Wall clock time and date at job start Tue Mar 31 2020 21:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47303 * 2 1 4 4 H 1.08999 * 109.47234 * 54.99931 * 3 2 1 5 5 C 1.53009 * 109.47069 * 295.00252 * 3 2 1 6 6 C 1.52992 * 109.47181 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47300 * 60.00144 * 6 5 3 8 8 C 1.53009 * 109.46718 * 299.99681 * 7 6 5 9 9 H 1.08994 * 109.46704 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.46993 * 300.00167 * 8 7 6 11 11 C 1.34783 * 119.99867 * 274.99865 * 10 8 7 12 12 O 1.21347 * 119.99920 * 0.02562 * 11 10 8 13 13 C 1.49451 * 119.99899 * 180.02562 * 11 10 8 14 14 O 1.21351 * 119.99881 * 353.07074 * 13 11 10 15 15 N 1.34773 * 119.99787 * 173.06997 * 13 11 10 16 16 C 1.46927 * 120.63460 * 1.67460 * 15 13 11 17 17 C 1.52759 * 109.00826 * 233.58282 * 16 15 13 18 18 C 1.53035 * 109.38471 * 305.58782 * 17 16 15 19 19 C 1.53039 * 109.54019 * 61.23699 * 18 17 16 20 20 H 1.09002 * 109.49694 * 58.58876 * 19 18 17 21 21 C 1.50699 * 109.52365 * 178.66758 * 19 18 17 22 22 H 1.07997 * 120.00355 * 359.85450 * 21 19 18 23 23 C 1.37880 * 119.99919 * 179.85783 * 21 19 18 24 24 N 1.31512 * 120.00150 * 359.97438 * 23 21 19 25 25 Si 1.86804 * 119.99955 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47085 * 59.99988 * 25 23 21 27 27 H 1.48504 * 109.46687 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47007 * 299.99648 * 25 23 21 29 29 C 1.46931 * 120.62741 * 181.95244 * 15 13 11 30 30 C 1.52992 * 109.46975 * 60.00120 * 8 7 6 31 31 H 1.08994 * 109.46788 * 60.00093 * 1 2 3 32 32 H 1.08996 * 109.46518 * 299.99738 * 1 2 3 33 33 H 1.08994 * 109.46733 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47205 * 119.99631 * 2 1 3 35 35 H 1.09001 * 109.47291 * 239.99850 * 2 1 3 36 36 H 1.08999 * 109.46831 * 299.99926 * 5 3 2 37 37 H 1.08994 * 109.46872 * 59.99473 * 5 3 2 38 38 H 1.08999 * 109.47356 * 299.99822 * 6 5 3 39 39 H 1.09005 * 109.47175 * 180.02562 * 6 5 3 40 40 H 1.09004 * 109.47182 * 180.02562 * 7 6 5 41 41 H 1.08999 * 109.47179 * 59.99569 * 7 6 5 42 42 H 0.96997 * 120.00272 * 95.00365 * 10 8 7 43 43 H 1.09005 * 109.58196 * 353.41544 * 16 15 13 44 44 H 1.08996 * 109.58699 * 113.83935 * 16 15 13 45 45 H 1.09003 * 109.56192 * 185.54597 * 17 16 15 46 46 H 1.09004 * 109.38399 * 65.51498 * 17 16 15 47 47 H 1.09005 * 109.45938 * 301.21807 * 18 17 16 48 48 H 1.08997 * 109.45982 * 181.26015 * 18 17 16 49 49 H 0.96999 * 120.00371 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.58634 * 246.15673 * 29 15 13 51 51 H 1.09002 * 109.58844 * 6.57951 * 29 15 13 52 52 H 1.09005 * 109.47175 * 179.97438 * 30 8 7 53 53 H 1.08999 * 109.47356 * 59.99846 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 2.1447 3.5692 -1.3072 7 6 3.6695 3.5716 -1.1812 8 6 4.0743 2.8876 0.1262 9 1 5.1605 2.8897 0.2161 10 7 3.4897 3.6117 1.2575 11 6 4.1246 4.6834 1.7723 12 8 5.1803 5.0487 1.2983 13 6 3.5285 5.4219 2.9268 14 8 2.4164 5.1370 3.3202 15 7 4.2260 6.4041 3.5310 16 6 5.5585 6.7852 3.0431 17 6 6.5488 6.7276 4.2048 18 6 6.0306 7.5906 5.3574 19 6 4.6847 7.0451 5.8403 20 1 4.8054 6.0104 6.1609 21 6 4.1904 7.8755 6.9966 22 1 4.7783 8.7081 7.3539 23 6 2.9876 7.5723 7.5986 24 7 2.2714 6.5588 7.1633 25 14 2.3745 8.6021 9.0315 26 1 2.2114 10.0118 8.5940 27 1 1.0667 8.0741 9.4965 28 1 3.3576 8.5391 10.1427 29 6 3.6708 7.1102 4.6938 30 6 3.5649 1.4450 0.1260 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 0.5138 0.8900 33 1 -0.3632 -1.0276 0.0005 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 2.0699 1.5875 -2.1492 37 1 0.5490 2.1252 -1.3969 38 1 1.7098 4.1080 -0.4654 39 1 1.8559 4.0567 -2.2384 40 1 4.0325 4.5994 -1.1806 41 1 4.1045 3.0328 -2.0230 42 1 2.6457 3.3200 1.6362 43 1 5.8731 6.0933 2.2618 44 1 5.5255 7.7992 2.6446 45 1 7.5184 7.1025 3.8767 46 1 6.6526 5.6958 4.5409 47 1 5.9041 8.6174 5.0139 48 1 6.7472 7.5683 6.1784 49 1 1.4251 6.3457 7.5866 50 1 3.4808 8.1512 4.4327 51 1 2.7404 6.6328 5.0012 52 1 3.8536 0.9575 1.0572 53 1 3.9998 0.9061 -0.7158 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347540579.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:15 Heat of formation + Delta-G solvation = -104.559704 kcal Electronic energy + Delta-G solvation = -30777.394979 eV Core-core repulsion = 26840.354723 eV Total energy + Delta-G solvation = -3937.040256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.10038 -40.55684 -39.18822 -38.52821 -35.93389 -35.14977 -33.84482 -33.42518 -31.59810 -31.22599 -29.77049 -27.63248 -26.82274 -24.99750 -24.26233 -23.51093 -23.33380 -21.82746 -21.66492 -20.46832 -20.10668 -18.87367 -18.22213 -17.77684 -17.13873 -16.75174 -16.44910 -16.42978 -16.18961 -15.66443 -15.50728 -15.34536 -14.90984 -14.76388 -14.59145 -14.44319 -14.26322 -14.13400 -13.89955 -13.59321 -13.53710 -13.22948 -13.02233 -12.92781 -12.84970 -12.61054 -12.51912 -12.29972 -12.26612 -12.16146 -11.97310 -11.73570 -11.73003 -11.61663 -11.35445 -11.16736 -11.04864 -10.99137 -10.88718 -10.55221 -10.25928 -9.93067 -9.56104 -8.12502 -6.29433 0.37445 1.36692 1.41733 1.44343 1.51175 2.16648 2.40839 2.59599 3.15450 3.31187 3.67988 3.73451 3.80166 4.12708 4.13923 4.18637 4.19499 4.31058 4.35677 4.43576 4.52802 4.55237 4.57769 4.64171 4.70020 4.75307 4.77100 4.80234 4.81094 4.90775 5.03641 5.05430 5.08048 5.14411 5.17028 5.20017 5.22319 5.25584 5.27966 5.31021 5.36074 5.39825 5.42143 5.51821 5.55295 5.60460 5.62373 5.83128 5.92882 6.02926 6.29115 6.44789 6.75762 6.83292 6.99837 7.40360 8.91135 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.002895 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.433385 B = 9669.231942 C =10946.315926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.093 4.093 4 H 0.051 0.949 5 C -0.108 4.108 6 C -0.122 4.122 7 C -0.125 4.125 8 C 0.139 3.861 9 H 0.090 0.910 10 N -0.680 5.680 11 C 0.522 3.478 12 O -0.519 6.519 13 C 0.482 3.518 14 O -0.561 6.561 15 N -0.573 5.573 16 C 0.048 3.952 17 C -0.123 4.123 18 C -0.107 4.107 19 C 0.040 3.960 20 H -0.011 1.011 21 C -0.537 4.537 22 H 0.062 0.938 23 C 0.011 3.989 24 N -0.914 5.914 25 Si 0.960 3.040 26 H -0.268 1.268 27 H -0.287 1.287 28 H -0.269 1.269 29 C 0.120 3.880 30 C -0.115 4.115 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.099 0.901 42 H 0.412 0.588 43 H 0.159 0.841 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.047 0.953 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.261 0.739 50 H 0.042 0.958 51 H 0.085 0.915 52 H 0.069 0.931 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 -11.922 -20.449 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.112 4.112 4 H 0.070 0.930 5 C -0.145 4.145 6 C -0.159 4.159 7 C -0.163 4.163 8 C 0.036 3.964 9 H 0.108 0.892 10 N -0.332 5.332 11 C 0.303 3.697 12 O -0.398 6.398 13 C 0.265 3.735 14 O -0.441 6.441 15 N -0.304 5.304 16 C -0.072 4.072 17 C -0.161 4.161 18 C -0.145 4.145 19 C 0.021 3.979 20 H 0.007 0.993 21 C -0.576 4.576 22 H 0.081 0.919 23 C -0.188 4.188 24 N -0.553 5.553 25 Si 0.785 3.215 26 H -0.193 1.193 27 H -0.212 1.212 28 H -0.194 1.194 29 C -0.002 4.002 30 C -0.153 4.153 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.250 0.750 43 H 0.175 0.825 44 H 0.087 0.913 45 H 0.118 0.882 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.060 0.940 51 H 0.103 0.897 52 H 0.088 0.912 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.547 -11.918 -20.559 23.900 hybrid contribution -1.166 0.697 1.644 2.132 sum 1.382 -11.221 -18.915 22.037 Atomic orbital electron populations 1.21842 0.96096 1.01780 1.01707 1.21516 0.95773 0.95307 1.02546 1.21224 0.95040 0.96818 0.98120 0.93010 1.21603 1.00982 0.94557 0.97371 1.21523 0.95243 0.97692 1.01481 1.21901 0.96641 1.00758 0.97036 1.21356 0.98724 0.91939 0.84385 0.89188 1.46047 1.25700 1.27907 1.33555 1.19908 0.84565 0.81879 0.83316 1.90233 1.22205 1.66128 1.61216 1.20584 0.85992 0.81963 0.84999 1.90730 1.20669 1.66900 1.65803 1.48489 1.18849 1.33382 1.29714 1.23307 0.80284 1.04092 0.99508 1.21807 0.99175 0.99763 0.95366 1.21563 0.96776 0.98809 0.97355 1.18890 0.91961 0.94874 0.92183 0.99259 1.21457 1.05419 1.15075 1.15628 0.91939 1.25891 0.97045 0.96143 0.99756 1.70047 1.13915 1.28985 1.42308 0.85586 0.77360 0.79078 0.79502 1.19309 1.21241 1.19388 1.21950 1.00585 0.93999 0.83632 1.21883 0.95780 0.93438 1.04170 0.92039 0.93900 0.92304 0.92204 0.90495 0.90100 0.91606 0.94146 0.91131 0.93189 0.88297 0.75037 0.82507 0.91280 0.88241 0.93424 0.92539 0.92742 0.92954 0.93982 0.89680 0.91247 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.67 71.98 0.70 -1.37 16 2 C -0.11 -1.39 5.40 30.60 0.17 -1.22 16 3 C -0.09 -1.32 2.02 -10.79 -0.02 -1.35 16 4 H 0.05 0.96 6.50 -2.39 -0.02 0.94 16 5 C -0.11 -1.39 4.96 30.59 0.15 -1.23 16 6 C -0.12 -2.00 5.76 30.59 0.18 -1.82 16 7 C -0.13 -2.08 5.60 30.60 0.17 -1.90 16 8 C 0.14 2.57 2.78 44.99 0.13 2.69 16 9 H 0.09 1.76 7.58 -2.39 -0.02 1.75 16 10 N -0.68 -17.49 4.22 -443.87 -1.87 -19.36 16 11 C 0.52 17.17 7.77 87.27 0.68 17.85 16 12 O -0.52 -16.87 12.68 -3.24 -0.04 -16.91 16 13 C 0.48 20.34 7.76 87.27 0.68 21.02 16 14 O -0.56 -27.27 15.91 -3.25 -0.05 -27.32 16 15 N -0.57 -24.85 2.98 -821.31 -2.45 -27.29 16 16 C 0.05 1.70 6.20 86.22 0.53 2.23 16 17 C -0.12 -4.22 6.06 30.53 0.19 -4.04 16 18 C -0.11 -4.42 5.11 30.62 0.16 -4.27 16 19 C 0.04 2.08 2.25 -11.46 -0.03 2.06 16 20 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 21 C -0.54 -29.94 8.57 25.60 0.22 -29.72 16 22 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 23 C 0.01 0.64 5.30 84.66 0.45 1.08 16 24 N -0.91 -55.12 11.39 21.45 0.24 -54.87 16 25 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 29 C 0.12 6.16 5.40 86.36 0.47 6.62 16 30 C -0.12 -1.55 4.89 30.59 0.15 -1.40 16 31 H 0.06 0.74 6.56 -2.39 -0.02 0.72 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.86 6.56 -2.39 -0.02 0.84 16 38 H 0.04 0.86 7.60 -2.39 -0.02 0.84 16 39 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.41 10.83 6.36 -92.71 -0.59 10.24 16 43 H 0.16 5.26 3.79 -82.29 -0.31 4.94 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 45 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 48 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 50 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.08 5.07 5.13 -2.39 -0.01 5.06 16 52 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 53 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -67.77 398.10 2.81 -64.96 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.00 Total: 29.27 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.95 Total: 5.24 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -4.08 Total: -101.53 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -0.09 Total: -44.22 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -67.77 2.81 -64.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347540579.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.602 kcal (2) G-P(sol) polarization free energy of solvation -67.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds