Wall clock time and date at job start Tue Mar 31 2020 21:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.46712 * 2 1 4 4 C 1.52999 * 109.46918 * 240.00218 * 2 1 3 5 5 C 1.50702 * 109.47323 * 59.99880 * 4 2 1 6 6 O 1.21272 * 120.00043 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99817 * 179.97438 * 5 4 2 8 8 C 1.46501 * 120.00169 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47340 * 179.97438 * 8 7 5 10 10 H 1.09005 * 109.43075 * 59.18582 * 9 8 7 11 11 C 1.53151 * 109.39847 * 179.06770 * 9 8 7 12 12 C 1.53705 * 108.87639 * 66.15672 * 11 9 8 13 13 H 1.08996 * 112.57848 * 187.92868 * 12 11 9 14 14 C 1.54603 * 107.83107 * 312.22494 * 12 11 9 15 15 C 1.55894 * 104.89966 * 88.65155 * 14 12 11 16 16 C 1.54610 * 103.99579 * 0.02562 * 15 14 12 17 17 H 1.08996 * 112.19175 * 147.19871 * 16 15 14 18 18 C 1.53143 * 109.44027 * 299.27161 * 9 8 7 19 19 N 1.48294 * 104.81368 * 25.18433 * 16 15 14 20 20 C 1.36931 * 128.21039 * 138.13159 * 19 16 15 21 21 H 1.08003 * 120.00140 * 348.93309 * 20 19 16 22 22 C 1.38812 * 120.00098 * 168.93584 * 20 19 16 23 23 N 1.31623 * 120.00269 * 340.24392 * 22 20 19 24 24 Si 1.86799 * 120.00127 * 160.24219 * 22 20 19 25 25 H 1.48503 * 109.47310 * 84.99654 * 24 22 20 26 26 H 1.48498 * 109.47308 * 204.99447 * 24 22 20 27 27 H 1.48504 * 109.47154 * 324.99457 * 24 22 20 28 28 C 1.52996 * 109.47206 * 119.99927 * 2 1 3 29 29 C 1.52998 * 117.49869 * 13.74500 * 28 2 1 30 30 C 1.53001 * 117.49622 * 305.08713 * 28 2 1 31 31 H 1.08997 * 109.47182 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47112 * 300.00019 * 1 2 3 33 33 H 1.09004 * 109.47452 * 60.00183 * 1 2 3 34 34 H 0.96695 * 113.99247 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46891 * 299.99807 * 4 2 1 36 36 H 1.08999 * 109.46586 * 180.02562 * 4 2 1 37 37 H 0.97008 * 120.00250 * 0.02562 * 7 5 4 38 38 H 1.09009 * 109.46475 * 60.00136 * 8 7 5 39 39 H 1.08998 * 109.47295 * 300.00699 * 8 7 5 40 40 H 1.09002 * 109.56790 * 185.97645 * 11 9 8 41 41 H 1.09000 * 109.56709 * 306.33558 * 11 9 8 42 42 H 1.09003 * 110.37996 * 207.47999 * 14 12 11 43 43 H 1.08999 * 110.38725 * 329.84795 * 14 12 11 44 44 H 1.09002 * 110.92618 * 241.36280 * 15 14 12 45 45 H 1.08998 * 110.56500 * 118.50230 * 15 14 12 46 46 H 1.09005 * 109.56824 * 53.68528 * 18 9 8 47 47 H 1.08993 * 109.57207 * 173.93117 * 18 9 8 48 48 H 0.96993 * 120.00431 * 180.02562 * 23 22 20 49 49 H 1.08992 * 115.54713 * 159.41917 * 28 2 1 50 50 H 1.09001 * 117.50070 * 0.02562 * 29 28 2 51 51 H 1.09003 * 117.49847 * 145.01848 * 29 28 2 52 52 H 1.09004 * 117.50053 * 214.97819 * 30 28 2 53 53 H 1.08998 * 117.50449 * 0.02562 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 8 0.8400 0.9749 -2.3685 7 7 1.8636 -0.4710 -3.7038 8 6 1.3748 0.2193 -4.9000 9 6 1.8859 -0.5012 -6.1492 10 1 1.5354 -1.5333 -6.1415 11 6 1.3549 0.2080 -7.3984 12 6 1.9774 1.6112 -7.4761 13 1 1.5378 2.2210 -8.2654 14 6 1.8378 2.2688 -6.0839 15 6 3.1201 1.8404 -5.3078 16 6 3.8966 0.9682 -6.3211 17 1 4.9760 1.0596 -6.2008 18 6 3.4172 -0.4831 -6.1573 19 7 3.4394 1.4355 -7.6521 20 6 4.1893 1.6530 -8.7770 21 1 5.2676 1.6556 -8.7150 22 6 3.5638 1.8701 -9.9970 23 7 2.3145 1.4944 -10.1722 24 14 4.4948 2.6957 -11.3902 25 1 5.2779 1.6768 -12.1344 26 1 3.5304 3.3488 -12.3114 27 1 5.4163 3.7179 -10.8323 28 6 2.0400 -0.7212 1.2492 29 6 1.0326 -1.5532 2.0454 30 6 1.5400 -0.2225 2.6065 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.9702 1.4237 0.0004 35 1 1.6766 -1.7488 -1.2492 36 1 3.1299 -0.7216 -1.2490 37 1 2.4213 -1.2597 -3.7928 38 1 1.7375 1.2473 -4.8999 39 1 0.2848 0.2186 -4.9001 40 1 1.6285 -0.3624 -8.2861 41 1 0.2700 0.2927 -7.3367 42 1 1.7977 3.3539 -6.1789 43 1 0.9472 1.8981 -5.5765 44 1 2.8633 1.2573 -4.4233 45 1 3.7091 2.7142 -5.0295 46 1 3.7921 -0.8875 -5.2170 47 1 3.7851 -1.0868 -6.9868 48 1 1.8775 1.6458 -11.0247 49 1 3.0646 -1.0887 1.1944 50 1 0.0066 -1.5871 1.6789 51 1 1.3947 -2.4680 2.5146 52 1 2.2356 -0.2623 3.4448 53 1 0.8474 0.6192 2.6094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501164037.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:19 Heat of formation + Delta-G solvation = 38.998206 kcal Electronic energy + Delta-G solvation = -31392.686028 eV Core-core repulsion = 27461.870910 eV Total energy + Delta-G solvation = -3930.815118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.64855 -40.86372 -39.17300 -36.37673 -36.00426 -34.46164 -32.97470 -32.58461 -32.22544 -31.37854 -29.25314 -27.78522 -25.52726 -24.86751 -24.53793 -23.19279 -22.13660 -21.66143 -20.88210 -20.50260 -20.35397 -18.71461 -18.25823 -17.62814 -17.17454 -16.97371 -16.54074 -16.35464 -15.99490 -15.62262 -15.21639 -14.79162 -14.59163 -14.49367 -14.23719 -14.18191 -13.87705 -13.64560 -13.40963 -13.24724 -13.16135 -13.03321 -12.85581 -12.70241 -12.67859 -12.52258 -12.47602 -12.29074 -12.03865 -11.97813 -11.73459 -11.36744 -11.34205 -11.20599 -11.03958 -11.03094 -10.90768 -10.84226 -10.74898 -10.48747 -10.26405 -9.37586 -8.76678 -7.84999 -5.10133 1.45859 1.48999 1.56732 1.89076 2.38188 2.52679 2.86789 3.31880 3.59106 3.61089 3.67012 3.77867 3.94398 3.98823 4.03417 4.05969 4.14469 4.22878 4.25642 4.31506 4.39624 4.41401 4.45459 4.56588 4.63974 4.68010 4.73395 4.81769 4.82854 4.89696 4.92197 4.99071 5.02106 5.05925 5.09026 5.09919 5.12528 5.21246 5.30111 5.32795 5.34943 5.39162 5.48863 5.54645 5.56015 5.60422 5.73196 5.80033 5.88746 6.26380 6.79800 7.03600 7.10353 7.53291 7.79753 8.60537 9.27752 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.033051 B = 0.002490 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.984321 B =11241.467523 C =11359.706761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.179 3.821 3 O -0.564 6.564 4 C -0.160 4.160 5 C 0.503 3.497 6 O -0.563 6.563 7 N -0.717 5.717 8 C 0.017 3.983 9 C -0.074 4.074 10 H 0.068 0.932 11 C -0.103 4.103 12 C 0.176 3.824 13 H 0.059 0.941 14 C -0.162 4.162 15 C -0.145 4.145 16 C 0.142 3.858 17 H 0.066 0.934 18 C -0.114 4.114 19 N -0.605 5.605 20 C -0.233 4.233 21 H 0.075 0.925 22 C -0.058 4.058 23 N -0.930 5.930 24 Si 0.961 3.039 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.277 1.277 28 C -0.184 4.184 29 C -0.173 4.173 30 C -0.175 4.175 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.381 0.619 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.406 0.594 38 H 0.180 0.820 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.038 0.962 48 H 0.245 0.755 49 H 0.124 0.876 50 H 0.099 0.901 51 H 0.108 0.892 52 H 0.103 0.897 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -9.449 24.147 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.138 3.862 3 O -0.370 6.370 4 C -0.200 4.200 5 C 0.291 3.709 6 O -0.442 6.442 7 N -0.370 5.370 8 C -0.103 4.103 9 C -0.093 4.093 10 H 0.087 0.913 11 C -0.143 4.143 12 C 0.069 3.931 13 H 0.077 0.923 14 C -0.200 4.200 15 C -0.183 4.183 16 C 0.035 3.965 17 H 0.084 0.916 18 C -0.153 4.153 19 N -0.327 5.327 20 C -0.362 4.362 21 H 0.093 0.907 22 C -0.253 4.253 23 N -0.578 5.578 24 Si 0.791 3.209 25 H -0.213 1.213 26 H -0.224 1.224 27 H -0.203 1.203 28 C -0.203 4.203 29 C -0.210 4.210 30 C -0.212 4.212 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.229 0.771 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.243 0.757 38 H 0.195 0.805 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.121 0.879 44 H 0.137 0.863 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.142 0.858 50 H 0.117 0.883 51 H 0.127 0.873 52 H 0.122 0.878 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.890 -8.582 23.948 25.455 hybrid contribution 0.907 -0.087 -1.693 1.923 sum 0.017 -8.669 22.255 23.883 Atomic orbital electron populations 1.22092 0.94030 1.02312 1.02817 1.20298 0.94064 0.81321 0.90482 1.86696 1.27080 1.26352 1.96884 1.22444 1.04399 1.01800 0.91372 1.21029 0.80115 0.84585 0.85179 1.90684 1.38927 1.27723 1.86855 1.46239 1.53308 1.32184 1.05300 1.24703 0.98016 1.04392 0.83184 1.21112 0.95938 0.98692 0.93545 0.91347 1.21823 0.97774 0.98269 0.96415 1.21320 0.84814 0.93830 0.93147 0.92326 1.23730 0.98742 0.99774 0.97728 1.23560 0.95663 1.00018 0.99082 1.21749 0.96697 0.92662 0.85376 0.91572 1.22067 0.94869 0.97649 1.00728 1.45393 1.03922 1.76414 1.06974 1.19221 0.90177 1.40904 0.85868 0.90733 1.25397 0.97646 1.03158 0.99057 1.70138 1.13450 1.50178 1.24038 0.85367 0.77437 0.78714 0.79409 1.21333 1.22391 1.20300 1.23007 1.00405 1.04605 0.92236 1.23201 0.99417 0.95283 1.03095 1.22891 1.03984 0.97945 0.96334 0.90089 0.92994 0.91977 0.77109 0.86018 0.85976 0.75722 0.80505 0.94398 0.94273 0.93536 0.93586 0.87891 0.86328 0.92866 0.89708 0.94287 0.94581 0.85797 0.88294 0.87326 0.87819 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 7.18 71.98 0.52 -2.68 16 2 C 0.18 3.02 0.80 -10.79 -0.01 3.01 16 3 O -0.56 -12.21 11.85 -131.53 -1.56 -13.77 16 4 C -0.16 -2.21 4.95 29.85 0.15 -2.06 16 5 C 0.50 11.52 7.15 87.66 0.63 12.15 16 6 O -0.56 -18.14 12.96 14.45 0.19 -17.96 16 7 N -0.72 -15.48 4.39 -463.07 -2.03 -17.51 16 8 C 0.02 0.50 2.66 86.38 0.23 0.73 16 9 C -0.07 -2.36 2.76 -10.70 -0.03 -2.39 16 10 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 11 C -0.10 -4.29 5.33 30.88 0.16 -4.13 16 12 C 0.18 8.14 3.16 45.43 0.14 8.28 16 13 H 0.06 3.22 6.47 -2.39 -0.02 3.21 16 14 C -0.16 -6.17 5.75 32.14 0.18 -5.99 16 15 C -0.15 -4.91 5.79 32.14 0.19 -4.72 16 16 C 0.14 5.38 4.28 45.43 0.19 5.57 16 17 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 18 C -0.11 -3.65 5.27 30.88 0.16 -3.49 16 19 N -0.61 -29.47 2.82 -637.20 -1.80 -31.27 16 20 C -0.23 -12.72 10.33 84.03 0.87 -11.86 16 21 H 0.07 3.96 7.90 -2.91 -0.02 3.94 16 22 C -0.06 -3.25 5.30 84.86 0.45 -2.80 16 23 N -0.93 -54.48 11.01 21.65 0.24 -54.24 16 24 Si 0.96 45.56 29.60 68.60 2.03 47.59 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 28 C -0.18 -2.17 5.32 -10.80 -0.06 -2.22 16 29 C -0.17 -1.86 9.66 30.62 0.30 -1.56 16 30 C -0.17 -2.24 9.86 30.62 0.30 -1.94 16 31 H 0.08 1.29 6.73 -2.39 -0.02 1.28 16 32 H 0.05 1.08 6.96 -2.39 -0.02 1.07 16 33 H 0.06 1.73 5.51 -2.39 -0.01 1.71 16 34 H 0.38 5.40 9.04 -74.06 -0.67 4.73 16 35 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.41 6.45 7.37 -92.70 -0.68 5.76 16 38 H 0.18 5.66 1.12 -108.72 -0.12 5.54 16 39 H 0.04 1.20 7.98 -2.39 -0.02 1.18 16 40 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.10 3.64 4.83 -2.39 -0.01 3.63 16 44 H 0.12 3.48 4.04 -2.39 -0.01 3.47 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.08 1.99 6.76 -2.38 -0.02 1.97 16 47 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 49 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.10 1.13 5.89 -2.39 -0.01 1.12 16 51 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.08 1.33 7.28 -2.39 -0.02 1.31 16 Total: -1.00 -71.05 383.34 0.91 -70.14 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.53 Total: 33.12 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 4.38 Total: -16.09 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -3.59 Total: -103.02 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.37 Total: -31.73 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -71.05 0.91 -70.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501164037.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.137 kcal (2) G-P(sol) polarization free energy of solvation -71.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds