Wall clock time and date at job start Tue Mar 31 2020 20:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99577 * 2 1 4 4 C 1.53008 * 109.46851 * 112.63084 * 3 2 1 5 5 C 1.52998 * 109.47385 * 232.62954 * 3 2 1 6 6 C 1.52999 * 109.47148 * 300.00445 * 5 3 2 7 7 O 1.42900 * 109.46957 * 179.97438 * 6 5 3 8 8 C 1.42903 * 114.00122 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47265 * 352.63696 * 3 2 1 10 10 O 1.21277 * 120.00417 * 114.69383 * 9 3 2 11 11 N 1.34775 * 119.99717 * 294.68922 * 9 3 2 12 12 C 1.47192 * 125.65193 * 184.73435 * 11 9 3 13 13 C 1.55416 * 106.93201 * 178.80599 * 12 11 9 14 14 H 1.09001 * 112.44832 * 145.11845 * 13 12 11 15 15 C 1.53084 * 106.80943 * 268.54926 * 13 12 11 16 16 C 1.51503 * 111.61448 * 163.91478 * 15 13 12 17 17 N 1.47233 * 107.90949 * 302.67933 * 16 15 13 18 18 C 1.36935 * 121.38998 * 237.94803 * 17 16 15 19 19 H 1.08006 * 119.99977 * 31.88072 * 18 17 16 20 20 C 1.38817 * 120.00126 * 211.88130 * 18 17 16 21 21 N 1.31611 * 119.99866 * 12.06695 * 20 18 17 22 22 Si 1.86803 * 119.99971 * 192.07185 * 20 18 17 23 23 H 1.48501 * 109.47000 * 59.99952 * 22 20 18 24 24 H 1.48494 * 109.46835 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46982 * 299.99839 * 22 20 18 26 26 C 1.46700 * 117.21643 * 57.97631 * 17 16 15 27 27 C 1.50817 * 111.24796 * 307.84170 * 26 17 16 28 28 H 1.09000 * 109.22869 * 167.57490 * 27 26 17 29 29 C 1.47849 * 125.65249 * 4.69301 * 11 9 3 30 30 H 1.08001 * 119.99326 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.00670 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.00173 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47034 * 303.20065 * 4 3 2 34 34 H 1.09004 * 109.46673 * 63.19529 * 4 3 2 35 35 H 1.08998 * 109.47137 * 183.19646 * 4 3 2 36 36 H 1.09007 * 109.46868 * 60.00136 * 5 3 2 37 37 H 1.09000 * 109.47232 * 180.02562 * 5 3 2 38 38 H 1.08993 * 109.47160 * 299.99722 * 6 5 3 39 39 H 1.09000 * 109.47219 * 59.99790 * 6 5 3 40 40 H 1.08998 * 109.47115 * 180.02562 * 8 7 6 41 41 H 1.09002 * 109.46623 * 300.00058 * 8 7 6 42 42 H 1.09000 * 109.46983 * 59.99829 * 8 7 6 43 43 H 1.08992 * 109.96491 * 59.43319 * 12 11 9 44 44 H 1.08999 * 109.96765 * 298.17367 * 12 11 9 45 45 H 1.09005 * 109.18577 * 284.35525 * 15 13 12 46 46 H 1.09003 * 109.18867 * 43.60760 * 15 13 12 47 47 H 1.09001 * 110.00861 * 182.88943 * 16 15 13 48 48 H 1.08992 * 109.45465 * 62.15281 * 16 15 13 49 49 H 0.96996 * 120.00350 * 180.02562 * 21 20 18 50 50 H 1.09004 * 109.11966 * 187.39368 * 26 17 16 51 51 H 1.09000 * 109.12635 * 68.30206 * 26 17 16 52 52 H 1.09000 * 110.52487 * 38.05489 * 29 11 9 53 53 H 1.09000 * 110.52770 * 275.30868 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.7991 1.4693 1.3315 5 6 3.0767 1.3092 -1.1464 6 6 4.0607 0.1523 -0.9614 7 8 5.0067 0.1557 -2.0324 8 6 5.9761 -0.8914 -1.9551 9 6 1.0943 2.4447 -0.1821 10 8 0.9307 3.2501 0.7097 11 7 0.4092 2.5687 -1.3361 12 6 -0.4897 3.6809 -1.6849 13 6 -1.0210 3.4010 -3.1183 14 1 -2.0502 3.7336 -3.2531 15 6 -0.0596 4.0912 -4.0894 16 6 -0.2330 3.5793 -5.5047 17 7 -0.0241 2.1220 -5.4880 18 6 0.9409 1.5309 -6.2590 19 1 1.8563 2.0604 -6.4784 20 6 0.7425 0.2510 -6.7588 21 7 -0.4505 -0.3014 -6.6983 22 14 2.1690 -0.6870 -7.5169 23 1 3.2418 -0.8593 -6.5048 24 1 1.6988 -2.0203 -7.9712 25 1 2.7002 0.0727 -8.6770 26 6 -0.8932 1.3296 -4.6111 27 6 -0.8867 1.8690 -3.2027 28 1 -1.6963 1.4072 -2.6377 29 6 0.4368 1.6107 -2.4619 30 1 -0.5399 -0.9354 -0.0004 31 1 -0.5401 0.9352 0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 2.0837 1.4095 2.1517 34 1 3.5401 0.6768 1.4372 35 1 3.2977 2.4383 1.3541 36 1 2.5525 1.1922 -2.0950 37 1 3.6219 2.2530 -1.1461 38 1 4.5847 0.2692 -0.0129 39 1 3.5157 -0.7917 -0.9614 40 1 6.6571 -0.8193 -2.8031 41 1 6.5402 -0.7963 -1.0273 42 1 5.4705 -1.8568 -1.9756 43 1 0.0592 4.6223 -1.6685 44 1 -1.3212 3.7221 -0.9812 45 1 -0.2473 5.1649 -4.0768 46 1 0.9662 3.9040 -3.7716 47 1 0.4970 4.0497 -6.1635 48 1 -1.2418 3.8040 -5.8509 49 1 -0.5890 -1.1958 -7.0471 50 1 -0.5433 0.2973 -4.5998 51 1 -1.9115 1.3562 -4.9990 52 1 0.4736 0.5864 -2.0912 53 1 1.2859 1.8126 -3.1148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707220569.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:35 Heat of formation + Delta-G solvation = -46.419602 kcal Electronic energy + Delta-G solvation = -32285.475914 eV Core-core repulsion = 28350.956802 eV Total energy + Delta-G solvation = -3934.519112 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.11764 -40.11563 -38.93601 -37.18567 -36.89359 -34.35200 -32.85124 -32.31536 -32.14009 -29.96666 -29.09846 -27.34791 -27.22485 -26.21361 -24.80748 -23.41261 -22.96925 -22.82839 -21.50045 -20.04651 -19.37425 -18.66501 -17.92103 -17.62380 -17.13534 -16.95044 -16.72601 -16.35958 -15.98800 -15.70869 -15.42875 -15.24037 -15.06277 -14.82725 -14.61341 -14.51683 -14.26100 -13.93079 -13.69543 -13.58944 -13.39632 -13.21709 -13.11546 -12.86650 -12.77077 -12.71731 -12.56454 -12.49914 -12.30354 -12.25395 -12.05803 -12.02346 -11.82502 -11.65148 -11.62949 -11.03761 -11.00366 -10.76490 -10.54441 -10.51360 -10.23222 -9.64213 -8.54438 -7.82633 -5.31461 1.23212 1.48778 1.49307 1.50891 1.57131 1.95319 2.54123 2.81953 3.25291 3.35618 3.61937 3.65022 3.70054 3.73096 3.90611 4.00163 4.04483 4.16715 4.22619 4.28010 4.29796 4.42092 4.46971 4.53204 4.54257 4.55070 4.62941 4.70547 4.70865 4.79552 4.83420 4.85944 4.89094 4.89922 4.97566 5.01440 5.06219 5.12071 5.15778 5.18389 5.22935 5.28820 5.34384 5.41535 5.53827 5.59213 5.67086 5.69731 5.78031 6.26617 6.45604 6.48008 7.05401 7.22017 7.90109 8.47081 9.23395 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008891 B = 0.005570 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.424993 B = 5025.550318 C = 7086.568596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C -0.038 4.038 4 C -0.121 4.121 5 C -0.113 4.113 6 C 0.065 3.935 7 O -0.423 6.423 8 C 0.026 3.974 9 C 0.537 3.463 10 O -0.578 6.578 11 N -0.609 5.609 12 C 0.112 3.888 13 C -0.077 4.077 14 H 0.108 0.892 15 C -0.115 4.115 16 C 0.139 3.861 17 N -0.603 5.603 18 C -0.255 4.255 19 H 0.057 0.943 20 C -0.037 4.037 21 N -0.930 5.930 22 Si 0.954 3.046 23 H -0.278 1.278 24 H -0.293 1.293 25 H -0.280 1.280 26 C 0.195 3.805 27 C -0.109 4.109 28 H 0.077 0.923 29 C 0.118 3.882 30 H 0.124 0.876 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.043 0.957 47 H 0.051 0.949 48 H 0.021 0.979 49 H 0.250 0.750 50 H 0.055 0.945 51 H 0.001 0.999 52 H 0.086 0.914 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.254 -0.112 14.417 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.169 4.169 3 C -0.041 4.041 4 C -0.178 4.178 5 C -0.151 4.151 6 C -0.011 4.011 7 O -0.342 6.342 8 C -0.070 4.070 9 C 0.327 3.673 10 O -0.459 6.459 11 N -0.341 5.341 12 C -0.010 4.010 13 C -0.096 4.096 14 H 0.126 0.874 15 C -0.154 4.154 16 C 0.014 3.986 17 N -0.326 5.326 18 C -0.385 4.385 19 H 0.075 0.925 20 C -0.233 4.233 21 N -0.576 5.576 22 Si 0.783 3.217 23 H -0.204 1.204 24 H -0.219 1.219 25 H -0.206 1.206 26 C 0.069 3.931 27 C -0.130 4.130 28 H 0.096 0.904 29 C -0.003 4.003 30 H 0.142 0.858 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.040 0.960 49 H 0.059 0.941 50 H 0.073 0.927 51 H 0.019 0.981 52 H 0.104 0.896 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.175 0.300 14.731 15.617 hybrid contribution 0.450 -0.695 -0.757 1.122 sum 5.625 -0.395 13.974 15.069 Atomic orbital electron populations 1.24146 0.96281 1.02706 0.99068 1.22841 0.95804 0.96909 1.01332 1.19857 0.94129 0.91825 0.98267 1.21689 1.00086 1.02767 0.93282 1.21604 0.95978 0.99475 0.98007 1.22661 0.90209 0.98127 0.90128 1.87878 1.44199 1.53132 1.49033 1.22916 0.91396 0.89759 1.02957 1.20443 0.80390 0.86298 0.80153 1.90643 1.67638 1.45857 1.41758 1.48729 1.44862 1.24353 1.16115 1.22318 0.93059 0.89485 0.96138 1.22131 1.00122 0.94812 0.92535 0.87430 1.21648 0.98409 0.99567 0.95797 1.20796 0.98001 0.84718 0.95115 1.44129 1.39663 1.01797 1.47050 1.19254 0.95404 0.99194 1.24635 0.92486 1.25721 0.97824 1.00360 0.99391 1.70100 1.21336 1.15616 1.50541 0.85550 0.79777 0.77757 0.78649 1.20430 1.21906 1.20577 1.19725 0.92113 0.95386 0.85894 1.21999 0.96747 0.96403 0.97812 0.90440 1.22388 0.98440 0.93196 0.86307 0.85790 0.89991 0.83621 0.92163 0.89020 0.92593 0.91054 0.91751 0.90771 0.91792 0.89365 0.92207 0.93298 0.91647 0.91255 0.90306 0.93800 0.93084 0.96049 0.94093 0.92656 0.98117 0.89584 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.29 11.67 67.78 0.79 -3.50 16 2 C -0.15 -3.31 6.98 25.64 0.18 -3.14 16 3 C -0.04 -0.94 0.51 -53.67 -0.03 -0.97 16 4 C -0.12 -2.60 7.49 71.98 0.54 -2.06 16 5 C -0.11 -3.01 4.41 30.59 0.13 -2.88 16 6 C 0.06 1.44 5.33 71.98 0.38 1.83 16 7 O -0.42 -11.64 10.70 -148.98 -1.59 -13.23 16 8 C 0.03 0.49 11.01 113.37 1.25 1.74 16 9 C 0.54 16.82 5.00 87.66 0.44 17.26 16 10 O -0.58 -21.25 16.33 -3.02 -0.05 -21.30 16 11 N -0.61 -18.70 2.59 -810.19 -2.10 -20.80 16 12 C 0.11 3.23 6.21 87.08 0.54 3.77 16 13 C -0.08 -2.29 3.59 -9.59 -0.03 -2.32 16 14 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 15 C -0.12 -3.69 4.74 30.13 0.14 -3.55 16 16 C 0.14 5.48 6.48 85.75 0.56 6.04 16 17 N -0.60 -28.57 2.88 -706.57 -2.04 -30.61 16 18 C -0.25 -13.51 9.65 84.04 0.81 -12.69 16 19 H 0.06 3.03 7.86 -2.91 -0.02 3.01 16 20 C -0.04 -1.98 5.03 84.86 0.43 -1.56 16 21 N -0.93 -52.73 11.24 21.65 0.24 -52.48 16 22 Si 0.95 43.89 29.57 68.60 2.03 45.92 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 C 0.20 8.68 4.67 85.63 0.40 9.08 16 27 C -0.11 -3.72 2.81 -10.87 -0.03 -3.75 16 28 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 29 C 0.12 3.91 3.53 86.41 0.30 4.21 16 30 H 0.12 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.08 2.24 5.75 -2.91 -0.02 2.22 16 32 H 0.15 2.48 6.72 -2.91 -0.02 2.46 16 33 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 34 H 0.09 1.42 6.26 -2.39 -0.01 1.40 16 35 H 0.05 1.30 8.08 -2.39 -0.02 1.28 16 36 H 0.07 2.27 4.63 -2.38 -0.01 2.26 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.29 6.36 -2.39 -0.02 1.27 16 39 H 0.06 1.26 6.49 -2.39 -0.02 1.25 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 42 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 1.89 7.76 -2.39 -0.02 1.87 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 45 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 46 H 0.04 1.55 7.15 -2.39 -0.02 1.53 16 47 H 0.05 2.02 7.97 -2.39 -0.02 2.01 16 48 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 50 H 0.06 2.80 6.27 -2.38 -0.01 2.78 16 51 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 52 H 0.09 2.73 4.76 -2.39 -0.01 2.71 16 53 H 0.06 2.33 6.23 -2.39 -0.01 2.31 16 Total: -1.00 -65.54 391.91 4.18 -61.36 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.88 Total: 23.61 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 6.80 Total: 7.52 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -3.89 Total: -103.89 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -1.64 Total: -34.53 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -65.54 4.18 -61.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707220569.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.943 kcal (2) G-P(sol) polarization free energy of solvation -65.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds