Wall clock time and date at job start Tue Mar 31 2020 19:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.47051 * 2 1 4 4 C 1.52994 * 109.46804 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.50076 * 304.93410 * 4 3 2 6 6 C 1.53042 * 109.52267 * 184.85358 * 4 3 2 7 7 C 1.53048 * 109.53803 * 178.66698 * 6 4 3 8 8 C 1.53192 * 109.31223 * 61.36648 * 7 6 4 9 9 N 1.46966 * 108.88760 * 305.44280 * 8 7 6 10 10 C 1.34775 * 120.65207 * 233.53591 * 9 8 7 11 11 O 1.21352 * 119.99724 * 174.76137 * 10 9 8 12 12 C 1.49451 * 120.00017 * 354.76235 * 10 9 8 13 13 O 1.21352 * 119.99944 * 85.41465 * 12 10 9 14 14 N 1.34774 * 120.00131 * 265.41104 * 12 10 9 15 15 C 1.46930 * 120.62882 * 4.78492 * 14 12 10 16 16 C 1.53620 * 108.54067 * 126.37043 * 15 14 12 17 17 C 1.53042 * 109.24593 * 54.85629 * 16 15 14 18 18 C 1.50699 * 109.45981 * 178.49102 * 17 16 15 19 19 H 1.07996 * 119.99806 * 120.06893 * 18 17 16 20 20 C 1.37877 * 120.00026 * 300.06539 * 18 17 16 21 21 N 1.31516 * 119.99944 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99723 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47583 * 60.00019 * 22 20 18 24 24 H 1.48502 * 109.46826 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47103 * 299.99670 * 22 20 18 26 26 C 1.53044 * 109.53631 * 298.50990 * 17 16 15 27 27 C 1.46921 * 120.63161 * 185.06370 * 14 12 10 28 28 C 1.46927 * 118.71521 * 53.35574 * 9 8 7 29 29 H 1.09005 * 109.46698 * 300.00034 * 1 2 3 30 30 H 1.08996 * 109.46777 * 59.99718 * 1 2 3 31 31 H 1.08999 * 109.47014 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46698 * 239.99966 * 2 1 3 33 33 H 1.08996 * 109.46777 * 120.00281 * 2 1 3 34 34 H 1.08996 * 109.46950 * 59.99971 * 3 2 1 35 35 H 1.09001 * 109.46865 * 299.99771 * 3 2 1 36 36 H 1.09003 * 109.46221 * 298.68797 * 6 4 3 37 37 H 1.09002 * 109.45909 * 58.64869 * 6 4 3 38 38 H 1.08998 * 109.49702 * 181.31778 * 7 6 4 39 39 H 1.09000 * 109.49531 * 301.41845 * 7 6 4 40 40 H 1.08997 * 109.58423 * 65.14889 * 8 7 6 41 41 H 1.08996 * 109.58445 * 185.57706 * 8 7 6 42 42 H 1.08997 * 109.58604 * 246.19914 * 15 14 12 43 43 H 1.08995 * 109.58531 * 6.62414 * 15 14 12 44 44 H 1.09005 * 109.63686 * 294.86470 * 16 15 14 45 45 H 1.08998 * 109.45638 * 174.74055 * 16 15 14 46 46 H 1.08997 * 109.46092 * 58.52791 * 17 16 15 47 47 H 0.97002 * 119.99760 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.49579 * 301.41671 * 26 17 16 49 49 H 1.08993 * 109.52457 * 181.33033 * 26 17 16 50 50 H 1.08999 * 109.58925 * 353.37747 * 27 14 12 51 51 H 1.09008 * 109.58421 * 113.65475 * 27 14 12 52 52 H 1.09001 * 109.58538 * 186.78030 * 28 9 8 53 53 H 1.09005 * 109.58632 * 66.49647 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9342 0.8539 0.8415 6 6 4.0816 2.8797 0.1214 7 6 5.6117 2.8773 0.1542 8 6 6.1456 2.2835 -1.1531 9 7 5.5441 0.9577 -1.3540 10 6 6.3196 -0.1230 -1.5710 11 8 5.8179 -1.2257 -1.6407 12 6 7.7975 0.0368 -1.7259 13 8 8.5109 0.0641 -0.7447 14 7 8.3378 0.1504 -2.9553 15 6 7.4802 0.2241 -4.1461 16 6 7.8652 1.4761 -4.9487 17 6 9.3641 1.4374 -5.2555 18 6 9.7402 2.6451 -6.0747 19 1 10.4701 3.3466 -5.6986 20 6 9.1525 2.8544 -7.3042 21 7 8.2633 2.0003 -7.7619 22 14 9.6193 4.3511 -8.3198 23 1 11.0732 4.3124 -8.6192 24 1 8.8514 4.3458 -9.5909 25 1 9.3037 5.5853 -7.5566 26 6 10.1550 1.4435 -3.9453 27 6 9.7958 0.1968 -3.1309 28 6 4.0808 0.8323 -1.3097 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.7376 3.4614 -0.7338 37 1 3.6993 3.3244 1.0403 38 1 5.9748 3.8991 0.2647 39 1 5.9566 2.2752 0.9948 40 1 5.8779 2.9337 -1.9859 41 1 7.2298 2.1880 -1.0951 42 1 7.6279 -0.6655 -4.7584 43 1 6.4360 0.2908 -3.8407 44 1 7.6360 2.3690 -4.3670 45 1 7.3032 1.4959 -5.8823 46 1 9.5968 0.5319 -5.8159 47 1 7.8495 2.1478 -8.6268 48 1 9.9041 2.3366 -3.3731 49 1 11.2227 1.4398 -4.1644 50 1 10.2799 0.2454 -2.1555 51 1 10.1287 -0.6963 -3.6599 52 1 3.8028 -0.2206 -1.3551 53 1 3.6429 1.3627 -2.1553 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348251529.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:01 Heat of formation + Delta-G solvation = -112.003158 kcal Electronic energy + Delta-G solvation = -31001.192296 eV Core-core repulsion = 27063.829268 eV Total energy + Delta-G solvation = -3937.363028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.22279 -40.44556 -38.97963 -38.47632 -36.28952 -35.42365 -33.76741 -33.12355 -32.06129 -31.82157 -28.69607 -27.60346 -27.02824 -25.34318 -24.22431 -23.90500 -23.43056 -21.84081 -21.40815 -20.80163 -19.79759 -18.96286 -18.33879 -18.10202 -17.64137 -16.62931 -16.51596 -16.03214 -16.02008 -15.67385 -15.34077 -15.16430 -14.94107 -14.88114 -14.87414 -14.58780 -14.40835 -14.14010 -14.08054 -13.95969 -13.39339 -13.33880 -13.21295 -13.00371 -12.78857 -12.68389 -12.55203 -12.48723 -12.19405 -12.16867 -11.99369 -11.94810 -11.90089 -11.53574 -11.49383 -11.42064 -11.10462 -11.03727 -10.92763 -10.68853 -10.39462 -9.89550 -9.80853 -8.06167 -6.19134 0.90090 0.94359 1.42887 1.45315 1.46723 1.53240 2.19288 2.46176 2.98843 3.21128 3.59857 3.78524 3.82480 3.90348 3.96595 4.09044 4.17338 4.24748 4.26473 4.29378 4.33505 4.37100 4.49729 4.51103 4.54427 4.55977 4.71605 4.78134 4.78939 4.83176 4.84094 4.89665 4.90859 5.01564 5.08418 5.13761 5.14028 5.17853 5.20687 5.23877 5.33320 5.34350 5.40611 5.42835 5.46096 5.54080 5.64466 5.91967 5.97567 6.06373 6.11668 6.39067 6.57648 6.63379 6.90465 7.49035 8.97359 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.003090 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.672458 B = 9060.774014 C = 9854.063604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.103 4.103 4 C -0.096 4.096 5 H 0.062 0.938 6 C -0.110 4.110 7 C -0.128 4.128 8 C 0.098 3.902 9 N -0.586 5.586 10 C 0.519 3.481 11 O -0.549 6.549 12 C 0.512 3.488 13 O -0.554 6.554 14 N -0.579 5.579 15 C 0.115 3.885 16 C -0.106 4.106 17 C 0.044 3.956 18 C -0.530 4.530 19 H 0.052 0.948 20 C 0.018 3.982 21 N -0.913 5.913 22 Si 0.947 3.053 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.272 1.272 26 C -0.110 4.110 27 C 0.112 3.888 28 C 0.108 3.892 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.081 0.919 46 H 0.003 0.997 47 H 0.261 0.739 48 H 0.052 0.948 49 H 0.072 0.928 50 H 0.090 0.910 51 H 0.077 0.923 52 H 0.081 0.919 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.879 2.183 14.682 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.141 4.141 4 C -0.115 4.115 5 H 0.080 0.920 6 C -0.147 4.147 7 C -0.166 4.166 8 C -0.024 4.024 9 N -0.319 5.319 10 C 0.302 3.698 11 O -0.427 6.427 12 C 0.295 3.705 13 O -0.433 6.433 14 N -0.312 5.312 15 C -0.007 4.007 16 C -0.144 4.144 17 C 0.025 3.975 18 C -0.568 4.568 19 H 0.071 0.929 20 C -0.181 4.181 21 N -0.552 5.552 22 Si 0.774 3.226 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.197 1.197 26 C -0.148 4.148 27 C -0.009 4.009 28 C -0.013 4.013 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.099 0.901 46 H 0.021 0.979 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.091 0.909 50 H 0.109 0.891 51 H 0.095 0.905 52 H 0.099 0.901 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.876 1.595 14.979 19.817 hybrid contribution 0.520 0.329 -0.940 1.123 sum -12.356 1.923 14.040 18.801 Atomic orbital electron populations 1.21753 0.95021 1.01732 1.02226 1.21618 0.96589 0.97192 1.01575 1.21560 0.92247 0.96787 1.03483 1.21515 0.96705 0.97239 0.96068 0.91999 1.21597 0.93828 0.95430 1.03880 1.21885 0.97162 1.02161 0.95345 1.22051 0.97774 0.82305 1.00297 1.48241 1.07835 1.07632 1.68235 1.20211 0.87234 0.85257 0.77120 1.90744 1.73914 1.25790 1.52285 1.20327 0.89055 0.77160 0.83918 1.90729 1.61985 1.52138 1.38433 1.48313 1.08779 1.68452 1.05631 1.22026 0.92794 1.00484 0.85373 1.21832 1.00228 0.93500 0.98874 1.18631 0.91751 0.95585 0.91496 1.21469 1.23394 1.09176 1.02760 0.92947 1.25624 0.95093 0.98741 0.98595 1.69943 1.28445 1.37208 1.19647 0.85778 0.78215 0.80553 0.78070 1.20106 1.21256 1.19731 1.21848 1.00582 0.95837 0.96567 1.21856 0.78021 0.99565 1.01443 1.22055 0.76726 1.03016 0.99534 0.92096 0.92355 0.92989 0.92823 0.92684 0.90168 0.90711 0.90328 0.89583 0.88280 0.92409 0.89107 0.91539 0.91326 0.90785 0.94196 0.90074 0.97880 0.92984 0.92943 0.90947 0.89142 0.90494 0.90075 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.99 0.71 -1.12 16 2 C -0.13 -1.93 5.69 30.60 0.17 -1.76 16 3 C -0.10 -1.28 4.69 30.59 0.14 -1.14 16 4 C -0.10 -1.56 2.34 -10.72 -0.03 -1.59 16 5 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 6 C -0.11 -1.48 5.17 30.62 0.16 -1.32 16 7 C -0.13 -2.19 6.08 30.67 0.19 -2.00 16 8 C 0.10 2.26 6.32 86.35 0.55 2.81 16 9 N -0.59 -15.78 2.98 -820.37 -2.44 -18.23 16 10 C 0.52 17.95 5.49 87.27 0.48 18.43 16 11 O -0.55 -21.60 16.51 -3.25 -0.05 -21.65 16 12 C 0.51 18.93 5.61 87.27 0.49 19.42 16 13 O -0.55 -22.44 16.31 -3.25 -0.05 -22.49 16 14 N -0.58 -20.92 2.97 -819.65 -2.43 -23.35 16 15 C 0.12 4.23 6.35 86.51 0.55 4.78 16 16 C -0.11 -4.49 5.17 30.82 0.16 -4.33 16 17 C 0.04 2.01 2.06 -11.51 -0.02 1.98 16 18 C -0.53 -27.08 8.56 25.60 0.22 -26.86 16 19 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 20 C 0.02 0.96 5.30 84.65 0.45 1.41 16 21 N -0.91 -49.10 11.30 21.45 0.24 -48.85 16 22 Si 0.95 41.26 29.54 68.60 2.03 43.29 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 C -0.11 -4.19 5.30 30.67 0.16 -4.03 16 27 C 0.11 3.89 6.44 86.36 0.56 4.45 16 28 C 0.11 2.32 5.33 86.36 0.46 2.78 16 29 H 0.06 0.64 8.14 -2.38 -0.02 0.63 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.91 6.70 -2.38 -0.02 0.90 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 1.84 6.23 -2.39 -0.01 1.82 16 42 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.07 2.54 6.37 -2.39 -0.02 2.53 16 44 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.08 3.92 6.03 -2.39 -0.01 3.91 16 46 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 48 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 50 H 0.09 3.03 7.00 -2.39 -0.02 3.01 16 51 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 52 H 0.08 2.02 5.71 -2.39 -0.01 2.01 16 53 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -62.28 405.53 3.55 -58.73 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.87 Total: 20.66 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.40 Total: 11.90 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -4.63 Total: -90.44 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.11 Total: -44.15 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -62.28 3.55 -58.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348251529.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.275 kcal (2) G-P(sol) polarization free energy of solvation -62.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds