Wall clock time and date at job start Tue Mar 31 2020 19:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47295 * 2 1 4 4 C 1.53003 * 109.47207 * 119.99614 * 2 1 3 5 5 H 1.09004 * 109.47317 * 184.99976 * 4 2 1 6 6 C 1.52996 * 109.47335 * 305.00097 * 4 2 1 7 7 C 1.52999 * 109.47420 * 184.99860 * 6 4 2 8 8 N 1.46499 * 109.47220 * 180.02562 * 7 6 4 9 9 C 1.46493 * 120.00155 * 270.00150 * 8 7 6 10 10 C 1.34774 * 119.99973 * 89.99999 * 8 7 6 11 11 O 1.21282 * 120.00357 * 359.97438 * 10 8 7 12 12 C 1.50699 * 120.00195 * 180.02562 * 10 8 7 13 13 H 1.09005 * 110.81161 * 56.67825 * 12 10 8 14 14 C 1.58919 * 110.16444 * 291.26652 * 12 10 8 15 15 C 1.55818 * 103.76580 * 240.91207 * 14 12 10 16 16 H 1.08994 * 115.93729 * 160.95608 * 15 14 12 17 17 O 1.47959 * 99.54581 * 33.57216 * 15 14 12 18 18 C 1.46531 * 100.62940 * 305.06836 * 17 15 14 19 19 H 1.08998 * 115.68870 * 180.87711 * 18 17 15 20 20 C 1.55824 * 101.24517 * 306.37211 * 18 17 15 21 21 H 1.08996 * 118.71875 * 172.20678 * 20 18 17 22 22 C 1.53006 * 117.23459 * 330.28055 * 20 18 17 23 23 C 1.53002 * 60.75612 * 89.17341 * 22 20 18 24 24 H 1.09001 * 120.22389 * 113.10444 * 23 22 20 25 25 N 1.46505 * 109.47047 * 64.99945 * 4 2 1 26 26 C 1.36941 * 119.99576 * 84.99977 * 25 4 2 27 27 H 1.07998 * 120.00171 * 359.97438 * 26 25 4 28 28 C 1.38809 * 119.99430 * 180.02562 * 26 25 4 29 29 N 1.31618 * 120.00292 * 0.02562 * 28 26 25 30 30 Si 1.86806 * 119.99857 * 180.02562 * 28 26 25 31 31 H 1.48497 * 109.47009 * 89.99825 * 30 28 26 32 32 H 1.48499 * 109.47122 * 210.00197 * 30 28 26 33 33 H 1.48506 * 109.46906 * 329.99808 * 30 28 26 34 34 H 1.08999 * 109.47071 * 300.00584 * 1 2 3 35 35 H 1.09000 * 109.47093 * 60.00013 * 1 2 3 36 36 H 1.09001 * 109.47126 * 180.02562 * 1 2 3 37 37 H 1.09003 * 109.47526 * 240.00011 * 2 1 3 38 38 H 1.09008 * 109.46823 * 300.00087 * 3 2 1 39 39 H 1.08999 * 109.47538 * 59.99702 * 3 2 1 40 40 H 1.09000 * 109.47406 * 179.97438 * 3 2 1 41 41 H 1.09007 * 109.47183 * 64.99399 * 6 4 2 42 42 H 1.09004 * 109.47243 * 305.00205 * 6 4 2 43 43 H 1.08997 * 109.46899 * 60.00237 * 7 6 4 44 44 H 1.09004 * 109.46741 * 299.99752 * 7 6 4 45 45 H 1.09007 * 109.47081 * 269.99999 * 9 8 7 46 46 H 1.09005 * 109.47253 * 29.99578 * 9 8 7 47 47 H 1.09006 * 109.47823 * 149.99995 * 9 8 7 48 48 H 1.09002 * 108.12294 * 123.26235 * 14 12 10 49 49 H 1.09005 * 112.57538 * 0.70045 * 14 12 10 50 50 H 1.09002 * 117.41335 * 341.47415 * 22 20 18 51 51 H 1.08998 * 117.40472 * 196.87106 * 22 20 18 52 52 H 0.96991 * 119.99812 * 265.00811 * 25 4 2 53 53 H 0.97001 * 120.00111 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.4299 -0.0762 2.4953 7 6 2.0343 -0.7141 3.7478 8 7 1.4497 -0.0969 4.9409 9 6 2.0784 1.0841 5.5374 10 6 0.3334 -0.6157 5.4897 11 8 -0.1875 -1.5932 4.9956 12 6 -0.2683 0.0196 6.7166 13 1 -0.4935 1.0710 6.5375 14 6 0.6843 -0.1989 7.9698 15 6 -0.1943 -1.0135 8.9659 16 1 0.3435 -1.5478 9.7490 17 8 -0.9814 -1.8132 8.0015 18 6 -1.5465 -0.7500 7.1663 19 1 -2.2011 -1.0802 6.3598 20 6 -2.2165 0.1573 8.2415 21 1 -2.6231 1.1208 7.9342 22 6 -2.7266 -0.5238 9.5132 23 6 -1.2838 -0.0169 9.4640 24 1 -0.9716 0.8123 10.0989 25 7 1.6524 -2.1328 1.1907 26 6 2.4346 -3.0300 0.5136 27 1 3.3369 -2.6969 0.0224 28 6 2.0670 -4.3674 0.4576 29 7 0.9666 -4.7730 1.0549 30 14 3.1344 -5.5915 -0.4654 31 1 4.1441 -6.1645 0.4604 32 1 2.2831 -6.6817 -1.0058 33 1 3.8243 -4.9012 -1.5847 34 1 -0.3633 0.5139 0.8899 35 1 -0.3633 0.5138 -0.8900 36 1 -0.3633 -1.0277 0.0005 37 1 1.8933 -0.5138 -0.8900 38 1 1.6766 1.9563 -0.8901 39 1 1.6767 1.9564 0.8899 40 1 3.1300 1.4425 0.0005 41 1 0.3509 -0.2308 2.4933 42 1 1.6436 0.9927 2.4928 43 1 3.1132 -0.5593 3.7498 44 1 1.8204 -1.7830 3.7503 45 1 2.8100 0.7694 6.2817 46 1 2.5773 1.6622 4.7594 47 1 1.3160 1.6997 6.0149 48 1 0.9308 0.7793 8.3829 49 1 1.5906 -0.7486 7.7156 50 1 -2.8811 -1.6022 9.4774 51 1 -3.4326 0.0312 10.1309 52 1 0.8417 -2.4318 1.6314 53 1 0.7096 -5.7075 1.0155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675129896.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:46 Heat of formation + Delta-G solvation = -42.123507 kcal Electronic energy + Delta-G solvation = -30846.393753 eV Core-core repulsion = 26912.060934 eV Total energy + Delta-G solvation = -3934.332819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.44166 -40.51227 -38.91938 -36.59014 -35.20837 -35.06530 -33.43026 -32.43331 -31.11160 -30.43728 -27.95370 -27.73451 -26.93908 -25.45367 -24.51893 -23.76849 -22.87570 -21.37713 -20.90384 -19.93470 -19.83253 -19.21560 -18.22129 -17.80282 -17.25991 -16.81300 -16.73258 -16.36445 -15.66438 -15.57701 -15.34992 -15.20891 -14.89522 -14.68099 -14.34615 -14.21094 -13.92749 -13.65209 -13.60343 -13.38836 -13.18552 -12.94072 -12.87681 -12.86867 -12.79749 -12.67859 -12.47878 -12.45685 -12.22043 -12.17848 -12.07744 -12.02154 -11.81667 -11.68546 -11.37602 -11.22053 -11.13491 -10.97666 -10.85678 -10.63905 -10.56345 -9.58849 -8.91336 -7.88558 -5.16565 1.43364 1.46015 1.54121 1.68172 2.03080 2.57407 2.64901 2.72790 3.38988 3.43265 3.50294 3.53482 3.78734 3.84213 3.92148 3.97512 4.05801 4.11123 4.12795 4.22383 4.28451 4.32967 4.41496 4.45489 4.54254 4.58491 4.60010 4.67744 4.71564 4.77443 4.81959 4.85577 4.88745 4.88780 4.90698 4.96055 4.97923 5.01191 5.12549 5.14632 5.19519 5.30544 5.33104 5.36575 5.41806 5.51801 5.57253 5.63519 5.64924 5.71650 6.31752 6.49587 7.29524 7.36810 8.17489 8.38879 9.34782 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012736 B = 0.003088 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.040309 B = 9065.345925 C =10234.201157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 C -0.133 4.133 4 C 0.179 3.821 5 H 0.047 0.953 6 C -0.116 4.116 7 C 0.125 3.875 8 N -0.612 5.612 9 C 0.069 3.931 10 C 0.503 3.497 11 O -0.587 6.587 12 C -0.120 4.120 13 H 0.146 0.854 14 C -0.117 4.117 15 C 0.074 3.926 16 H 0.150 0.850 17 O -0.413 6.413 18 C 0.099 3.901 19 H 0.101 0.899 20 C -0.193 4.193 21 H 0.148 0.852 22 C -0.145 4.145 23 C -0.174 4.174 24 H 0.157 0.843 25 N -0.731 5.731 26 C -0.228 4.228 27 H 0.077 0.923 28 C -0.082 4.082 29 N -0.972 5.972 30 Si 0.968 3.032 31 H -0.289 1.289 32 H -0.301 1.301 33 H -0.266 1.266 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.019 0.981 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.039 0.961 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.126 0.874 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.127 0.873 52 H 0.367 0.633 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 23.210 18.611 29.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.132 4.132 3 C -0.191 4.191 4 C 0.070 3.930 5 H 0.065 0.935 6 C -0.155 4.155 7 C 0.002 3.998 8 N -0.344 5.344 9 C -0.072 4.072 10 C 0.292 3.708 11 O -0.466 6.466 12 C -0.141 4.141 13 H 0.164 0.836 14 C -0.154 4.154 15 C 0.018 3.982 16 H 0.167 0.833 17 O -0.333 6.333 18 C 0.041 3.959 19 H 0.119 0.881 20 C -0.211 4.211 21 H 0.166 0.834 22 C -0.182 4.182 23 C -0.191 4.191 24 H 0.174 0.826 25 N -0.370 5.370 26 C -0.360 4.360 27 H 0.095 0.905 28 C -0.274 4.274 29 N -0.624 5.624 30 Si 0.798 3.202 31 H -0.217 1.217 32 H -0.228 1.228 33 H -0.191 1.191 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.055 0.945 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.144 0.856 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.145 0.855 52 H 0.199 0.801 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.247 22.414 18.229 28.892 hybrid contribution -0.112 -1.812 -0.932 2.041 sum -0.359 20.602 17.297 26.903 Atomic orbital electron populations 1.21650 0.96206 0.99799 1.01021 1.21661 0.95691 0.96898 0.98953 1.21784 1.00959 0.94131 1.02222 1.20464 0.96675 0.83149 0.92666 0.93466 1.22046 0.99417 1.00571 0.93461 1.21267 0.97500 0.96974 0.84106 1.48001 1.26772 1.31190 1.28455 1.22178 0.99308 0.86035 0.99686 1.21234 0.80634 0.83481 0.85412 1.90800 1.62402 1.28754 1.64674 1.23662 0.96091 1.02032 0.92274 0.83637 1.23764 0.96636 1.02877 0.92159 1.24865 0.91746 0.90084 0.91537 0.83250 1.90298 1.66981 1.30616 1.45432 1.23939 0.93301 0.85782 0.92880 0.88122 1.24224 1.05428 1.02151 0.89286 0.83392 1.22907 0.96206 1.00735 0.98307 1.24319 0.90392 1.02705 1.01732 0.82553 1.42678 1.27779 1.03586 1.62935 1.19613 1.03300 0.89211 1.23880 0.90493 1.25553 0.99329 0.99304 1.03219 1.69892 1.26791 1.15079 1.50598 0.85202 0.77646 0.78895 0.78438 1.21682 1.22798 1.19100 0.92483 0.92534 0.96181 0.94171 0.92367 0.91334 0.92322 0.94201 0.88367 0.89355 0.94476 0.91249 0.89393 0.88506 0.85605 0.91308 0.90846 0.85521 0.80141 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 8.59 71.98 0.62 -4.05 16 2 C -0.11 -3.92 2.88 -10.79 -0.03 -3.95 16 3 C -0.13 -3.32 8.95 71.98 0.64 -2.68 16 4 C 0.18 7.10 2.06 44.99 0.09 7.19 16 5 H 0.05 1.85 8.08 -2.38 -0.02 1.83 16 6 C -0.12 -3.88 4.28 30.59 0.13 -3.75 16 7 C 0.12 4.30 5.29 86.38 0.46 4.76 16 8 N -0.61 -16.50 2.87 -846.76 -2.43 -18.94 16 9 C 0.07 0.94 9.46 127.77 1.21 2.15 16 10 C 0.50 16.34 6.94 87.66 0.61 16.95 16 11 O -0.59 -27.62 15.50 -3.03 -0.05 -27.67 16 12 C -0.12 -2.50 2.06 -8.43 -0.02 -2.52 16 13 H 0.15 1.90 7.16 -2.38 -0.02 1.89 16 14 C -0.12 -1.80 5.09 33.70 0.17 -1.63 16 15 C 0.07 1.35 5.85 32.55 0.19 1.54 16 16 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 17 O -0.41 -12.69 10.74 -148.98 -1.60 -14.29 16 18 C 0.10 2.57 4.49 32.55 0.15 2.72 16 19 H 0.10 3.24 7.80 -2.39 -0.02 3.22 16 20 C -0.19 -3.11 6.62 -9.22 -0.06 -3.17 16 21 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 22 C -0.14 -2.26 9.81 30.60 0.30 -1.96 16 23 C -0.17 -2.21 6.55 -9.22 -0.06 -2.27 16 24 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 25 N -0.73 -38.76 4.03 -322.93 -1.30 -40.06 16 26 C -0.23 -13.17 9.93 84.03 0.83 -12.34 16 27 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 28 C -0.08 -5.03 5.50 84.86 0.47 -4.57 16 29 N -0.97 -64.86 13.06 21.65 0.28 -64.57 16 30 Si 0.97 48.99 29.55 68.60 2.03 51.02 16 31 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 32 H -0.30 -15.49 7.11 99.48 0.71 -14.79 16 33 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 34 H 0.06 1.88 6.46 -2.39 -0.02 1.86 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.02 0.87 7.75 -2.39 -0.02 0.85 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.07 1.45 6.46 -2.39 -0.02 1.44 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.04 1.56 6.65 -2.38 -0.02 1.54 16 42 H 0.10 2.46 6.34 -2.39 -0.02 2.45 16 43 H 0.09 2.64 8.07 -2.39 -0.02 2.62 16 44 H 0.04 1.76 7.03 -2.38 -0.02 1.74 16 45 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.09 0.95 8.07 -2.38 -0.02 0.93 16 47 H 0.10 0.76 6.32 -2.38 -0.02 0.75 16 48 H 0.13 0.81 8.03 -2.39 -0.02 0.79 16 49 H 0.07 1.30 7.89 -2.38 -0.02 1.28 16 50 H 0.07 1.56 7.65 -2.39 -0.02 1.54 16 51 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.37 22.25 7.80 -92.72 -0.72 21.53 16 53 H 0.25 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -86.81 408.43 2.80 -84.02 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: 0.17 Total: 38.08 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 5.70 Total: -7.58 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -3.45 Total: -123.57 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -1.65 Total: -41.96 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Total: -86.81 2.80 -84.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675129896.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.893 kcal (2) G-P(sol) polarization free energy of solvation -86.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds