Wall clock time and date at job start Tue Mar 31 2020 20:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99756 * 2 1 4 4 C 1.53007 * 109.47030 * 125.00047 * 3 2 1 5 5 O 1.42897 * 109.46911 * 179.97438 * 4 3 2 6 6 C 1.42908 * 113.99793 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47079 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99897 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00036 * 179.97438 * 7 6 5 10 10 C 1.46931 * 120.64111 * 359.72229 * 9 7 6 11 11 C 1.52755 * 109.01474 * 233.60960 * 10 9 7 12 12 C 1.53033 * 109.40295 * 305.59920 * 11 10 9 13 13 C 1.53053 * 109.43512 * 181.11776 * 12 11 10 14 14 C 1.53187 * 109.32684 * 58.69128 * 13 12 11 15 15 N 1.46928 * 108.77310 * 54.64368 * 14 13 12 16 16 C 1.36930 * 120.63927 * 126.33632 * 15 14 13 17 17 H 1.08007 * 120.00078 * 208.01624 * 16 15 14 18 18 C 1.38813 * 120.00086 * 28.01675 * 16 15 14 19 19 N 1.31616 * 120.00212 * 17.52879 * 18 16 15 20 20 Si 1.86804 * 119.99831 * 197.52674 * 18 16 15 21 21 H 1.48497 * 109.46974 * 94.06982 * 20 18 16 22 22 H 1.48494 * 109.46996 * 214.06682 * 20 18 16 23 23 H 1.48499 * 109.47332 * 334.06699 * 20 18 16 24 24 C 1.46928 * 118.71814 * 306.35558 * 15 14 13 25 25 C 1.53028 * 109.45901 * 301.18170 * 12 11 10 26 26 C 1.53044 * 109.54800 * 61.18282 * 12 11 10 27 27 C 1.46930 * 120.64137 * 179.97438 * 9 7 6 28 28 H 1.07994 * 120.00147 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99481 * 0.02562 * 1 2 3 30 30 H 1.07996 * 119.99801 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47407 * 4.99788 * 3 2 1 32 32 H 1.09003 * 109.46761 * 244.99351 * 3 2 1 33 33 H 1.08998 * 109.47237 * 59.99637 * 4 3 2 34 34 H 1.09000 * 109.47005 * 299.99761 * 4 3 2 35 35 H 1.08994 * 109.47102 * 299.99946 * 6 5 4 36 36 H 1.08999 * 109.46829 * 59.99556 * 6 5 4 37 37 H 1.09000 * 109.58303 * 353.44729 * 10 9 7 38 38 H 1.09005 * 109.58674 * 113.86377 * 10 9 7 39 39 H 1.09004 * 109.56209 * 185.56085 * 11 10 9 40 40 H 1.08999 * 109.35441 * 65.51460 * 11 10 9 41 41 H 1.08999 * 109.48945 * 178.64824 * 13 12 11 42 42 H 1.08994 * 109.49483 * 298.73490 * 13 12 11 43 43 H 1.09000 * 109.58676 * 294.85151 * 14 13 12 44 44 H 1.09000 * 109.70267 * 174.49877 * 14 13 12 45 45 H 0.96996 * 120.00341 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.58268 * 293.83892 * 24 15 14 47 47 H 1.09000 * 109.69541 * 173.48814 * 24 15 14 48 48 H 1.09006 * 109.49248 * 61.26603 * 25 12 11 49 49 H 1.08998 * 109.49332 * 181.34867 * 25 12 11 50 50 H 1.08993 * 109.49729 * 178.72450 * 26 12 11 51 51 H 1.09000 * 109.49642 * 58.63335 * 26 12 11 52 52 H 1.09002 * 109.58499 * 246.11552 * 27 9 7 53 53 H 1.08994 * 109.59180 * 6.40693 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 8 3.7499 2.5704 1.1813 6 6 4.6895 2.6992 2.2504 7 6 5.3823 4.0338 2.1522 8 8 5.0997 4.7992 1.2548 9 7 6.3160 4.3769 3.0616 10 6 6.6649 3.4630 4.1579 11 6 6.5287 4.2047 5.4864 12 6 7.3677 5.4837 5.4430 13 6 7.2540 6.2132 6.7837 14 6 7.7365 5.2891 7.9061 15 7 9.0930 4.8243 7.5856 16 6 10.1147 4.9808 8.4837 17 1 11.1320 5.0752 8.1333 18 6 9.8431 5.0179 9.8445 19 7 8.6925 4.5681 10.2985 20 14 11.1107 5.7064 11.0314 21 1 10.8301 7.1439 11.2763 22 1 11.0420 4.9630 12.3150 23 1 12.4677 5.5596 10.4464 24 6 9.3320 4.1887 6.2827 25 6 8.8315 5.1245 5.1780 26 6 6.8561 6.3940 4.3241 27 6 7.0007 5.6743 2.9790 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 3.7400 0.5066 1.0922 34 1 2.4772 1.2356 2.1130 35 1 4.1663 2.6302 3.2041 36 1 5.4283 1.9007 2.1827 37 1 5.9907 2.6067 4.1483 38 1 7.6932 3.1224 4.0365 39 1 6.8795 3.5670 6.2980 40 1 5.4823 4.4614 5.6512 41 1 7.8703 7.1120 6.7621 42 1 6.2144 6.4886 6.9609 43 1 7.0667 4.4332 7.9881 44 1 7.7505 5.8339 8.8501 45 1 8.5026 4.5945 11.2493 46 1 8.7920 3.2431 6.2329 47 1 10.3989 4.0075 6.1525 48 1 8.9145 4.6250 4.2127 49 1 9.4334 6.0332 5.1708 50 1 7.4396 7.3144 4.3085 51 1 5.8066 6.6309 4.4991 52 1 8.0568 5.5168 2.7602 53 1 6.5497 6.2759 2.1898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725017643.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:33 Heat of formation + Delta-G solvation = -44.421490 kcal Electronic energy + Delta-G solvation = -30108.021469 eV Core-core repulsion = 26173.589001 eV Total energy + Delta-G solvation = -3934.432467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.62215 -39.03876 -37.88496 -35.90699 -35.30051 -33.62486 -31.73680 -30.89985 -30.20823 -29.96036 -28.36585 -27.27725 -24.87131 -23.50442 -23.38627 -23.02475 -21.95551 -20.76746 -20.19287 -19.35115 -17.84111 -17.46663 -16.83174 -16.66518 -16.40146 -15.75960 -15.53559 -15.02859 -14.80237 -14.48811 -14.20575 -14.12235 -13.94411 -13.90120 -13.51453 -13.34379 -13.11783 -12.90645 -12.84012 -12.55860 -12.21940 -11.82971 -11.68649 -11.53931 -11.45933 -11.43848 -11.35313 -11.23572 -11.04122 -10.77250 -10.58172 -10.40566 -10.11337 -10.10255 -9.99592 -9.80206 -9.76101 -9.66269 -9.51101 -9.40173 -8.54465 -8.46131 -6.66536 -5.80818 -3.22462 1.82561 2.53763 2.63363 3.35971 3.43631 3.44352 3.60049 4.38572 4.48080 4.56801 4.68083 4.76162 4.82383 4.86953 4.95104 5.00071 5.04946 5.06364 5.07585 5.19920 5.31311 5.38359 5.40641 5.44512 5.45900 5.57739 5.64260 5.65710 5.75577 5.83869 5.93122 5.99168 6.08490 6.10552 6.21297 6.21669 6.28685 6.33648 6.38119 6.50995 6.53331 6.63174 6.69616 6.79836 6.81668 6.88301 6.97805 7.34228 7.37259 7.65450 7.78516 8.12570 8.43729 9.20193 9.83951 10.40519 11.27371 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022040 B = 0.002145 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.090544 B =13052.730766 C =13757.731749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.365 6.365 6 C 0.046 3.954 7 C 0.516 3.484 8 O -0.529 6.529 9 N -0.605 5.605 10 C 0.104 3.896 11 C -0.127 4.127 12 C -0.046 4.046 13 C -0.130 4.130 14 C 0.171 3.829 15 N -0.590 5.590 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.146 3.854 25 C -0.126 4.126 26 C -0.124 4.124 27 C 0.114 3.886 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.019 0.981 44 H 0.084 0.916 45 H 0.253 0.747 46 H 0.018 0.982 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.061 0.939 52 H 0.071 0.929 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.996 -6.617 -16.640 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.172 4.172 3 C -0.130 4.130 4 C -0.012 4.012 5 O -0.284 6.284 6 C -0.034 4.034 7 C 0.303 3.697 8 O -0.405 6.405 9 N -0.340 5.340 10 C -0.018 4.018 11 C -0.165 4.165 12 C -0.046 4.046 13 C -0.169 4.169 14 C 0.045 3.955 15 N -0.313 5.313 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.019 3.981 25 C -0.165 4.165 26 C -0.162 4.162 27 C -0.008 4.008 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.091 0.909 51 H 0.080 0.920 52 H 0.089 0.911 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.216 -6.089 -17.088 21.328 hybrid contribution 0.656 0.054 1.079 1.264 sum -10.560 -6.036 -16.008 20.105 Atomic orbital electron populations 1.23922 0.95902 1.02106 1.00498 1.22803 0.96028 0.97970 1.00449 1.20639 0.97934 0.95937 0.98510 1.22499 0.94023 0.86069 0.98637 1.87982 1.54339 1.37478 1.48563 1.22245 0.93074 0.96171 0.91870 1.20152 0.79547 0.88122 0.81899 1.90700 1.63410 1.52520 1.33846 1.48080 1.39395 1.18953 1.27585 1.21832 1.01473 0.91878 0.86649 1.21977 1.00151 0.97907 0.96421 1.20375 0.95038 0.94195 0.95019 1.22227 0.99415 0.99659 0.95607 1.20781 0.84827 0.94411 0.95467 1.44015 1.06582 1.67123 1.13595 1.19193 0.88522 1.43886 0.86444 0.91800 1.25015 0.97239 1.00256 0.97126 1.70028 1.23858 1.47710 1.13110 0.86304 0.81146 0.78806 0.80693 1.21534 1.21836 1.20434 1.20911 0.97964 0.92994 0.86198 1.22160 0.94991 1.00827 0.98564 1.22033 1.01493 0.98647 0.94022 1.21662 0.96886 0.83595 0.98668 0.88269 0.88378 0.87132 0.90477 0.89948 0.92962 0.92929 0.90156 0.90255 0.90533 0.90463 0.88909 0.92171 0.92648 0.93513 0.96253 0.89776 0.93704 0.96460 0.93174 0.93037 0.92310 0.90900 0.91996 0.91123 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.15 14.32 29.01 0.42 -0.73 16 2 C -0.15 -1.01 9.52 -36.03 -0.34 -1.35 16 3 C -0.09 -0.73 6.03 -27.88 -0.17 -0.90 16 4 C 0.06 0.55 5.92 37.16 0.22 0.77 16 5 O -0.37 -4.45 9.88 -55.14 -0.54 -4.99 16 6 C 0.05 0.49 4.77 36.00 0.17 0.66 16 7 C 0.52 7.12 7.78 -10.99 -0.09 7.04 16 8 O -0.53 -9.39 15.91 -14.36 -0.23 -9.62 16 9 N -0.60 -7.58 2.98 -173.00 -0.52 -8.09 16 10 C 0.10 1.17 5.85 -3.93 -0.02 1.14 16 11 C -0.13 -1.73 4.13 -26.84 -0.11 -1.84 16 12 C -0.05 -0.68 0.51 -154.43 -0.08 -0.76 16 13 C -0.13 -2.32 4.90 -26.61 -0.13 -2.45 16 14 C 0.17 3.81 4.85 -3.71 -0.02 3.80 16 15 N -0.59 -13.90 2.99 -172.32 -0.52 -14.42 16 16 C -0.25 -6.65 9.58 -15.06 -0.14 -6.80 16 17 H 0.06 1.68 7.89 -52.48 -0.41 1.27 16 18 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 19 N -0.90 -25.46 11.22 55.49 0.62 -24.84 16 20 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.15 2.79 6.05 -3.71 -0.02 2.77 16 25 C -0.13 -1.98 4.14 -26.62 -0.11 -2.09 16 26 C -0.12 -1.63 4.90 -26.59 -0.13 -1.76 16 27 C 0.11 1.45 5.97 -3.69 -0.02 1.42 16 28 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 29 H 0.10 0.58 7.84 -52.48 -0.41 0.17 16 30 H 0.11 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.08 0.65 7.79 -51.93 -0.40 0.24 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.70 7.68 -51.93 -0.40 0.31 16 36 H 0.08 0.65 7.95 -51.93 -0.41 0.24 16 37 H 0.08 0.68 5.94 -51.93 -0.31 0.37 16 38 H 0.08 0.86 6.73 -51.93 -0.35 0.51 16 39 H 0.09 1.46 4.98 -51.93 -0.26 1.20 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.02 0.45 6.66 -51.93 -0.35 0.10 16 44 H 0.08 2.17 6.06 -51.93 -0.31 1.86 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.02 0.33 6.72 -51.93 -0.35 -0.02 16 47 H 0.05 0.97 7.94 -51.93 -0.41 0.56 16 48 H 0.05 0.70 5.00 -51.93 -0.26 0.44 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 52 H 0.07 0.85 6.66 -51.93 -0.35 0.51 16 53 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 LS Contribution 398.56 15.07 6.01 6.01 Total: -1.00 -31.47 398.56 -10.01 -41.48 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -9.14 Total: -0.70 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -0.67 Total: -1.12 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.41 Total: -47.35 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.77 Total: -14.61 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.47 -10.01 -41.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725017643.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.943 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds