Wall clock time and date at job start Tue Mar 31 2020 19:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 120.00187 * 2 1 4 4 C 1.31001 * 119.99872 * 179.97438 * 2 1 3 5 5 C 1.50693 * 120.00324 * 0.02562 * 4 2 1 6 6 H 1.08999 * 115.56002 * 25.70433 * 5 4 2 7 7 C 1.53006 * 117.50229 * 171.38975 * 5 4 2 8 8 H 1.09002 * 117.51904 * 214.97336 * 7 5 4 9 9 C 1.50700 * 117.49490 * 359.97438 * 7 5 4 10 10 O 1.21290 * 119.99507 * 68.62535 * 9 7 5 11 11 N 1.34771 * 120.00651 * 248.62171 * 9 7 5 12 12 C 1.46499 * 120.00240 * 184.09342 * 11 9 7 13 13 C 1.52995 * 113.41346 * 306.76213 * 12 11 9 14 14 C 1.52997 * 109.47301 * 291.99188 * 13 12 11 15 15 O 1.42902 * 109.47405 * 174.90788 * 14 13 12 16 16 C 1.53494 * 114.20582 * 173.56438 * 12 11 9 17 17 N 1.47063 * 87.98554 * 220.34486 * 16 12 11 18 18 C 1.36936 * 136.05706 * 207.08681 * 17 16 12 19 19 H 1.08006 * 120.00029 * 358.10836 * 18 17 16 20 20 C 1.38813 * 120.00072 * 178.11633 * 18 17 16 21 21 N 1.31622 * 120.00026 * 8.81112 * 20 18 17 22 22 Si 1.86799 * 120.00261 * 188.81886 * 20 18 17 23 23 H 1.48503 * 109.47164 * 94.94756 * 22 20 18 24 24 H 1.48495 * 109.47465 * 214.95205 * 22 20 18 25 25 H 1.48508 * 109.47014 * 334.94771 * 22 20 18 26 26 C 1.47065 * 87.88271 * 27.12178 * 17 16 12 27 27 C 1.53000 * 59.99926 * 107.49179 * 7 5 4 28 28 C 1.53001 * 117.49579 * 107.49320 * 27 7 5 29 29 C 1.52998 * 117.49858 * 252.48796 * 27 7 5 30 30 H 1.08997 * 109.47187 * 270.00154 * 1 2 3 31 31 H 1.08996 * 109.47125 * 30.00589 * 1 2 3 32 32 H 1.08998 * 109.46890 * 150.00126 * 1 2 3 33 33 H 1.08997 * 109.47014 * 269.99857 * 3 2 1 34 34 H 1.09003 * 109.46794 * 29.99481 * 3 2 1 35 35 H 1.08994 * 109.47280 * 149.99136 * 3 2 1 36 36 H 1.08000 * 119.99793 * 180.02562 * 4 2 1 37 37 H 0.97005 * 119.99475 * 4.09155 * 11 9 7 38 38 H 1.09003 * 109.47119 * 51.98991 * 13 12 11 39 39 H 1.09003 * 109.47077 * 171.99061 * 13 12 11 40 40 H 1.08999 * 109.47364 * 294.90855 * 14 13 12 41 41 H 1.09000 * 109.47218 * 54.91021 * 14 13 12 42 42 H 0.96701 * 114.00131 * 180.02562 * 15 14 13 43 43 H 1.09005 * 113.47071 * 105.56074 * 16 12 11 44 44 H 1.09006 * 113.46639 * 335.12265 * 16 12 11 45 45 H 0.96996 * 119.99800 * 180.02562 * 21 20 18 46 46 H 1.09002 * 113.47195 * 87.66643 * 26 17 16 47 47 H 1.09004 * 113.46094 * 218.10211 * 26 17 16 48 48 H 1.09000 * 109.47084 * 60.00051 * 28 27 7 49 49 H 1.09002 * 109.46671 * 180.02562 * 28 27 7 50 50 H 1.08997 * 109.46930 * 299.99456 * 28 27 7 51 51 H 1.08999 * 109.47022 * 60.00354 * 29 27 7 52 52 H 1.09001 * 109.47237 * 180.02562 * 29 27 7 53 53 H 1.09000 * 109.47253 * 300.00305 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4086 -2.4396 0.0005 6 1 0.4063 -2.4040 -0.4264 7 6 2.2175 -3.7224 -0.2021 8 1 1.7476 -4.5310 -0.7620 9 6 3.7067 -3.5840 -0.3869 10 8 4.4014 -3.2209 0.5386 11 7 4.2666 -3.8637 -1.5805 12 6 5.7225 -3.8160 -1.7359 13 6 6.3398 -2.4931 -1.2779 14 6 5.9071 -1.3731 -2.2261 15 8 6.3851 -0.1200 -1.7328 16 6 6.2263 -4.3065 -3.1003 17 7 7.3302 -4.9744 -2.3945 18 6 8.6116 -5.3492 -2.6988 19 1 9.0031 -5.1780 -3.6908 20 6 9.4073 -5.9492 -1.7326 21 7 8.8825 -6.3158 -0.5826 22 14 11.2231 -6.2361 -2.0642 23 1 12.0123 -5.1079 -1.5077 24 1 11.6498 -7.5040 -1.4197 25 1 11.4508 -6.3245 -3.5290 26 6 6.4518 -5.0635 -1.2183 27 6 1.6423 -3.3903 1.1762 28 6 0.4513 -4.2183 1.6628 29 6 2.6232 -2.9438 2.2622 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 2.4423 1.6197 -1.0276 34 1 1.6714 2.0647 0.5138 35 1 3.2129 1.1748 0.5139 36 1 3.2420 -1.1345 0.0009 37 1 3.7055 -4.0966 -2.3367 38 1 6.0011 -2.2647 -0.2673 39 1 7.4266 -2.5770 -1.2866 40 1 6.3223 -1.5555 -3.2173 41 1 4.8191 -1.3485 -2.2868 42 1 6.1469 0.6370 -2.2853 43 1 6.5551 -3.5010 -3.7569 44 1 5.5431 -4.9993 -3.5918 45 1 9.4386 -6.7347 0.0928 46 1 5.8288 -5.9578 -1.2084 47 1 6.9726 -4.9014 -0.2745 48 1 0.7364 -5.2691 1.7152 49 1 0.1490 -3.8737 2.6518 50 1 -0.3804 -4.1017 0.9680 51 1 3.1361 -2.0382 1.9384 52 1 2.0777 -2.7428 3.1842 53 1 3.3547 -3.7326 2.4377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725201275.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:49 Heat of formation + Delta-G solvation = -17.265218 kcal Electronic energy + Delta-G solvation = -31212.173430 eV Core-core repulsion = 27278.918546 eV Total energy + Delta-G solvation = -3933.254883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.82545 -40.50806 -38.33286 -37.72142 -36.35547 -35.21401 -33.82950 -31.97114 -30.59507 -29.18121 -28.70949 -28.53731 -27.67974 -26.70652 -25.51359 -23.96521 -23.36890 -21.28177 -20.30139 -19.94846 -18.82153 -18.76784 -18.38887 -17.63066 -17.17038 -16.74008 -16.47227 -15.98524 -15.71246 -15.63930 -15.19655 -14.99554 -14.85384 -14.70900 -14.61113 -14.45129 -14.06361 -13.85084 -13.72788 -13.24773 -13.18321 -13.15948 -13.11266 -13.01593 -12.86807 -12.76974 -12.70392 -12.64434 -12.36449 -12.32524 -12.23584 -12.03129 -11.77738 -11.57345 -11.29727 -11.22897 -10.94145 -10.87619 -10.71623 -10.22076 -9.94057 -9.33391 -9.01690 -7.96104 -5.29580 1.16605 1.41930 1.46031 1.54006 1.70312 2.14586 2.47377 2.98861 3.12105 3.29208 3.34925 3.60094 3.68093 3.82124 3.84516 4.10666 4.15363 4.16463 4.22998 4.28980 4.30159 4.35974 4.42071 4.46426 4.58908 4.70251 4.73730 4.76635 4.77709 4.86875 4.89023 4.92223 5.02578 5.03794 5.06247 5.12034 5.13584 5.15405 5.16349 5.19476 5.23877 5.29000 5.31406 5.39073 5.44309 5.61436 5.77028 5.84329 5.86016 6.06917 6.75549 6.82561 6.91024 7.47742 7.54453 8.52062 9.21945 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.003315 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.597572 B = 8443.890662 C = 9467.871455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.122 4.122 3 C -0.119 4.119 4 C -0.155 4.155 5 C -0.068 4.068 6 H 0.148 0.852 7 C -0.189 4.189 8 H 0.149 0.851 9 C 0.539 3.461 10 O -0.562 6.562 11 N -0.701 5.701 12 C 0.155 3.845 13 C -0.093 4.093 14 C 0.097 3.903 15 O -0.592 6.592 16 C 0.125 3.875 17 N -0.629 5.629 18 C -0.228 4.228 19 H 0.095 0.905 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.981 3.019 23 H -0.290 1.290 24 H -0.295 1.295 25 H -0.259 1.259 26 C 0.158 3.842 27 C -0.087 4.087 28 C -0.111 4.111 29 C -0.100 4.100 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.414 0.586 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.395 0.605 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.247 0.753 46 H 0.014 0.986 47 H 0.020 0.980 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.082 0.918 51 H 0.048 0.952 52 H 0.058 0.942 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.742 12.498 -2.916 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.122 4.122 3 C -0.175 4.175 4 C -0.173 4.173 5 C -0.086 4.086 6 H 0.166 0.834 7 C -0.210 4.210 8 H 0.167 0.833 9 C 0.327 3.673 10 O -0.441 6.441 11 N -0.353 5.353 12 C 0.067 3.933 13 C -0.131 4.131 14 C 0.020 3.980 15 O -0.400 6.400 16 C -0.001 4.001 17 N -0.355 5.355 18 C -0.356 4.356 19 H 0.112 0.888 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.809 3.191 23 H -0.217 1.217 24 H -0.222 1.222 25 H -0.183 1.183 26 C 0.031 3.969 27 C -0.088 4.088 28 C -0.168 4.168 29 C -0.157 4.157 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.251 0.749 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.244 0.756 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.031 0.969 47 H 0.039 0.961 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.101 0.899 51 H 0.067 0.933 52 H 0.077 0.923 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.674 12.214 -1.777 25.816 hybrid contribution 1.404 -0.636 -0.446 1.604 sum -21.270 11.579 -2.222 24.319 Atomic orbital electron populations 1.20917 0.90346 1.03331 1.02662 1.21783 0.97149 0.94371 0.98863 1.20839 0.99150 0.95100 1.02429 1.21909 0.97961 0.93030 1.04419 1.21629 0.99020 0.86758 1.01213 0.83447 1.22588 0.90522 1.03429 1.04493 0.83348 1.20196 0.89718 0.75493 0.81883 1.90685 1.64740 1.47127 1.41542 1.45715 1.06012 1.70789 1.12832 1.21805 0.79527 0.94015 0.97940 1.21202 0.99225 0.91994 1.00701 1.21937 0.97505 0.82773 0.95776 1.86474 1.80702 1.17522 1.55313 1.22819 0.89023 0.95233 0.92985 1.45571 1.08685 1.68907 1.12366 1.19342 0.85961 1.32924 0.97366 0.88781 1.25733 1.02833 1.01143 0.96420 1.70092 1.35709 1.46463 1.07868 0.85024 0.79371 0.76517 0.78222 1.21702 1.22225 1.18311 1.22269 0.89427 0.93061 0.92142 1.21694 0.98376 1.00365 0.88340 1.21405 0.94621 0.98590 1.02159 1.21253 0.96979 1.00778 0.96676 0.90945 0.91005 0.90468 0.90754 0.90489 0.93730 0.90071 0.74851 0.91166 0.93970 0.92720 0.92552 0.75559 0.91522 0.91940 0.94397 0.96855 0.96101 0.92165 0.91152 0.89950 0.93282 0.92290 0.94488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.57 71.24 0.68 -0.71 16 2 C -0.12 -2.22 6.05 -16.49 -0.10 -2.32 16 3 C -0.12 -2.06 10.02 71.24 0.71 -1.34 16 4 C -0.16 -3.50 7.03 25.64 0.18 -3.32 16 5 C -0.07 -1.26 5.07 -11.54 -0.06 -1.32 16 6 H 0.15 1.79 5.99 -2.39 -0.01 1.77 16 7 C -0.19 -4.18 5.91 -11.54 -0.07 -4.25 16 8 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 9 C 0.54 16.97 6.16 87.66 0.54 17.51 16 10 O -0.56 -22.78 10.11 -3.06 -0.03 -22.81 16 11 N -0.70 -20.86 5.07 -422.38 -2.14 -23.01 16 12 C 0.16 6.02 0.83 4.07 0.00 6.02 16 13 C -0.09 -3.82 4.89 30.59 0.15 -3.67 16 14 C 0.10 3.03 6.81 71.98 0.49 3.52 16 15 O -0.59 -18.21 13.66 -148.98 -2.04 -20.25 16 16 C 0.12 4.82 7.83 83.17 0.65 5.47 16 17 N -0.63 -32.99 3.56 -738.48 -2.63 -35.61 16 18 C -0.23 -13.04 10.73 84.03 0.90 -12.14 16 19 H 0.09 5.02 7.84 -2.91 -0.02 4.99 16 20 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 21 N -0.95 -61.03 11.62 21.65 0.25 -60.78 16 22 Si 0.98 47.26 29.56 68.60 2.03 49.29 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 26 C 0.16 8.18 6.73 83.17 0.56 8.74 16 27 C -0.09 -1.86 2.70 -52.18 -0.14 -2.00 16 28 C -0.11 -1.64 9.85 71.98 0.71 -0.93 16 29 C -0.10 -2.80 7.93 71.98 0.57 -2.23 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 32 H 0.08 0.75 5.88 -2.39 -0.01 0.74 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 35 H 0.04 0.95 8.06 -2.39 -0.02 0.93 16 36 H 0.08 2.49 6.31 -2.91 -0.02 2.47 16 37 H 0.41 9.02 8.68 -92.70 -0.80 8.22 16 38 H 0.07 3.25 5.74 -2.39 -0.01 3.24 16 39 H 0.04 2.08 7.93 -2.39 -0.02 2.07 16 40 H 0.05 1.56 6.93 -2.39 -0.02 1.55 16 41 H 0.06 1.53 7.92 -2.39 -0.02 1.51 16 42 H 0.39 7.37 9.12 -74.06 -0.68 6.70 16 43 H 0.07 2.33 6.83 -2.38 -0.02 2.31 16 44 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.02 1.27 7.23 -2.38 -0.02 1.26 16 48 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.07 0.96 7.92 -2.39 -0.02 0.94 16 50 H 0.08 0.82 7.90 -2.39 -0.02 0.80 16 51 H 0.05 1.58 5.30 -2.39 -0.01 1.57 16 52 H 0.06 1.39 7.92 -2.39 -0.02 1.38 16 53 H 0.04 1.25 7.26 -2.39 -0.02 1.23 16 Total: -1.00 -80.34 412.68 1.13 -79.21 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.56 Total: 30.49 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 6.25 Total: 3.47 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -4.52 Total: -119.40 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -2.07 Total: -43.06 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -80.34 1.13 -79.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725201275.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.944 kcal (2) G-P(sol) polarization free energy of solvation -80.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds