Wall clock time and date at job start Tue Mar 31 2020 20:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00404 * 2 1 4 4 C 1.52998 * 109.47216 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47278 * 59.99694 * 4 3 2 6 6 C 1.52995 * 109.47300 * 299.99762 * 4 3 2 7 7 C 1.50703 * 109.47136 * 179.97438 * 4 3 2 8 8 O 1.21277 * 119.99634 * 352.43587 * 7 4 3 9 9 N 1.34771 * 120.00193 * 172.43206 * 7 4 3 10 10 C 1.48143 * 127.83926 * 181.84228 * 9 7 4 11 11 C 1.54357 * 104.62647 * 219.42302 * 10 9 7 12 12 H 1.09002 * 110.92054 * 216.48857 * 11 10 9 13 13 C 1.54162 * 105.04268 * 336.38415 * 11 10 9 14 14 H 1.08996 * 110.87747 * 239.94364 * 13 11 10 15 15 C 1.48157 * 127.83521 * 1.80290 * 9 7 4 16 16 C 1.53021 * 110.22965 * 116.84912 * 13 11 10 17 17 H 1.09004 * 109.64450 * 179.53629 * 16 13 11 18 18 C 1.53067 * 109.16070 * 300.29640 * 16 13 11 19 19 C 1.55352 * 109.64864 * 58.70588 * 18 16 13 20 20 C 1.53207 * 108.99936 * 93.56610 * 11 10 9 21 21 H 1.09005 * 110.51998 * 67.90106 * 20 11 10 22 22 N 1.47653 * 108.07280 * 188.96652 * 20 11 10 23 23 C 1.36933 * 122.04367 * 238.62262 * 22 20 11 24 24 H 1.08001 * 119.99806 * 0.02562 * 23 22 20 25 25 C 1.38808 * 120.00230 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99928 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00240 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47254 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.46900 * 120.00315 * 27 25 23 30 30 H 1.48501 * 109.47111 * 240.00199 * 27 25 23 31 31 C 1.47584 * 115.91506 * 58.59873 * 22 20 11 32 32 H 1.08996 * 109.47085 * 300.00581 * 1 2 3 33 33 H 1.09004 * 109.46675 * 60.00355 * 1 2 3 34 34 H 1.08997 * 109.47467 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47161 * 59.99555 * 3 2 1 36 36 H 1.09001 * 109.46772 * 299.99820 * 3 2 1 37 37 H 1.08991 * 109.46862 * 191.18166 * 5 4 3 38 38 H 1.08994 * 109.47049 * 311.19087 * 5 4 3 39 39 H 1.09006 * 109.46897 * 71.18800 * 5 4 3 40 40 H 1.09005 * 109.46853 * 293.08826 * 6 4 3 41 41 H 1.08999 * 109.47065 * 53.08178 * 6 4 3 42 42 H 1.08999 * 109.47482 * 173.08783 * 6 4 3 43 43 H 1.09009 * 110.40443 * 338.20873 * 10 9 7 44 44 H 1.09005 * 110.40674 * 100.51368 * 10 9 7 45 45 H 1.08997 * 110.41286 * 21.61606 * 15 9 7 46 46 H 1.08993 * 110.51295 * 259.21896 * 15 9 7 47 47 H 1.09002 * 109.38614 * 179.40759 * 18 16 13 48 48 H 1.09007 * 109.38086 * 299.08511 * 18 16 13 49 49 H 1.09003 * 109.68017 * 241.12851 * 19 18 16 50 50 H 1.09001 * 109.33431 * 121.15610 * 19 18 16 51 51 H 0.97004 * 120.00428 * 179.97438 * 26 25 23 52 52 H 1.09003 * 109.99107 * 119.63828 * 31 22 20 53 53 H 1.08993 * 109.99033 * 240.92396 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9875 0.4249 -1.2483 6 6 3.9865 0.4255 1.2502 7 6 4.1486 2.5612 0.0000 8 8 3.4441 3.5386 -0.1391 9 7 5.4795 2.7063 0.1541 10 6 6.2550 3.9670 0.2176 11 6 7.5440 3.6722 -0.5787 12 1 8.4031 4.1672 -0.1259 13 6 7.7031 2.1396 -0.5295 14 1 8.6437 1.8617 -0.0541 15 6 6.4990 1.6411 0.2994 16 6 7.6120 1.5526 -1.9397 17 1 7.7338 0.4703 -1.8947 18 6 6.2507 1.9056 -2.5439 19 6 6.0808 3.4493 -2.5826 20 6 7.3459 4.1176 -2.0312 21 1 7.2714 5.2034 -2.0911 22 7 8.4964 3.6333 -2.8198 23 6 9.3127 4.4865 -3.5132 24 1 9.1239 5.5497 -3.4935 25 6 10.3832 3.9850 -4.2407 26 7 10.6135 2.6894 -4.2643 27 14 11.4963 5.1489 -5.1873 28 1 11.0264 6.5451 -5.0000 29 1 12.8872 5.0233 -4.6828 30 1 11.4603 4.8034 -6.6311 31 6 8.7133 2.1735 -2.8145 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 -1.0276 0.0005 35 1 1.6887 1.8464 0.8899 36 1 1.6887 1.8463 -0.8900 37 1 5.0417 0.1650 -1.1537 38 1 3.3969 -0.4850 -1.3536 39 1 3.8458 1.0539 -2.1272 40 1 3.7739 1.0247 2.1357 41 1 3.4491 -0.5206 1.3142 42 1 5.0575 0.2319 1.1910 43 1 5.6978 4.7798 -0.2486 44 1 6.4933 4.2150 1.2519 45 1 6.1248 0.6995 -0.1022 46 1 6.7808 1.5222 1.3455 47 1 6.1860 1.4981 -3.5528 48 1 5.4597 1.4747 -1.9300 49 1 5.2232 3.7396 -1.9757 50 1 5.9208 3.7691 -3.6123 51 1 11.3614 2.3388 -4.7730 52 1 8.6466 1.7831 -3.8301 53 1 9.6907 1.9435 -2.3905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479616429.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:31 Heat of formation + Delta-G solvation = -44.534303 kcal Electronic energy + Delta-G solvation = -32809.678028 eV Core-core repulsion = 28875.240668 eV Total energy + Delta-G solvation = -3934.437359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.59617 -40.50675 -38.76455 -37.15965 -36.00849 -34.79559 -33.20466 -31.76096 -31.55613 -28.96111 -28.48145 -28.18060 -27.04310 -26.55163 -25.59519 -23.65004 -22.92979 -22.27477 -21.95925 -20.12480 -19.10079 -18.00269 -17.88558 -17.55974 -17.15446 -16.83991 -16.65248 -16.34144 -16.20541 -15.82460 -15.49300 -15.44053 -14.74533 -14.45029 -14.35527 -14.10335 -14.05118 -13.76049 -13.49100 -13.39738 -13.16484 -13.13129 -12.97124 -12.81780 -12.77705 -12.70791 -12.57904 -12.50853 -12.20693 -12.18948 -12.09718 -12.05676 -11.88206 -11.71950 -11.48236 -11.10671 -10.80839 -10.73551 -10.63624 -10.57512 -10.47447 -9.61543 -8.80482 -7.73781 -5.11696 1.44652 1.45543 1.54962 1.59996 1.87009 2.50852 2.86663 3.35224 3.38817 3.52425 3.63706 3.77325 3.82651 3.86791 3.91557 4.14190 4.19984 4.28491 4.31964 4.35772 4.39970 4.47674 4.49520 4.57677 4.61231 4.61964 4.63771 4.69657 4.74443 4.78649 4.84103 4.86733 4.88564 4.91778 4.93921 4.98417 5.04373 5.07004 5.13127 5.22652 5.32111 5.36102 5.37122 5.44265 5.52172 5.59680 5.61364 5.81855 5.94825 6.16177 6.30936 6.60272 7.11732 7.20881 7.91543 8.41223 9.28317 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.003288 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.817391 B = 8512.766444 C = 8641.383019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.091 3.909 4 C -0.072 4.072 5 C -0.148 4.148 6 C -0.142 4.142 7 C 0.543 3.457 8 O -0.586 6.586 9 N -0.605 5.605 10 C 0.116 3.884 11 C -0.101 4.101 12 H 0.081 0.919 13 C -0.080 4.080 14 H 0.092 0.908 15 C 0.101 3.899 16 C -0.102 4.102 17 H 0.088 0.912 18 C -0.123 4.123 19 C -0.120 4.120 20 C 0.173 3.827 21 H 0.050 0.950 22 N -0.616 5.616 23 C -0.241 4.241 24 H 0.072 0.928 25 C -0.064 4.064 26 N -0.947 5.947 27 Si 0.968 3.032 28 H -0.271 1.271 29 H -0.291 1.291 30 H -0.297 1.297 31 C 0.215 3.785 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.033 0.967 48 H 0.104 0.896 49 H 0.060 0.940 50 H 0.022 0.978 51 H 0.243 0.757 52 H 0.004 0.996 53 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.549 -8.444 14.324 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.014 3.986 4 C -0.075 4.075 5 C -0.205 4.205 6 C -0.199 4.199 7 C 0.333 3.667 8 O -0.467 6.467 9 N -0.337 5.337 10 C -0.007 4.007 11 C -0.122 4.122 12 H 0.100 0.900 13 C -0.099 4.099 14 H 0.110 0.890 15 C -0.021 4.021 16 C -0.121 4.121 17 H 0.106 0.894 18 C -0.160 4.160 19 C -0.159 4.159 20 C 0.067 3.933 21 H 0.068 0.932 22 N -0.340 5.340 23 C -0.371 4.371 24 H 0.090 0.910 25 C -0.257 4.257 26 N -0.597 5.597 27 Si 0.798 3.202 28 H -0.196 1.196 29 H -0.219 1.219 30 H -0.224 1.224 31 C 0.091 3.909 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.123 0.877 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.112 0.888 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.052 0.948 48 H 0.122 0.878 49 H 0.079 0.921 50 H 0.040 0.960 51 H 0.053 0.947 52 H 0.022 0.978 53 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -15.778 -8.145 14.133 22.694 hybrid contribution 0.802 1.319 -1.419 2.097 sum -14.975 -6.825 12.714 20.796 Atomic orbital electron populations 1.22926 0.79536 1.04020 1.00538 1.87767 1.21135 1.26985 1.95510 1.22048 0.91467 0.84508 1.00592 1.20627 0.94625 0.91875 1.00337 1.22218 1.02710 1.00977 0.94576 1.22035 1.03274 1.00747 0.93858 1.20343 0.80395 0.91065 0.74858 1.90676 1.61148 1.42510 1.52361 1.48868 1.05077 1.09464 1.70263 1.22350 0.90627 0.87186 1.00498 1.22518 0.97037 0.96862 0.95808 0.90022 1.21989 0.98831 0.94095 0.94985 0.89007 1.23020 0.86454 0.91363 1.01236 1.21773 0.95394 0.99797 0.95096 0.89365 1.22453 0.98372 0.95081 1.00109 1.22335 0.97960 0.97021 0.98599 1.20744 0.86684 0.95559 0.90352 0.93172 1.44836 1.30043 1.03217 1.55886 1.19633 1.05585 0.90010 1.21867 0.91043 1.25493 1.00612 0.97453 1.02112 1.70273 1.31450 1.11480 1.46456 0.85155 0.78711 0.78570 0.77792 1.19602 1.21857 1.22432 1.20687 0.93507 0.81735 0.94961 0.93401 0.93945 0.87705 0.93037 0.93877 0.89753 0.89144 0.93158 0.92338 0.89767 0.89721 0.91736 0.88824 0.87946 0.87694 0.94811 0.87780 0.92110 0.95951 0.94740 0.97779 0.96649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.39 -7.52 9.06 -148.98 -1.35 -8.87 16 3 C 0.09 1.98 4.13 71.98 0.30 2.27 16 4 C -0.07 -1.49 0.58 -52.93 -0.03 -1.53 16 5 C -0.15 -2.99 6.67 71.98 0.48 -2.51 16 6 C -0.14 -2.21 8.00 71.98 0.58 -1.63 16 7 C 0.54 14.61 5.12 87.66 0.45 15.05 16 8 O -0.59 -20.24 15.93 -3.02 -0.05 -20.28 16 9 N -0.61 -14.78 1.70 -807.90 -1.38 -16.16 16 10 C 0.12 3.08 5.80 86.52 0.50 3.59 16 11 C -0.10 -3.19 3.37 -9.87 -0.03 -3.22 16 12 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 13 C -0.08 -2.22 3.15 -9.90 -0.03 -2.25 16 14 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 15 C 0.10 1.99 3.90 86.55 0.34 2.33 16 16 C -0.10 -3.46 2.75 -10.52 -0.03 -3.49 16 17 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 18 C -0.12 -4.16 5.08 31.43 0.16 -4.00 16 19 C -0.12 -4.59 5.36 31.51 0.17 -4.42 16 20 C 0.17 7.03 3.03 44.95 0.14 7.16 16 21 H 0.05 2.12 7.99 -2.38 -0.02 2.11 16 22 N -0.62 -30.77 2.87 -670.12 -1.93 -32.69 16 23 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 24 H 0.07 3.92 7.79 -2.91 -0.02 3.89 16 25 C -0.06 -3.64 5.47 84.86 0.46 -3.18 16 26 N -0.95 -56.30 9.76 21.65 0.21 -56.09 16 27 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 28 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 29 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 30 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 31 C 0.22 10.34 4.32 86.42 0.37 10.71 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.04 1.06 8.02 -2.39 -0.02 1.04 16 37 H 0.08 1.56 4.33 -2.39 -0.01 1.55 16 38 H 0.09 1.64 7.37 -2.39 -0.02 1.63 16 39 H 0.05 1.21 7.07 -2.38 -0.02 1.19 16 40 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.08 1.22 7.48 -2.39 -0.02 1.20 16 42 H 0.08 1.07 4.85 -2.39 -0.01 1.06 16 43 H 0.06 1.97 6.96 -2.38 -0.02 1.95 16 44 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.10 1.75 3.30 -2.39 -0.01 1.75 16 46 H 0.11 1.48 8.05 -2.39 -0.02 1.46 16 47 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.10 2.85 0.64 -2.38 0.00 2.85 16 49 H 0.06 2.24 4.89 -2.39 -0.01 2.23 16 50 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 52 H 0.00 0.23 7.21 -2.39 -0.02 0.21 16 53 H 0.02 0.82 7.24 -2.39 -0.02 0.81 16 Total: -1.00 -70.54 369.00 4.36 -66.18 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.91 Total: 15.62 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 5.91 Total: 3.84 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -3.09 Total: -104.94 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -1.40 Total: -29.15 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -70.54 4.36 -66.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479616429.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.649 kcal (2) G-P(sol) polarization free energy of solvation -70.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds