Wall clock time and date at job start Tue Mar 31 2020 20:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99964 * 2 1 4 4 C 1.53003 * 109.47427 * 130.03874 * 3 2 1 5 5 C 1.53003 * 109.47228 * 250.04056 * 3 2 1 6 6 C 1.53005 * 109.46926 * 299.99925 * 5 3 2 7 7 O 1.42894 * 109.46898 * 179.97438 * 6 5 3 8 8 C 1.42907 * 114.00003 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47056 * 10.03956 * 3 2 1 10 10 O 1.21285 * 119.99804 * 240.43181 * 9 3 2 11 11 N 1.34773 * 120.00333 * 60.15878 * 9 3 2 12 12 C 1.47175 * 125.58747 * 355.53862 * 11 9 3 13 13 C 1.54662 * 107.34525 * 180.88123 * 12 11 9 14 14 C 1.53302 * 102.72108 * 20.50471 * 13 12 11 15 15 C 1.53312 * 112.22222 * 88.17406 * 14 13 12 16 16 C 1.54662 * 102.71832 * 155.00569 * 15 14 13 17 17 N 1.47168 * 107.34993 * 339.49275 * 16 15 14 18 18 C 1.36939 * 125.59284 * 179.12420 * 17 16 15 19 19 H 1.07998 * 119.99971 * 179.97438 * 18 17 16 20 20 C 1.38802 * 120.00095 * 359.97171 * 18 17 16 21 21 N 1.31623 * 119.99963 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00134 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47376 * 59.99823 * 22 20 18 24 24 H 1.48503 * 109.47379 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46894 * 299.99800 * 22 20 18 26 26 C 1.47792 * 108.81497 * 359.10056 * 17 16 15 27 27 C 1.47784 * 125.59758 * 175.22199 * 11 9 3 28 28 H 1.07996 * 120.00022 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.99776 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00022 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.46826 * 296.95681 * 4 3 2 32 32 H 1.09001 * 109.46893 * 56.95236 * 4 3 2 33 33 H 1.09000 * 109.47076 * 176.95477 * 4 3 2 34 34 H 1.08998 * 109.47062 * 59.99758 * 5 3 2 35 35 H 1.09000 * 109.47500 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.47113 * 299.99801 * 6 5 3 37 37 H 1.09000 * 109.46887 * 59.99802 * 6 5 3 38 38 H 1.08998 * 109.46699 * 299.99987 * 8 7 6 39 39 H 1.08997 * 109.46778 * 59.99843 * 8 7 6 40 40 H 1.08992 * 109.47204 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.86799 * 300.31527 * 12 11 9 42 42 H 1.08992 * 109.87213 * 61.30450 * 12 11 9 43 43 H 1.09007 * 110.76251 * 138.81260 * 13 12 11 44 44 H 1.09002 * 110.76360 * 262.01207 * 13 12 11 45 45 H 1.09007 * 110.76148 * 273.30953 * 15 14 13 46 46 H 1.08994 * 110.76279 * 36.51058 * 15 14 13 47 47 H 1.08999 * 109.86796 * 98.93474 * 16 15 14 48 48 H 1.09005 * 109.86819 * 219.91335 * 16 15 14 49 49 H 0.97008 * 119.99870 * 179.97438 * 21 20 18 50 50 H 1.09003 * 110.39815 * 263.37930 * 26 17 16 51 51 H 1.08992 * 110.40166 * 140.95763 * 26 17 16 52 52 H 1.08999 * 110.40010 * 276.64363 * 27 11 9 53 53 H 1.09003 * 110.39688 * 39.06002 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.1222 1.2829 1.1044 5 6 2.7450 1.5006 -1.3559 6 6 3.7201 0.3487 -1.6073 7 8 4.3561 0.5310 -2.8739 8 6 5.2915 -0.4965 -3.2078 9 6 1.1030 2.4397 0.2477 10 8 0.9703 3.3140 -0.5824 11 7 0.3875 2.4799 1.3891 12 6 0.3771 1.4401 2.4306 13 6 -0.5997 1.9045 3.5361 14 6 -1.4726 2.9314 2.8057 15 6 -2.6837 2.2833 2.1248 16 6 -3.6960 3.4501 2.0481 17 7 -3.2917 4.4485 3.0509 18 6 -3.9221 5.6409 3.2875 19 1 -3.5468 6.3084 4.0491 20 6 -5.0433 5.9919 2.5484 21 7 -5.5010 5.1783 1.6205 22 14 -5.9028 7.6188 2.8706 23 1 -4.9533 8.7357 2.6340 24 1 -7.0650 7.7544 1.9561 25 1 -6.3739 7.6594 4.2783 26 6 -2.0941 3.9529 3.7611 27 6 -0.5103 3.5783 1.8033 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 2.6332 1.1979 2.0748 32 1 3.7847 0.4301 0.9555 33 1 3.7029 2.2046 1.0696 34 1 1.9908 1.5165 -2.1426 35 1 3.2904 2.4443 -1.3558 36 1 4.4743 0.3328 -0.8206 37 1 3.1751 -0.5953 -1.6073 38 1 6.0786 -0.5301 -2.4545 39 1 4.7788 -1.4578 -3.2407 40 1 5.7302 -0.2856 -4.1830 41 1 0.0356 0.4954 2.0074 42 1 1.3783 1.3202 2.8444 43 1 -1.2026 1.0700 3.8945 44 1 -0.0581 2.3696 4.3598 45 1 -2.4233 1.9315 1.1265 46 1 -3.0762 1.4666 2.7305 47 1 -3.6743 3.8945 1.0531 48 1 -4.6992 3.0853 2.2690 49 1 -6.2849 5.4234 1.1042 50 1 -2.3792 3.4729 4.6974 51 1 -1.3981 4.7704 3.9486 52 1 0.0598 4.3756 2.2802 53 1 -1.0598 3.9640 0.9446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733295018.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:33 Heat of formation + Delta-G solvation = -40.990009 kcal Electronic energy + Delta-G solvation = -31052.771981 eV Core-core repulsion = 27118.488314 eV Total energy + Delta-G solvation = -3934.283667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.10497 -40.28538 -38.88367 -37.36122 -37.05018 -34.47539 -32.79326 -32.11316 -30.72945 -30.30370 -29.57178 -27.47391 -27.21859 -26.28424 -25.20582 -23.64929 -22.76185 -22.16227 -21.75976 -20.29118 -19.24115 -18.70834 -17.90977 -17.58644 -17.20419 -16.93043 -16.77545 -16.26586 -16.07664 -15.93088 -15.63875 -15.44975 -14.84806 -14.77624 -14.46391 -14.43191 -14.17602 -13.86292 -13.83578 -13.50138 -13.36778 -13.15821 -13.09538 -12.94630 -12.84561 -12.70822 -12.60840 -12.48747 -12.42056 -12.11395 -12.04364 -11.89936 -11.85957 -11.64024 -11.52912 -11.44048 -11.16429 -10.76941 -10.70248 -10.53510 -10.20786 -9.58364 -8.89525 -7.85388 -5.20559 1.25648 1.42677 1.46697 1.52568 1.55764 1.88611 2.48433 2.86834 3.28010 3.35094 3.51321 3.62493 3.67669 3.72808 3.81180 3.92470 4.12753 4.22907 4.24068 4.26925 4.30102 4.37602 4.43831 4.49766 4.57803 4.58577 4.60090 4.60869 4.68908 4.77218 4.82364 4.89353 4.92118 4.92795 4.97504 4.98927 5.02278 5.04867 5.08023 5.16532 5.24740 5.33829 5.38429 5.41733 5.44770 5.58009 5.65509 5.75669 5.76042 6.18667 6.28903 6.53616 7.09166 7.09685 7.77656 8.41806 9.24811 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.002613 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.582871 B =10713.559145 C =11160.347268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.142 4.142 3 C -0.034 4.034 4 C -0.149 4.149 5 C -0.088 4.088 6 C 0.067 3.933 7 O -0.427 6.427 8 C 0.026 3.974 9 C 0.528 3.472 10 O -0.597 6.597 11 N -0.607 5.607 12 C 0.083 3.917 13 C -0.107 4.107 14 C -0.070 4.070 15 C -0.109 4.109 16 C 0.188 3.812 17 N -0.628 5.628 18 C -0.239 4.239 19 H 0.085 0.915 20 C -0.072 4.072 21 N -0.954 5.954 22 Si 0.978 3.022 23 H -0.280 1.280 24 H -0.297 1.297 25 H -0.272 1.272 26 C 0.147 3.853 27 C 0.133 3.867 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.161 0.839 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.088 0.912 47 H -0.006 1.006 48 H 0.007 0.993 49 H 0.244 0.756 50 H 0.044 0.956 51 H 0.042 0.958 52 H 0.063 0.937 53 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.650 -19.815 1.548 30.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.160 4.160 3 C -0.037 4.037 4 C -0.205 4.205 5 C -0.127 4.127 6 C -0.009 4.009 7 O -0.347 6.347 8 C -0.070 4.070 9 C 0.318 3.682 10 O -0.477 6.477 11 N -0.339 5.339 12 C -0.037 4.037 13 C -0.144 4.144 14 C -0.072 4.072 15 C -0.147 4.147 16 C 0.063 3.937 17 N -0.354 5.354 18 C -0.368 4.368 19 H 0.102 0.898 20 C -0.264 4.264 21 N -0.603 5.603 22 Si 0.806 3.194 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.198 1.198 26 C 0.022 3.978 27 C 0.010 3.990 28 H 0.086 0.914 29 H 0.148 0.852 30 H 0.179 0.821 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.012 0.988 48 H 0.025 0.975 49 H 0.054 0.946 50 H 0.062 0.938 51 H 0.060 0.940 52 H 0.081 0.919 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 22.424 -19.094 0.874 29.465 hybrid contribution -1.337 1.606 -0.507 2.150 sum 21.087 -17.488 0.367 27.398 Atomic orbital electron populations 1.24149 0.96694 1.02449 0.99415 1.22852 0.95287 0.96728 1.01147 1.19816 0.94918 0.91325 0.97668 1.22184 0.97208 1.03997 0.97156 1.21195 0.97782 0.99003 0.94671 1.22658 0.95144 0.97592 0.85483 1.87854 1.59019 1.49785 1.38006 1.22926 0.91814 0.90499 1.01777 1.20858 0.80598 0.87151 0.79549 1.90708 1.68344 1.42847 1.45833 1.48696 1.43610 1.21622 1.20000 1.22998 1.01646 0.91482 0.87601 1.22481 0.96467 0.98384 0.97109 1.21450 0.94067 0.96347 0.95329 1.22453 0.94740 0.97373 1.00142 1.20908 0.94254 0.87660 0.90871 1.44895 1.30914 1.18531 1.41081 1.19440 1.06944 0.94714 1.15674 0.89751 1.25684 0.99806 1.02146 0.98802 1.70213 1.25919 1.37863 1.26342 0.85158 0.77523 0.79292 0.77424 1.20592 1.22333 1.19775 1.21459 0.87627 0.94657 0.94042 1.21725 0.90676 0.89860 0.96732 0.91430 0.85228 0.82115 0.89487 0.87886 0.92677 0.93410 0.92494 0.90563 0.91119 0.92582 0.92819 0.89196 0.88539 0.87713 0.87519 0.88535 0.92229 0.89364 0.98777 0.97523 0.94650 0.93831 0.94015 0.91890 0.95038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.52 10.93 67.78 0.74 -2.78 16 2 C -0.14 -2.10 6.85 25.64 0.18 -1.92 16 3 C -0.03 -0.68 0.51 -53.67 -0.03 -0.70 16 4 C -0.15 -1.88 7.88 71.98 0.57 -1.31 16 5 C -0.09 -2.03 3.92 30.60 0.12 -1.91 16 6 C 0.07 1.04 5.34 71.98 0.38 1.43 16 7 O -0.43 -8.62 10.70 -148.98 -1.59 -10.21 16 8 C 0.03 0.30 11.01 113.37 1.25 1.55 16 9 C 0.53 16.22 5.12 87.66 0.45 16.67 16 10 O -0.60 -25.27 16.24 -3.04 -0.05 -25.32 16 11 N -0.61 -16.82 2.55 -813.03 -2.07 -18.89 16 12 C 0.08 1.46 5.28 86.82 0.46 1.92 16 13 C -0.11 -2.05 5.97 31.26 0.19 -1.87 16 14 C -0.07 -2.22 0.62 -51.87 -0.03 -2.25 16 15 C -0.11 -3.95 5.92 31.27 0.19 -3.76 16 16 C 0.19 9.66 5.38 86.82 0.47 10.13 16 17 N -0.63 -32.69 3.41 -693.65 -2.37 -35.06 16 18 C -0.24 -13.70 10.28 84.03 0.86 -12.84 16 19 H 0.08 4.58 7.83 -2.91 -0.02 4.55 16 20 C -0.07 -4.25 5.49 84.86 0.47 -3.79 16 21 N -0.95 -60.16 10.30 21.65 0.22 -59.93 16 22 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 C 0.15 5.70 6.28 86.15 0.54 6.24 16 27 C 0.13 4.70 5.89 86.22 0.51 5.21 16 28 H 0.07 1.83 5.70 -2.91 -0.02 1.82 16 29 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.16 1.15 7.42 -2.91 -0.02 1.12 16 31 H 0.09 0.89 4.53 -2.39 -0.01 0.88 16 32 H 0.10 0.65 6.60 -2.39 -0.02 0.64 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 1.37 8.09 -2.39 -0.02 1.35 16 35 H 0.06 1.53 8.10 -2.39 -0.02 1.52 16 36 H 0.08 0.81 6.50 -2.39 -0.02 0.79 16 37 H 0.07 0.82 6.83 -2.39 -0.02 0.80 16 38 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.46 4.84 -2.39 -0.01 1.45 16 42 H 0.11 1.23 5.26 -2.39 -0.01 1.21 16 43 H 0.11 1.65 7.78 -2.38 -0.02 1.63 16 44 H 0.10 1.55 8.08 -2.39 -0.02 1.53 16 45 H 0.06 2.15 8.01 -2.38 -0.02 2.13 16 46 H 0.09 2.73 7.82 -2.39 -0.02 2.71 16 47 H -0.01 -0.37 7.39 -2.39 -0.02 -0.38 16 48 H 0.01 0.38 7.49 -2.38 -0.02 0.36 16 49 H 0.24 15.08 8.31 -92.70 -0.77 14.31 16 50 H 0.04 1.56 8.07 -2.39 -0.02 1.54 16 51 H 0.04 1.60 7.80 -2.39 -0.02 1.58 16 52 H 0.06 2.23 7.85 -2.39 -0.02 2.21 16 53 H 0.03 1.43 7.91 -2.39 -0.02 1.41 16 Total: -1.00 -82.90 395.58 4.35 -78.56 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.88 Total: 11.27 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 7.30 Total: 10.01 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -4.22 Total: -113.88 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.64 Total: -35.53 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -82.90 4.35 -78.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733295018.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.568 kcal (2) G-P(sol) polarization free energy of solvation -82.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds