 5.40094 5.42920 5.51563 5.54613 5.55292 5.62259 5.82570 5.92124 6.03584 6.28757 6.44986 6.75966 6.83363 6.99779 7.39925 8.90816 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.002956 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.553570 B = 9470.105813 C = 9983.132948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.083 4.083 4 H 0.111 0.889 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.124 4.124 8 C -0.127 4.127 9 C 0.144 3.856 10 H 0.091 0.909 11 N -0.676 5.676 12 C 0.521 3.479 13 O -0.519 6.519 14 C 0.483 3.517 15 O -0.561 6.561 16 N -0.574 5.574 17 C 0.049 3.951 18 C -0.120 4.120 19 C -0.107 4.107 20 C 0.040 3.960 21 H -0.012 1.012 22 C -0.535 4.535 23 H 0.063 0.937 24 C 0.010 3.990 25 N -0.915 5.915 26 Si 0.960 3.040 27 H -0.262 1.262 28 H -0.281 1.281 29 H -0.282 1.282 30 C 0.122 3.878 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.099 0.901 44 H 0.412 0.588 45 H 0.157 0.843 46 H 0.070 0.930 47 H 0.044 0.956 48 H 0.098 0.902 49 H 0.053 0.947 50 H 0.057 0.943 51 H 0.261 0.739 52 H 0.043 0.957 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.271 7.314 15.864 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.101 4.101 4 H 0.129 0.871 5 C -0.158 4.158 6 C -0.151 4.151 7 C -0.162 4.162 8 C -0.165 4.165 9 C 0.041 3.959 10 H 0.109 0.891 11 N -0.328 5.328 12 C 0.302 3.698 13 O -0.399 6.399 14 C 0.266 3.734 15 O -0.441 6.441 16 N -0.306 5.306 17 C -0.071 4.071 18 C -0.158 4.158 19 C -0.145 4.145 20 C 0.021 3.979 21 H 0.006 0.994 22 C -0.573 4.573 23 H 0.081 0.919 24 C -0.189 4.189 25 N -0.554 5.554 26 Si 0.786 3.214 27 H -0.186 1.186 28 H -0.207 1.207 29 H -0.208 1.208 30 C 0.000 4.000 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.250 0.750 45 H 0.173 0.827 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.116 0.884 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.070 0.930 52 H 0.062 0.938 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.247 7.434 15.904 23.920 hybrid contribution 0.687 -0.601 -1.918 2.125 sum -15.559 6.833 13.985 22.009 Atomic orbital electron populations 1.21784 0.94436 1.01826 1.02580 1.21581 0.97055 0.95807 1.01637 1.21461 0.91551 0.96916 1.00197 0.87084 1.21694 1.02003 0.95651 0.96425 1.21516 0.94164 0.96621 1.02754 1.21540 0.97229 1.00421 0.96963 1.21918 1.00527 0.94782 0.99300 1.21389 0.93857 0.92066 0.88561 0.89144 1.45985 1.16460 1.52113 1.18263 1.19915 0.82883 0.79892 0.87076 1.90255 1.59530 1.60357 1.29719 1.20582 0.82594 0.81250 0.88996 1.90720 1.61525 1.63011 1.28819 1.48462 1.21110 1.49943 1.11041 1.23334 0.96059 1.03564 0.84177 1.21816 0.95110 0.99247 0.99597 1.21564 0.98725 0.99659 0.94511 1.18975 0.91130 0.94459 0.93359 0.99383 1.21517 1.13130 1.30626 0.92034 0.91923 1.25896 0.95803 0.95817 1.01383 1.70065 1.25583 1.40169 1.19561 0.85469 0.78769 0.78329 0.78877 1.18592 1.20671 1.20787 1.22022 0.95423 0.94908 0.87637 0.92080 0.93062 0.91528 0.93504 0.91968 0.89566 0.93537 0.89980 0.91771 0.94369 0.91454 0.93485 0.88227 0.75033 0.82687 0.91183 0.93670 0.88372 0.92813 0.92415 0.92980 0.93817 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.67 71.98 0.70 -1.03 16 2 C -0.12 -1.81 5.17 30.59 0.16 -1.65 16 3 C -0.08 -1.10 1.98 -10.80 -0.02 -1.12 16 4 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.12 -1.64 4.79 30.59 0.15 -1.49 16 6 C -0.11 -1.52 5.92 30.60 0.18 -1.33 16 7 C -0.12 -2.25 5.77 30.60 0.18 -2.08 16 8 C -0.13 -2.29 5.61 30.61 0.17 -2.12 16 9 C 0.14 2.70 2.23 45.01 0.10 2.80 16 10 H 0.09 1.78 7.58 -2.38 -0.02 1.76 16 11 N -0.68 -17.34 3.61 -443.79 -1.60 -18.94 16 12 C 0.52 17.24 7.75 87.27 0.68 17.91 16 13 O -0.52 -17.17 12.76 -3.25 -0.04 -17.21 16 14 C 0.48 20.40 7.74 87.27 0.68 21.07 16 15 O -0.56 -27.15 15.94 -3.24 -0.05 -27.20 16 16 N -0.57 -24.88 2.97 -819.64 -2.43 -27.32 16 17 C 0.05 1.72 6.27 86.36 0.54 2.26 16 18 C -0.12 -4.17 6.08 30.67 0.19 -3.99 16 19 C -0.11 -4.43 5.10 30.62 0.16 -4.27 16 20 C 0.04 2.08 2.26 -11.32 -0.03 2.06 16 21 H -0.01 -0.72 8.14 -2.39 -0.02 -0.73 16 22 C -0.53 -29.83 8.56 25.60 0.22 -29.62 16 23 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 24 C 0.01 0.59 5.30 84.66 0.45 1.04 16 25 N -0.92 -55.29 11.41 21.45 0.24 -55.04 16 26 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 27 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 29 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 30 C 0.12 6.24 5.41 86.51 0.47 6.71 16 31 H 0.06 0.67 6.56 -2.39 -0.02 0.65 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.05 0.87 7.61 -2.39 -0.02 0.85 16 35 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.09 0.93 6.57 -2.38 -0.02 0.91 16 37 H 0.05 0.81 6.51 -2.39 -0.02 0.79 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.04 0.90 7.61 -2.39 -0.02 0.88 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.41 10.75 6.16 -92.71 -0.57 10.18 16 45 H 0.16 5.20 3.78 -78.89 -0.30 4.90 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 49 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 51 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 52 H 0.04 2.21 8.14 -2.38 -0.02 2.19 16 53 H 0.08 4.95 5.20 -2.38 -0.01 4.93 16 Total: -1.00 -68.13 397.03 3.13 -65.00 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.03 Total: 29.16 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.95 Total: 5.16 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -3.79 Total: -101.30 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.09 Total: -44.41 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -68.13 3.13 -65.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330871953.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.710 kcal (2) G-P(sol) polarization free energy of solvation -68.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds