Wall clock time and date at job start Tue Mar 31 2020 21:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46930 * 2 1 4 4 H 1.09000 * 109.51970 * 305.07609 * 3 2 1 5 5 C 1.53042 * 109.49823 * 184.99894 * 3 2 1 6 6 C 1.53035 * 109.53927 * 178.68119 * 5 3 2 7 7 C 1.53196 * 109.31429 * 61.35920 * 6 5 3 8 8 H 1.09003 * 109.58079 * 65.15693 * 7 6 5 9 9 C 1.52998 * 109.70211 * 185.50979 * 7 6 5 10 10 N 1.46917 * 108.77624 * 305.36708 * 7 6 5 11 11 C 1.34777 * 120.63147 * 233.58116 * 10 7 6 12 12 O 1.21349 * 119.99879 * 7.12324 * 11 10 7 13 13 C 1.49451 * 120.00064 * 187.12493 * 11 10 7 14 14 O 1.21352 * 120.00018 * 7.59420 * 13 11 10 15 15 N 1.34779 * 119.99866 * 187.59966 * 13 11 10 16 16 C 1.46927 * 120.62598 * 175.64695 * 15 13 11 17 17 C 1.53188 * 108.77669 * 233.58278 * 16 15 13 18 18 C 1.53043 * 109.31125 * 305.37228 * 17 16 15 19 19 C 1.50700 * 109.45775 * 181.38298 * 18 17 16 20 20 H 1.08005 * 120.00273 * 274.86946 * 19 18 17 21 21 C 1.37878 * 120.00268 * 94.87151 * 19 18 17 22 22 N 1.31520 * 119.99841 * 354.83778 * 21 19 18 23 23 Si 1.86800 * 120.00232 * 174.83530 * 21 19 18 24 24 H 1.48495 * 109.47329 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47060 * 239.99805 * 23 21 19 26 26 H 1.48507 * 109.47141 * 120.00336 * 23 21 19 27 27 C 1.53040 * 109.53887 * 61.36614 * 18 17 16 28 28 C 1.46919 * 120.62958 * 355.62443 * 15 13 11 29 29 C 1.46931 * 118.73874 * 53.85813 * 10 7 6 30 30 H 1.08997 * 109.47759 * 300.00041 * 1 2 3 31 31 H 1.09004 * 109.47304 * 60.00945 * 1 2 3 32 32 H 1.09010 * 109.46771 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47851 * 239.99196 * 2 1 3 34 34 H 1.09004 * 109.47304 * 119.99055 * 2 1 3 35 35 H 1.09002 * 109.46104 * 58.65911 * 5 3 2 36 36 H 1.08997 * 109.45455 * 298.70018 * 5 3 2 37 37 H 1.09003 * 109.49800 * 301.41334 * 6 5 3 38 38 H 1.08996 * 109.52894 * 181.33230 * 6 5 3 39 39 H 1.09005 * 109.46770 * 184.02677 * 9 7 6 40 40 H 1.09002 * 109.47374 * 304.02404 * 9 7 6 41 41 H 1.08988 * 109.47469 * 64.02417 * 9 7 6 42 42 H 1.09008 * 109.58255 * 113.79786 * 16 15 13 43 43 H 1.08992 * 109.59101 * 353.37720 * 16 15 13 44 44 H 1.08996 * 109.50292 * 185.41932 * 17 16 15 45 45 H 1.09004 * 109.52166 * 65.33424 * 17 16 15 46 46 H 1.09002 * 109.45965 * 301.35291 * 18 17 16 47 47 H 0.96997 * 119.99796 * 4.96151 * 22 21 19 48 48 H 1.08992 * 109.50085 * 58.58430 * 27 18 17 49 49 H 1.09007 * 109.49505 * 178.68520 * 27 18 17 50 50 H 1.08997 * 109.58660 * 246.19763 * 28 15 13 51 51 H 1.08999 * 109.58790 * 6.48597 * 28 15 13 52 52 H 1.09009 * 109.58259 * 65.92604 * 29 10 7 53 53 H 1.09000 * 109.58959 * 186.34820 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9827 -0.8408 5 6 3.5652 1.4451 -0.1257 6 6 4.0735 2.8882 -0.1589 7 6 3.6950 3.5890 1.1497 8 1 4.2207 3.1192 1.9810 9 6 4.0769 5.0685 1.0717 10 7 2.2449 3.4646 1.3505 11 6 1.4855 4.5566 1.5678 12 8 1.9731 5.6636 1.4713 13 6 0.0430 4.4041 1.9277 14 8 -0.4115 3.3030 2.1594 15 7 -0.7531 5.4896 1.9950 16 6 -2.1924 5.3473 2.2538 17 6 -2.9661 6.0799 1.1531 18 6 -2.4819 7.5296 1.0733 19 6 -3.2646 8.2626 0.0145 20 1 -2.9536 8.2128 -1.0186 21 6 -4.3777 8.9971 0.3646 22 7 -4.8160 8.9763 1.6044 23 14 -5.2633 10.0217 -0.9221 24 1 -4.5764 9.8749 -2.2304 25 1 -5.2504 11.4492 -0.5129 26 1 -6.6677 9.5550 -1.0457 27 6 -0.9941 7.5533 0.7156 28 6 -0.1981 6.8375 1.8114 29 6 1.6392 2.1264 1.3159 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 3.8546 0.9369 -1.0455 36 1 4.0007 0.9262 0.7282 37 1 3.6191 3.4148 -0.9981 38 1 5.1576 2.8901 -0.2722 39 1 3.8719 5.5476 2.0292 40 1 5.1383 5.1581 0.8405 41 1 3.4926 5.5539 0.2902 42 1 -2.4342 5.7838 3.2229 43 1 -2.4619 4.2913 2.2489 44 1 -4.0310 6.0643 1.3848 45 1 -2.7945 5.5859 0.1967 46 1 -2.6313 8.0159 2.0373 47 1 -4.3160 8.5030 2.2877 48 1 -0.8406 7.0453 -0.2364 49 1 -0.6555 8.5864 0.6360 50 1 -0.2774 7.3955 2.7443 51 1 0.8489 6.7646 1.5170 52 1 2.0007 1.5398 2.1606 53 1 0.5540 2.2149 1.3676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333487083.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:29 Heat of formation + Delta-G solvation = -65.388755 kcal Electronic energy + Delta-G solvation = -31461.258224 eV Core-core repulsion = 27525.916548 eV Total energy + Delta-G solvation = -3935.341676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.49862 -40.56231 -39.19730 -38.64035 -35.93535 -35.49830 -33.87418 -32.92839 -32.10299 -31.55801 -28.53639 -27.72649 -26.48216 -25.70111 -24.50755 -24.12544 -23.37145 -22.26690 -21.34554 -21.06502 -20.22742 -18.89983 -18.20458 -17.86828 -17.25040 -17.13280 -16.43471 -16.05576 -15.80264 -15.67387 -15.61131 -15.33587 -15.07516 -15.01282 -14.69566 -14.45613 -14.43174 -14.18889 -14.08953 -13.75008 -13.50303 -13.24503 -13.17730 -13.09593 -12.94522 -12.65275 -12.57109 -12.25232 -12.22721 -12.12793 -11.99672 -11.95758 -11.81006 -11.60606 -11.54694 -11.43892 -11.23388 -10.90879 -10.59706 -10.42717 -9.87114 -9.68278 -9.51762 -8.59803 -6.29848 0.23834 1.17307 1.52543 1.60604 1.77218 2.01776 2.26933 2.56524 2.99943 3.19292 3.65378 3.79152 3.88123 3.91445 3.94808 4.11096 4.17434 4.18941 4.22235 4.29172 4.36346 4.41933 4.44004 4.54376 4.59312 4.62320 4.72116 4.73750 4.75729 4.79752 4.91039 4.95646 4.97099 5.01839 5.03216 5.07516 5.08845 5.13101 5.15536 5.18493 5.27133 5.32673 5.36722 5.43951 5.51486 5.52845 5.62299 5.73010 5.96009 6.12073 6.20655 6.24316 6.60662 6.68189 6.85520 7.48715 8.79954 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.003013 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.497486 B = 9292.005415 C = 9956.009195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.107 4.107 3 C -0.100 4.100 4 H 0.055 0.945 5 C -0.112 4.112 6 C -0.126 4.126 7 C 0.134 3.866 8 H 0.095 0.905 9 C -0.137 4.137 10 N -0.569 5.569 11 C 0.510 3.490 12 O -0.512 6.512 13 C 0.496 3.504 14 O -0.537 6.537 15 N -0.566 5.566 16 C 0.112 3.888 17 C -0.106 4.106 18 C 0.021 3.979 19 C -0.604 4.604 20 H 0.039 0.961 21 C -0.029 4.029 22 N -0.939 5.939 23 Si 1.115 2.885 24 H -0.276 1.276 25 H -0.279 1.279 26 H -0.281 1.281 27 C -0.105 4.105 28 C 0.053 3.947 29 C 0.066 3.934 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.041 0.959 46 H 0.015 0.985 47 H 0.260 0.740 48 H 0.040 0.960 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.163 0.837 52 H 0.080 0.920 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.146 -17.629 -1.440 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.145 4.145 3 C -0.119 4.119 4 H 0.073 0.927 5 C -0.149 4.149 6 C -0.164 4.164 7 C 0.032 3.968 8 H 0.112 0.888 9 C -0.194 4.194 10 N -0.300 5.300 11 C 0.293 3.707 12 O -0.391 6.391 13 C 0.280 3.720 14 O -0.417 6.417 15 N -0.297 5.297 16 C -0.010 4.010 17 C -0.145 4.145 18 C 0.002 3.998 19 C -0.642 4.642 20 H 0.057 0.943 21 C -0.227 4.227 22 N -0.577 5.577 23 Si 0.938 3.062 24 H -0.201 1.201 25 H -0.205 1.205 26 H -0.207 1.207 27 C -0.143 4.143 28 C -0.068 4.068 29 C -0.055 4.055 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.179 0.821 52 H 0.098 0.902 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 18.870 -16.657 -1.604 25.221 hybrid contribution 0.547 -0.582 0.400 0.893 sum 19.416 -17.238 -1.204 25.992 Atomic orbital electron populations 1.21848 0.96605 1.01878 1.01323 1.21454 0.95193 0.94605 1.03213 1.21639 0.97062 0.96819 0.96430 0.92669 1.21610 0.93654 0.96110 1.03542 1.21998 1.02684 0.95991 0.95754 1.21727 0.77575 0.98141 0.99318 0.88755 1.22159 1.00762 0.93444 1.03014 1.48167 1.08562 1.06668 1.66641 1.19979 0.86788 0.85217 0.78698 1.90361 1.71485 1.24774 1.52498 1.20496 0.88114 0.84338 0.79075 1.90423 1.76070 1.24415 1.50808 1.48167 1.08466 1.07221 1.65872 1.21792 0.78740 1.01748 0.98671 1.21872 0.98238 0.97773 0.96622 1.18918 0.92724 0.92109 0.96047 1.22310 1.14599 1.32596 0.94654 0.94296 1.27144 0.96746 0.97544 1.01277 1.70875 1.39485 1.44728 1.02573 0.82947 0.75203 0.75197 0.72864 1.20070 1.20509 1.20734 1.21772 0.96035 0.99319 0.97219 1.23459 1.03866 0.80348 0.99103 1.23201 1.03338 0.80630 0.98342 0.93462 0.93797 0.91744 0.90426 0.90666 0.90173 0.90308 0.92756 0.88103 0.92693 0.91090 0.92660 0.91187 0.89101 0.93537 0.94008 0.96713 0.92926 0.94071 0.92054 0.92010 0.82146 0.90184 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.68 71.98 0.70 -2.07 16 2 C -0.11 -1.46 5.40 30.59 0.17 -1.29 16 3 C -0.10 -1.65 2.35 -10.57 -0.02 -1.67 16 4 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 5 C -0.11 -1.32 5.16 30.62 0.16 -1.16 16 6 C -0.13 -1.70 5.38 30.67 0.16 -1.53 16 7 C 0.13 2.33 3.48 44.98 0.16 2.48 16 8 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 9 C -0.14 -2.71 7.60 71.98 0.55 -2.17 16 10 N -0.57 -13.13 2.97 -795.76 -2.36 -15.49 16 11 C 0.51 14.94 7.58 87.27 0.66 15.60 16 12 O -0.51 -15.74 8.43 -3.24 -0.03 -15.77 16 13 C 0.50 16.57 7.62 87.27 0.66 17.23 16 14 O -0.54 -18.32 12.58 -3.25 -0.04 -18.36 16 15 N -0.57 -20.47 2.97 -820.49 -2.44 -22.91 16 16 C 0.11 4.26 6.42 86.36 0.55 4.82 16 17 C -0.11 -4.79 5.34 30.67 0.16 -4.63 16 18 C 0.02 1.04 1.95 -11.51 -0.02 1.02 16 19 C -0.60 -33.85 8.31 25.60 0.21 -33.64 16 20 H 0.04 2.21 7.82 -2.91 -0.02 2.18 16 21 C -0.03 -1.65 5.45 84.65 0.46 -1.18 16 22 N -0.94 -56.66 13.63 21.45 0.29 -56.37 16 23 Si 1.11 50.70 29.91 68.60 2.05 52.75 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 C -0.11 -4.49 5.34 30.67 0.16 -4.32 16 28 C 0.05 1.91 6.27 86.37 0.54 2.45 16 29 C 0.07 1.37 4.94 86.50 0.43 1.80 16 30 H 0.05 0.98 6.70 -2.39 -0.02 0.96 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 1.27 6.87 -2.38 -0.02 1.26 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 1.36 6.63 -2.39 -0.02 1.35 16 42 H 0.07 2.59 8.14 -2.38 -0.02 2.58 16 43 H 0.09 3.26 7.03 -2.39 -0.02 3.25 16 44 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.01 0.79 6.40 -2.39 -0.02 0.78 16 47 H 0.26 15.72 6.55 -92.71 -0.61 15.12 16 48 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 50 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.16 5.57 3.72 -84.54 -0.31 5.26 16 52 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 53 H 0.13 3.32 2.96 -54.23 -0.16 3.16 16 Total: -1.00 -64.36 391.33 3.76 -60.61 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.59 Total: 23.80 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 5.69 Total: -8.27 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -4.51 Total: -94.76 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.07 Total: -34.13 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.75 kcal Total: -64.36 3.76 -60.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333487083.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.783 kcal (2) G-P(sol) polarization free energy of solvation -64.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds