Wall clock time and date at job start Tue Mar 31 2020 20:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 119.99840 * 2 1 4 4 C 1.52997 * 109.47435 * 124.99729 * 3 2 1 5 5 O 1.42896 * 109.47331 * 179.97438 * 4 3 2 6 6 C 1.42901 * 114.00054 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47296 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00161 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00357 * 179.97438 * 7 6 5 10 10 C 1.46931 * 120.62714 * 0.02763 * 9 7 6 11 11 C 1.53194 * 108.77629 * 126.36558 * 10 9 7 12 12 C 1.53039 * 109.31026 * 54.63121 * 11 10 9 13 13 C 1.53037 * 109.54101 * 298.63204 * 12 11 10 14 14 H 1.08999 * 109.50017 * 301.41283 * 13 12 11 15 15 C 1.53001 * 109.49926 * 181.31935 * 13 12 11 16 16 H 1.09001 * 110.64179 * 300.86405 * 15 13 12 17 17 C 1.55152 * 110.72029 * 177.72405 * 15 13 12 18 18 C 1.54912 * 101.57984 * 206.13264 * 17 15 13 19 19 N 1.47421 * 104.83366 * 37.01007 * 18 17 15 20 20 C 1.36938 * 125.65294 * 155.90738 * 19 18 17 21 21 H 1.07998 * 119.99955 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99582 * 359.97438 * 20 19 18 23 23 N 1.31618 * 120.00286 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99709 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47021 * 60.00162 * 24 22 20 26 26 H 1.48500 * 109.46881 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47082 * 300.00349 * 24 22 20 28 28 C 1.47324 * 108.73582 * 335.71550 * 19 18 17 29 29 C 1.46922 * 120.63238 * 179.97438 * 9 7 6 30 30 H 1.08008 * 120.00174 * 180.02562 * 1 2 3 31 31 H 1.07991 * 120.00370 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.99903 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47475 * 4.99801 * 3 2 1 34 34 H 1.09001 * 109.46860 * 244.99891 * 3 2 1 35 35 H 1.09008 * 109.46941 * 59.99899 * 4 3 2 36 36 H 1.09001 * 109.47230 * 299.99936 * 4 3 2 37 37 H 1.08999 * 109.47385 * 60.00177 * 6 5 4 38 38 H 1.09004 * 109.46834 * 300.00242 * 6 5 4 39 39 H 1.09000 * 109.57916 * 246.14924 * 10 9 7 40 40 H 1.08997 * 109.58813 * 6.57526 * 10 9 7 41 41 H 1.09000 * 109.49137 * 174.58300 * 11 10 9 42 42 H 1.08993 * 109.49811 * 294.64709 * 11 10 9 43 43 H 1.09000 * 109.46006 * 178.60912 * 12 11 10 44 44 H 1.09006 * 109.46060 * 58.65927 * 12 11 10 45 45 H 1.09001 * 111.00681 * 324.20745 * 17 15 13 46 46 H 1.09001 * 111.00613 * 88.02315 * 17 15 13 47 47 H 1.09003 * 110.36524 * 155.84832 * 18 17 15 48 48 H 1.08998 * 110.36942 * 278.16958 * 18 17 15 49 49 H 0.96995 * 119.99943 * 180.02562 * 23 22 20 50 50 H 1.08999 * 110.06387 * 241.87603 * 28 19 18 51 51 H 1.08994 * 109.85207 * 120.60931 * 28 19 18 52 52 H 1.08999 * 109.58543 * 113.84583 * 29 9 7 53 53 H 1.09003 * 109.70593 * 353.48777 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 8 3.7498 2.5705 1.1813 6 6 4.6893 2.6993 2.2503 7 6 5.3813 4.0344 2.1528 8 8 5.0982 4.8002 1.2559 9 7 6.3148 4.3777 3.0624 10 6 6.6689 3.4605 4.1543 11 6 8.1859 3.2472 4.1466 12 6 8.8882 4.6053 4.2137 13 6 8.5113 5.4377 2.9860 14 1 8.7987 4.9022 2.0812 15 6 9.2397 6.7822 3.0374 16 1 8.9757 7.3279 3.9434 17 6 8.9220 7.6272 1.7755 18 6 10.1811 8.5242 1.6769 19 7 11.2972 7.6549 2.0913 20 6 12.6108 7.8213 1.7419 21 1 13.3567 7.1269 2.0992 22 6 12.9834 8.8826 0.9284 23 7 12.0744 9.7292 0.4934 24 14 14.7754 9.1101 0.4523 25 1 15.2480 7.9103 -0.2842 26 1 14.9088 10.3076 -0.4157 27 1 15.5938 9.2927 1.6778 28 6 10.7669 6.5797 2.9475 29 6 6.9984 5.6756 2.9802 30 1 -0.5401 -0.9354 0.0004 31 1 -0.5400 0.9352 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6212 1.4025 -0.9314 35 1 3.7399 0.5066 1.0921 36 1 2.4771 1.2357 2.1130 37 1 5.4283 1.9009 2.1828 38 1 4.1661 2.6303 3.2040 39 1 6.3655 3.8931 5.1076 40 1 6.1649 2.5053 4.0071 41 1 8.4730 2.6461 5.0093 42 1 8.4762 2.7318 3.2312 43 1 9.9677 4.4553 4.2333 44 1 8.5784 5.1302 5.1174 45 1 8.8243 6.9926 0.8947 46 1 8.0244 8.2277 1.9232 47 1 10.3254 8.8639 0.6512 48 1 10.0936 9.3764 2.3508 49 1 12.3348 10.4705 -0.0753 50 1 11.2083 6.6418 3.9422 51 1 10.9866 5.6095 2.5021 52 1 6.7219 6.2891 3.8377 53 1 6.7122 6.1841 2.0595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570552242.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:08 Heat of formation + Delta-G solvation = -64.804137 kcal Electronic energy + Delta-G solvation = -29322.630958 eV Core-core repulsion = 25387.314633 eV Total energy + Delta-G solvation = -3935.316325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.40452 -39.83885 -38.81994 -37.88984 -35.88486 -35.23507 -33.66299 -32.56762 -31.02017 -30.58486 -29.34568 -28.06802 -26.62129 -25.71197 -24.00283 -23.80167 -22.33765 -21.70104 -20.79186 -20.70535 -19.96823 -18.87453 -18.40908 -17.67367 -17.40726 -16.94495 -16.65530 -16.50838 -16.09829 -15.75141 -15.56522 -15.35408 -15.14514 -14.79727 -14.52933 -14.27148 -14.14484 -13.99297 -13.87820 -13.63415 -13.41766 -13.33646 -13.26662 -12.87815 -12.69441 -12.55165 -12.41327 -12.14972 -12.10816 -12.05560 -12.00398 -11.96920 -11.78483 -11.67506 -11.37826 -11.35755 -11.00253 -10.76237 -10.69821 -10.68866 -10.26223 -9.64289 -8.88475 -7.77247 -5.22023 1.33655 1.44361 1.48477 1.53654 1.54957 1.74282 2.49284 2.85067 3.31582 3.50867 3.65668 3.72387 3.78402 3.92652 4.00560 4.09025 4.10625 4.17926 4.18893 4.22883 4.28405 4.30453 4.37998 4.43100 4.46306 4.49831 4.57513 4.63312 4.70256 4.80432 4.85551 4.89925 4.90659 4.91812 4.98920 5.03535 5.07720 5.10458 5.17291 5.19247 5.36608 5.40795 5.45937 5.53570 5.55150 5.64847 5.73396 5.81512 5.86114 6.09703 6.30421 6.41477 7.10075 7.14234 7.78773 8.43685 9.24614 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.001951 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.753039 B =14346.035301 C =15031.864781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C -0.097 4.097 4 C 0.064 3.936 5 O -0.404 6.404 6 C 0.051 3.949 7 C 0.502 3.498 8 O -0.581 6.581 9 N -0.606 5.606 10 C 0.100 3.900 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.074 4.074 14 H 0.050 0.950 15 C -0.076 4.076 16 H 0.086 0.914 17 C -0.126 4.126 18 C 0.154 3.846 19 N -0.629 5.629 20 C -0.241 4.241 21 H 0.082 0.918 22 C -0.071 4.071 23 N -0.951 5.951 24 Si 0.983 3.017 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.276 1.276 28 C 0.142 3.858 29 C 0.122 3.878 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.076 0.924 47 H 0.066 0.934 48 H -0.012 1.012 49 H 0.246 0.754 50 H 0.026 0.974 51 H 0.022 0.978 52 H 0.084 0.916 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.397 -23.561 10.723 32.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.177 4.177 3 C -0.134 4.134 4 C -0.012 4.012 5 O -0.323 6.323 6 C -0.028 4.028 7 C 0.291 3.709 8 O -0.461 6.461 9 N -0.340 5.340 10 C -0.021 4.021 11 C -0.168 4.168 12 C -0.153 4.153 13 C -0.094 4.094 14 H 0.069 0.931 15 C -0.096 4.096 16 H 0.105 0.895 17 C -0.165 4.165 18 C 0.029 3.971 19 N -0.356 5.356 20 C -0.370 4.370 21 H 0.100 0.900 22 C -0.264 4.264 23 N -0.601 5.601 24 Si 0.810 3.190 25 H -0.203 1.203 26 H -0.220 1.220 27 H -0.202 1.202 28 C 0.017 3.983 29 C -0.001 4.001 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.143 0.857 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.006 0.994 49 H 0.056 0.944 50 H 0.044 0.956 51 H 0.040 0.960 52 H 0.102 0.898 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.459 -22.910 10.017 32.308 hybrid contribution 1.258 0.777 -0.637 1.610 sum -19.202 -22.133 9.381 30.766 Atomic orbital electron populations 1.24084 0.95932 1.02717 0.99788 1.22817 0.96142 0.97637 1.01057 1.20651 0.97878 0.96519 0.98342 1.22655 0.94216 0.85184 0.99147 1.87973 1.55126 1.39456 1.49742 1.22364 0.93538 0.94075 0.92788 1.21059 0.79784 0.89141 0.80879 1.90720 1.65144 1.54446 1.35763 1.48191 1.38365 1.18822 1.28633 1.22173 0.96242 0.94042 0.89639 1.21922 0.94346 0.96874 1.03647 1.21606 1.00814 0.95983 0.96859 1.21326 0.93685 0.94858 0.99550 0.93100 1.22052 0.93713 0.95750 0.98039 0.89524 1.22872 0.97819 0.98346 0.97470 1.21680 0.85044 0.90645 0.99755 1.44924 1.03812 1.29732 1.57098 1.19462 0.84156 1.08881 1.24494 0.90049 1.25700 1.02272 0.97567 1.00822 1.70084 1.32786 1.17421 1.39807 0.85089 0.79168 0.76919 0.77784 1.20295 1.21982 1.20152 1.21501 0.93029 0.90737 0.92984 1.21513 0.91055 0.84722 1.02791 0.86805 0.88704 0.85694 0.91692 0.91147 0.91192 0.91322 0.87418 0.86858 0.88770 0.86954 0.87552 0.92405 0.91928 0.90170 0.93355 0.90511 0.91552 0.99438 0.94426 0.95598 0.95951 0.89772 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 14.32 67.78 0.97 -0.87 16 2 C -0.16 -1.68 9.52 25.64 0.24 -1.43 16 3 C -0.10 -1.41 6.03 29.85 0.18 -1.23 16 4 C 0.06 0.85 5.92 71.98 0.43 1.28 16 5 O -0.40 -8.88 9.88 -129.94 -1.28 -10.16 16 6 C 0.05 0.81 4.76 71.23 0.34 1.15 16 7 C 0.50 12.79 7.78 87.66 0.68 13.47 16 8 O -0.58 -21.87 15.92 15.99 0.25 -21.62 16 9 N -0.61 -12.49 2.97 -818.97 -2.43 -14.92 16 10 C 0.10 1.04 6.34 86.36 0.55 1.59 16 11 C -0.13 -1.61 6.08 30.67 0.19 -1.42 16 12 C -0.12 -2.18 5.01 30.62 0.15 -2.03 16 13 C -0.07 -1.98 1.72 -10.73 -0.02 -2.00 16 14 H 0.05 1.60 8.12 -2.39 -0.02 1.58 16 15 C -0.08 -2.57 2.48 -9.61 -0.02 -2.59 16 16 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 17 C -0.13 -5.14 5.60 31.99 0.18 -4.96 16 18 C 0.15 8.11 5.89 86.86 0.51 8.62 16 19 N -0.63 -34.01 3.40 -691.23 -2.35 -36.37 16 20 C -0.24 -14.05 10.28 84.03 0.86 -13.19 16 21 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 22 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 23 N -0.95 -59.23 10.09 21.65 0.22 -59.01 16 24 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 28 C 0.14 5.95 5.91 86.67 0.51 6.46 16 29 C 0.12 3.09 5.41 86.35 0.47 3.56 16 30 H 0.11 0.76 8.06 -2.91 -0.02 0.74 16 31 H 0.09 0.97 7.84 -2.92 -0.02 0.94 16 32 H 0.13 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.06 1.07 7.79 -2.39 -0.02 1.05 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.11 1.05 7.69 -2.39 -0.02 1.04 16 38 H 0.11 0.96 7.94 -2.38 -0.02 0.94 16 39 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 40 H 0.11 0.47 5.93 -2.39 -0.01 0.46 16 41 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 1.33 7.28 -2.39 -0.02 1.32 16 44 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.05 2.06 8.05 -2.39 -0.02 2.04 16 46 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 47 H 0.07 4.01 5.88 -2.39 -0.01 3.99 16 48 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 49 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 50 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.02 0.93 7.68 -2.39 -0.02 0.92 16 52 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 53 H 0.06 2.06 6.43 -2.39 -0.02 2.04 16 Total: -1.00 -81.58 412.27 3.97 -77.61 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.85 Total: 12.71 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 6.69 Total: 2.66 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -4.57 Total: -110.30 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.03 Total: -31.78 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -81.58 3.97 -77.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570552242.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.806 kcal (2) G-P(sol) polarization free energy of solvation -81.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds