Wall clock time and date at job start Tue Mar 31 2020 20:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32990 * 120.00364 * 2 1 4 4 C 1.47109 * 119.99862 * 352.66934 * 3 2 1 5 5 O 1.21618 * 119.99482 * 352.67274 * 4 3 2 6 6 N 1.34773 * 120.00080 * 172.94183 * 4 3 2 7 7 C 1.46929 * 120.63135 * 4.65691 * 6 4 3 8 8 C 1.52756 * 109.01027 * 233.58241 * 7 6 4 9 9 C 1.53043 * 109.38438 * 305.59226 * 8 7 6 10 10 O 1.42897 * 109.45010 * 181.25663 * 9 8 7 11 11 C 1.42893 * 114.00585 * 89.93223 * 10 9 8 12 12 C 1.52999 * 109.47447 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47205 * 180.02562 * 12 11 10 14 14 N 1.46502 * 109.47216 * 179.97438 * 13 12 11 15 15 C 1.36938 * 119.99986 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99740 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99548 * 180.02562 * 15 14 13 18 18 N 1.31613 * 120.00336 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99535 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47267 * 59.99795 * 19 17 15 21 21 H 1.48498 * 109.47029 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47065 * 299.99579 * 19 17 15 23 23 C 1.53037 * 109.53798 * 61.23658 * 9 8 7 24 24 C 1.46923 * 120.62947 * 184.93877 * 6 4 3 25 25 C 1.50700 * 119.99730 * 179.97438 * 2 1 3 26 26 C 1.53003 * 117.50205 * 8.74976 * 25 2 1 27 27 C 1.53002 * 117.50283 * 300.08747 * 25 2 1 28 28 H 1.09006 * 109.46458 * 84.48825 * 1 2 3 29 29 H 1.09001 * 109.47238 * 204.48208 * 1 2 3 30 30 H 1.08995 * 109.46942 * 324.48584 * 1 2 3 31 31 H 1.07992 * 120.00476 * 172.67555 * 3 2 1 32 32 H 1.09000 * 109.58261 * 353.42022 * 7 6 4 33 33 H 1.09005 * 109.58327 * 113.83992 * 7 6 4 34 34 H 1.08997 * 109.56594 * 185.55365 * 8 7 6 35 35 H 1.09007 * 109.35922 * 65.49633 * 8 7 6 36 36 H 1.09001 * 109.45517 * 301.21651 * 9 8 7 37 37 H 1.09000 * 109.47134 * 300.00453 * 11 10 9 38 38 H 1.08997 * 109.46900 * 59.99817 * 11 10 9 39 39 H 1.08999 * 109.46682 * 299.99884 * 12 11 10 40 40 H 1.08997 * 109.47435 * 59.99882 * 12 11 10 41 41 H 1.09000 * 109.47135 * 300.00042 * 13 12 11 42 42 H 1.09004 * 109.46856 * 60.00189 * 13 12 11 43 43 H 0.96996 * 119.99510 * 0.02562 * 14 13 12 44 44 H 0.97002 * 119.99816 * 180.02562 * 18 17 15 45 45 H 1.09004 * 109.49513 * 178.68392 * 23 9 8 46 46 H 1.09000 * 109.49636 * 58.59016 * 23 9 8 47 47 H 1.09003 * 109.58655 * 246.15961 * 24 6 4 48 48 H 1.09005 * 109.59099 * 6.43782 * 24 6 4 49 49 H 1.09003 * 115.54748 * 154.42500 * 25 2 1 50 50 H 1.08999 * 117.49378 * 0.02562 * 26 25 2 51 51 H 1.09001 * 117.49381 * 145.01579 * 26 25 2 52 52 H 1.08991 * 117.50448 * 214.98331 * 27 25 2 53 53 H 1.09005 * 117.49808 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4456 2.4205 -0.1626 5 8 0.2591 2.4119 -0.4296 6 7 2.0960 3.5924 -0.0209 7 6 3.5491 3.6208 0.1948 8 6 3.8503 4.4423 1.4470 9 6 3.2070 5.8246 1.3145 10 8 3.5124 6.6045 2.4722 11 6 4.7160 7.3664 2.3590 12 6 4.9424 8.1572 3.6490 13 6 6.2307 8.9735 3.5274 14 7 6.4472 9.7312 4.7625 15 6 7.5453 10.5399 4.8860 16 1 8.2515 10.6195 4.0729 17 6 7.7506 11.2574 6.0565 18 7 6.8902 11.1599 7.0476 19 14 9.2482 12.3612 6.2248 20 1 9.2171 13.4024 5.1665 21 1 9.2365 13.0112 7.5599 22 1 10.4818 11.5469 6.0821 23 6 1.6894 5.6729 1.1876 24 6 1.3646 4.8655 -0.0731 25 6 2.2605 -1.3051 0.0006 26 6 1.4521 -2.5877 -0.2053 27 6 2.0245 -2.2567 1.1753 28 1 -0.3632 0.0987 -1.0230 29 1 -0.3634 -0.9353 0.4259 30 1 -0.3633 0.8365 0.5970 31 1 3.2454 1.1555 0.1192 32 1 3.9185 2.6040 0.3289 33 1 4.0373 4.0787 -0.6655 34 1 4.9287 4.5522 1.5607 35 1 3.4418 3.9332 2.3201 36 1 3.5975 6.3233 0.4274 37 1 5.5575 6.6939 2.1930 38 1 4.6314 8.0565 1.5195 39 1 4.1009 8.8298 3.8153 40 1 5.0270 7.4669 4.4883 41 1 7.0724 8.3013 3.3609 42 1 6.1455 9.6640 2.6883 43 1 5.8126 9.6599 5.4926 44 1 7.0335 11.6616 7.8654 45 1 1.2299 6.6588 1.1168 46 1 1.3015 5.1522 2.0631 47 1 1.6710 5.4271 -0.9557 48 1 0.2932 4.6700 -0.1183 49 1 3.2638 -1.2689 -0.4240 50 1 0.3753 -2.4874 -0.3416 51 1 1.9237 -3.3954 -0.7651 52 1 2.8723 -2.8467 1.5232 53 1 1.3246 -1.9385 1.9480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725209777.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:55 Heat of formation + Delta-G solvation = -53.184880 kcal Electronic energy + Delta-G solvation = -28224.185464 eV Core-core repulsion = 24289.372987 eV Total energy + Delta-G solvation = -3934.812477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.40752 -39.82159 -38.84008 -37.70778 -36.80327 -34.35810 -34.22608 -33.01200 -32.14720 -31.27187 -28.84521 -27.06701 -26.04240 -24.86251 -24.40544 -23.78990 -23.21999 -22.47709 -21.90249 -20.36662 -19.15770 -19.08007 -18.55152 -17.62594 -17.10511 -16.82669 -16.61645 -16.47322 -16.34261 -15.69345 -15.48418 -15.40663 -15.23869 -15.01797 -14.80785 -14.60093 -14.18698 -14.02837 -13.82716 -13.56595 -13.35008 -13.30475 -12.94784 -12.83184 -12.77325 -12.51041 -12.45386 -12.41054 -12.26471 -12.19814 -12.10031 -12.05020 -11.85681 -11.76794 -11.69075 -11.48701 -11.33284 -10.93369 -10.61779 -10.37114 -10.03555 -9.56258 -9.02849 -7.95749 -5.26183 0.30561 1.47887 1.51771 1.58005 1.98900 2.19577 2.51434 2.66919 3.00201 3.37808 3.40756 3.66966 3.74933 3.87088 3.90412 3.95260 4.00096 4.05299 4.09173 4.12196 4.14490 4.24408 4.28686 4.29639 4.37149 4.47592 4.59742 4.60329 4.67971 4.71614 4.73416 4.76457 4.78074 4.81657 4.81889 4.83133 4.94248 4.99229 5.08389 5.13026 5.14861 5.23152 5.24765 5.32750 5.33371 5.45552 5.48410 5.50518 5.60116 6.25287 6.33874 6.40270 7.16410 7.31698 8.07040 8.30135 9.27843 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.001500 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.526342 B =18658.674876 C =19355.538523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.005 3.995 3 C -0.244 4.244 4 C 0.541 3.459 5 O -0.578 6.578 6 N -0.612 5.612 7 C 0.110 3.890 8 C -0.154 4.154 9 C 0.085 3.915 10 O -0.402 6.402 11 C 0.077 3.923 12 C -0.114 4.114 13 C 0.156 3.844 14 N -0.750 5.750 15 C -0.252 4.252 16 H 0.079 0.921 17 C -0.077 4.077 18 N -0.971 5.971 19 Si 0.979 3.021 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.275 1.275 23 C -0.125 4.125 24 C 0.119 3.881 25 C -0.144 4.144 26 C -0.168 4.168 27 C -0.164 4.164 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.153 0.847 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.026 0.974 43 H 0.373 0.627 44 H 0.252 0.748 45 H 0.086 0.914 46 H 0.056 0.944 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.130 0.870 50 H 0.100 0.900 51 H 0.114 0.886 52 H 0.114 0.886 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.249 -28.400 -20.341 36.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.003 3.997 3 C -0.264 4.264 4 C 0.334 3.666 5 O -0.461 6.461 6 N -0.344 5.344 7 C -0.012 4.012 8 C -0.193 4.193 9 C 0.028 3.972 10 O -0.322 6.322 11 C 0.001 3.999 12 C -0.152 4.152 13 C 0.029 3.971 14 N -0.393 5.393 15 C -0.384 4.384 16 H 0.097 0.903 17 C -0.269 4.269 18 N -0.622 5.622 19 Si 0.807 3.193 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.201 1.201 23 C -0.164 4.164 24 C -0.003 4.003 25 C -0.162 4.162 26 C -0.205 4.205 27 C -0.201 4.201 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.204 0.796 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.075 0.925 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.148 0.852 50 H 0.118 0.882 51 H 0.132 0.868 52 H 0.132 0.868 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.810 -28.300 -20.392 36.519 hybrid contribution 0.514 1.030 0.742 1.369 sum -10.296 -27.271 -19.650 35.154 Atomic orbital electron populations 1.21074 0.91669 1.02227 1.02803 1.22009 0.95810 0.93455 0.88379 1.22447 1.01520 0.90681 1.11775 1.18949 0.86320 0.85061 0.76228 1.90737 1.17154 1.87809 1.50411 1.48130 1.09287 1.05662 1.71301 1.21884 0.78843 1.02821 0.97638 1.22338 1.02341 0.95780 0.98795 1.22196 0.95240 0.91275 0.88487 1.87912 1.42887 1.61453 1.39950 1.22351 0.86918 0.93725 0.96929 1.21483 0.97375 0.98295 0.98042 1.20670 0.94899 0.92900 0.88614 1.42601 1.27848 1.53160 1.15704 1.19660 1.00981 1.18090 0.99642 0.90263 1.25657 1.02085 1.02847 0.96327 1.69829 1.39055 1.47056 1.06211 0.85137 0.79035 0.78613 0.76512 1.20184 1.22125 1.20139 1.21923 0.95018 1.01253 0.98162 1.21522 0.97956 0.83404 0.97446 1.21360 1.00774 0.87909 1.06165 1.23177 1.00424 0.97208 0.99685 1.23078 1.04128 1.01366 0.91487 0.91002 0.90927 0.91626 0.82918 0.87205 0.89142 0.89085 0.92078 0.90353 0.91739 0.91994 0.92462 0.92351 0.95416 0.95577 0.79578 0.93942 0.89569 0.92494 0.89592 0.89905 0.85216 0.88199 0.86797 0.86774 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 7.89 71.24 0.56 -1.44 16 2 C 0.01 0.08 5.81 -17.62 -0.10 -0.03 16 3 C -0.24 -3.65 8.98 23.43 0.21 -3.44 16 4 C 0.54 11.03 7.47 86.57 0.65 11.68 16 5 O -0.58 -15.47 12.76 -4.09 -0.05 -15.52 16 6 N -0.61 -10.26 2.98 -823.99 -2.45 -12.71 16 7 C 0.11 1.24 6.32 86.22 0.54 1.78 16 8 C -0.15 -2.31 5.68 30.53 0.17 -2.14 16 9 C 0.09 1.57 2.57 30.62 0.08 1.65 16 10 O -0.40 -10.35 9.99 -148.98 -1.49 -11.84 16 11 C 0.08 1.94 5.75 71.98 0.41 2.36 16 12 C -0.11 -3.81 5.70 30.59 0.17 -3.64 16 13 C 0.16 6.22 6.26 86.38 0.54 6.76 16 14 N -0.75 -39.41 5.60 -343.45 -1.92 -41.33 16 15 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 16 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 17 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 18 N -0.97 -60.53 13.06 21.65 0.28 -60.24 16 19 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 C -0.13 -2.30 5.73 30.67 0.18 -2.12 16 24 C 0.12 2.01 6.42 86.36 0.55 2.56 16 25 C -0.14 -1.35 6.00 -11.54 -0.07 -1.41 16 26 C -0.17 -1.24 9.77 30.62 0.30 -0.94 16 27 C -0.16 -1.27 10.10 30.62 0.31 -0.97 16 28 H 0.07 1.30 8.02 -2.38 -0.02 1.28 16 29 H 0.07 0.90 6.31 -2.39 -0.02 0.89 16 30 H 0.07 1.42 6.19 -2.39 -0.01 1.41 16 31 H 0.15 1.44 5.89 -2.91 -0.02 1.43 16 32 H 0.11 0.84 5.31 -2.39 -0.01 0.83 16 33 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.09 1.21 7.84 -2.39 -0.02 1.19 16 35 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.08 1.19 7.79 -2.39 -0.02 1.17 16 37 H 0.06 1.40 7.84 -2.39 -0.02 1.38 16 38 H 0.06 1.39 8.08 -2.39 -0.02 1.37 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.37 20.95 7.67 -92.71 -0.71 20.24 16 44 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 45 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 1.66 7.03 -2.38 -0.02 1.64 16 49 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.10 0.78 6.42 -2.39 -0.02 0.76 16 51 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 53 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -72.63 417.57 2.39 -70.24 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.18 Total: 30.01 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.82 Total: -6.86 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -4.10 Total: -114.28 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -1.54 Total: -27.36 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -72.63 2.39 -70.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725209777.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.059 kcal (2) G-P(sol) polarization free energy of solvation -72.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds