Wall clock time and date at job start Tue Mar 31 2020 20:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99868 * 2 1 4 4 C 1.52999 * 109.47079 * 240.00075 * 3 2 1 5 5 C 1.53001 * 109.47031 * 120.00414 * 3 2 1 6 6 C 1.53001 * 109.47356 * 60.00019 * 5 3 2 7 7 O 1.42895 * 109.47223 * 179.97438 * 6 5 3 8 8 C 1.42904 * 113.99933 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47433 * 0.02562 * 3 2 1 10 10 O 1.21281 * 120.00283 * 119.99910 * 9 3 2 11 11 N 1.34778 * 119.99944 * 299.99812 * 9 3 2 12 12 C 1.48240 * 127.00666 * 359.97438 * 11 9 3 13 13 C 1.55221 * 103.42293 * 141.46492 * 12 11 9 14 14 C 1.53389 * 102.51285 * 36.32747 * 13 12 11 15 15 C 1.53906 * 111.12993 * 100.38092 * 14 13 12 16 16 C 1.55133 * 101.45195 * 154.63278 * 15 14 13 17 17 N 1.47544 * 105.06547 * 324.19030 * 16 15 14 18 18 C 1.36936 * 125.67279 * 203.93908 * 17 16 15 19 19 H 1.08003 * 119.99538 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99908 * 0.02598 * 18 17 16 21 21 N 1.31618 * 120.00498 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99772 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47086 * 90.00342 * 22 20 18 24 24 H 1.48501 * 109.47162 * 209.99869 * 22 20 18 25 25 H 1.48496 * 109.47102 * 330.00075 * 22 20 18 26 26 C 1.47602 * 108.51853 * 23.94003 * 17 16 15 27 27 C 1.47837 * 127.00872 * 179.97438 * 11 9 3 28 28 H 1.08000 * 119.99803 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99939 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99803 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47282 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47654 * 299.99922 * 4 3 2 33 33 H 1.09000 * 109.47080 * 60.00238 * 4 3 2 34 34 H 1.09006 * 109.47103 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47271 * 299.99306 * 5 3 2 36 36 H 1.09002 * 109.46603 * 300.00370 * 6 5 3 37 37 H 1.09002 * 109.46898 * 59.99860 * 6 5 3 38 38 H 1.09002 * 109.46761 * 180.02562 * 8 7 6 39 39 H 1.08990 * 109.46951 * 300.00229 * 8 7 6 40 40 H 1.08998 * 109.46469 * 60.00560 * 8 7 6 41 41 H 1.09000 * 110.62523 * 259.94164 * 12 11 9 42 42 H 1.08992 * 110.63237 * 22.81758 * 12 11 9 43 43 H 1.08999 * 110.79963 * 278.07442 * 13 12 11 44 44 H 1.08995 * 110.80270 * 154.58752 * 13 12 11 45 45 H 1.08995 * 111.02970 * 36.58342 * 15 14 13 46 46 H 1.09005 * 111.05627 * 272.69035 * 15 14 13 47 47 H 1.09002 * 110.34265 * 83.11992 * 16 15 14 48 48 H 1.09000 * 110.33865 * 205.26730 * 16 15 14 49 49 H 0.97000 * 120.00827 * 179.97438 * 21 20 18 50 50 H 1.08994 * 109.94527 * 238.67172 * 26 17 16 51 51 H 1.08999 * 109.96353 * 117.41767 * 26 17 16 52 52 H 1.09001 * 110.02825 * 85.89001 * 27 11 9 53 53 H 1.09004 * 110.07710 * 324.48094 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2492 5 6 2.9432 1.3861 1.2492 6 6 3.9375 0.2232 1.2491 7 8 4.7594 0.2992 2.4155 8 6 5.7277 -0.7472 2.5134 9 6 1.0842 2.4505 0.0006 10 8 1.0897 3.2525 0.9104 11 7 0.2024 2.5838 -1.0099 12 6 0.0600 1.7008 -2.1921 13 6 -1.4756 1.6328 -2.4081 14 6 -1.9264 3.0517 -2.0388 15 6 -2.1637 3.9039 -3.2983 16 6 -3.1838 4.9491 -2.7753 17 7 -4.0358 4.2105 -1.8237 18 6 -5.3133 4.5499 -1.4659 19 1 -5.8554 3.9412 -0.7573 20 6 -5.9115 5.6763 -2.0139 21 7 -5.2507 6.4184 -2.8771 22 14 -7.6544 6.1388 -1.5264 23 1 -7.6158 7.0388 -0.3458 24 1 -8.3167 6.8355 -2.6584 25 1 -8.4162 4.9101 -1.1875 26 6 -3.2794 3.0459 -1.3235 27 6 -0.8201 3.6402 -1.1652 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.4877 2.3303 -1.2495 32 1 3.6515 0.5577 -1.2493 33 1 2.3164 1.3284 -2.1392 34 1 3.4885 2.3299 1.2490 35 1 2.3166 1.3284 2.1392 36 1 3.3924 -0.7208 1.2491 37 1 4.5641 0.2810 0.3591 38 1 6.3107 -0.6186 3.4255 39 1 5.2196 -1.7110 2.5403 40 1 6.3912 -0.7101 1.6495 41 1 0.5508 2.1399 -3.0606 42 1 0.4651 0.7108 -1.9831 43 1 -1.9279 0.8976 -1.7426 44 1 -1.7106 1.4106 -3.4490 45 1 -2.5940 3.3047 -4.1006 46 1 -1.2420 4.3860 -3.6244 47 1 -2.6660 5.7629 -2.2676 48 1 -3.7837 5.3377 -3.5982 49 1 -5.6688 7.2052 -3.2603 50 1 -3.8179 2.1265 -1.5529 51 1 -3.1317 3.1326 -0.2470 52 1 -0.3843 4.5128 -1.6520 53 1 -1.2218 3.9183 -0.1908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733295022.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:37 Heat of formation + Delta-G solvation = -36.318690 kcal Electronic energy + Delta-G solvation = -30893.224286 eV Core-core repulsion = 26959.143183 eV Total energy + Delta-G solvation = -3934.081104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.14840 -40.28072 -38.88840 -37.43424 -37.03646 -34.51521 -32.74064 -32.10152 -30.67912 -30.21843 -29.48586 -27.52230 -27.22459 -26.33627 -25.14983 -23.63312 -22.82843 -22.21638 -21.75143 -20.20117 -19.33246 -18.71153 -18.03399 -17.60000 -17.17193 -16.85598 -16.84560 -16.27317 -16.02328 -15.75172 -15.62596 -15.54522 -14.94720 -14.78156 -14.55538 -14.27452 -14.10676 -13.87432 -13.70357 -13.39053 -13.37464 -13.15699 -13.00150 -12.90817 -12.81713 -12.72580 -12.64668 -12.54207 -12.48787 -12.18715 -12.02385 -11.91528 -11.82273 -11.62447 -11.52596 -11.45472 -11.15259 -10.76863 -10.74472 -10.52687 -10.18269 -9.72041 -8.89578 -7.78514 -5.22653 1.27558 1.44156 1.46398 1.52979 1.54912 1.83130 2.47876 2.86009 3.25602 3.32423 3.57766 3.59506 3.63390 3.68996 3.82017 3.92775 4.14139 4.22986 4.24213 4.26769 4.29424 4.38733 4.42780 4.51049 4.58340 4.58956 4.59914 4.66590 4.72647 4.77641 4.79412 4.85681 4.89530 4.89815 4.94377 4.96445 5.03714 5.05816 5.06997 5.14965 5.20751 5.30078 5.32280 5.41499 5.44730 5.60477 5.64375 5.74795 5.82501 6.28729 6.30439 6.51677 7.05551 7.09939 7.76718 8.41233 9.23062 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026660 B = 0.002417 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.007510 B =11583.540930 C =11807.929742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C -0.033 4.033 4 C -0.146 4.146 5 C -0.088 4.088 6 C 0.066 3.934 7 O -0.426 6.426 8 C 0.026 3.974 9 C 0.533 3.467 10 O -0.593 6.593 11 N -0.611 5.611 12 C 0.090 3.910 13 C -0.110 4.110 14 C -0.069 4.069 15 C -0.111 4.111 16 C 0.152 3.848 17 N -0.626 5.626 18 C -0.238 4.238 19 H 0.077 0.923 20 C -0.068 4.068 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.291 1.291 24 H -0.290 1.290 25 H -0.268 1.268 26 C 0.147 3.853 27 C 0.129 3.871 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.083 0.917 47 H -0.023 1.023 48 H 0.073 0.927 49 H 0.247 0.753 50 H 0.039 0.961 51 H 0.004 0.996 52 H 0.062 0.938 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.699 -20.818 -0.742 30.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.167 4.167 3 C -0.036 4.036 4 C -0.203 4.203 5 C -0.127 4.127 6 C -0.010 4.010 7 O -0.346 6.346 8 C -0.070 4.070 9 C 0.323 3.677 10 O -0.473 6.473 11 N -0.344 5.344 12 C -0.030 4.030 13 C -0.149 4.149 14 C -0.070 4.070 15 C -0.150 4.150 16 C 0.027 3.973 17 N -0.353 5.353 18 C -0.367 4.367 19 H 0.095 0.905 20 C -0.261 4.261 21 N -0.598 5.598 22 Si 0.808 3.192 23 H -0.219 1.219 24 H -0.216 1.216 25 H -0.193 1.193 26 C 0.022 3.978 27 C 0.006 3.994 28 H 0.102 0.898 29 H 0.145 0.855 30 H 0.175 0.825 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.138 0.862 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.100 0.900 46 H 0.102 0.898 47 H -0.006 1.006 48 H 0.091 0.909 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.022 0.978 52 H 0.080 0.920 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 21.597 -20.117 -0.093 29.515 hybrid contribution -1.375 1.277 0.689 1.999 sum 20.222 -18.840 0.596 27.645 Atomic orbital electron populations 1.24513 0.96729 1.03327 0.98651 1.22831 0.95472 0.96639 1.01720 1.19800 0.94104 0.91172 0.98570 1.22085 0.99666 1.03851 0.94664 1.21180 0.96409 0.99070 0.96008 1.22684 0.92286 0.97901 0.88158 1.87851 1.50310 1.51625 1.44787 1.22927 0.91258 0.89908 1.02937 1.20839 0.80629 0.86445 0.79770 1.90700 1.72320 1.46749 1.37575 1.49092 1.33311 1.28932 1.23055 1.23277 0.96554 0.96255 0.86943 1.22688 0.94732 0.93475 1.03957 1.21392 0.92590 0.97624 0.95415 1.22848 0.99121 0.97256 0.95737 1.21794 0.90723 0.91529 0.93246 1.44990 1.12218 1.27857 1.50193 1.19425 0.89496 1.07465 1.20335 0.90498 1.25623 1.02598 0.97803 1.00043 1.70051 1.37435 1.18093 1.34181 0.85063 0.79474 0.77993 0.76712 1.21872 1.21615 1.19281 1.21441 0.91171 0.90417 0.94791 1.21758 0.88328 0.90685 0.98627 0.89818 0.85477 0.82521 0.92647 0.88019 0.89911 0.92391 0.93122 0.91069 0.90670 0.89172 0.92809 0.92646 0.88871 0.86212 0.90031 0.87380 0.90018 0.89801 1.00552 0.90872 0.94345 0.94312 0.97810 0.92024 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.29 10.96 67.78 0.74 -2.55 16 2 C -0.15 -2.08 6.92 25.64 0.18 -1.90 16 3 C -0.03 -0.63 0.51 -53.68 -0.03 -0.66 16 4 C -0.15 -1.80 7.90 71.98 0.57 -1.23 16 5 C -0.09 -1.92 3.92 30.59 0.12 -1.80 16 6 C 0.07 0.96 5.33 71.98 0.38 1.34 16 7 O -0.43 -8.20 10.70 -148.98 -1.59 -9.80 16 8 C 0.03 0.28 11.01 113.37 1.25 1.53 16 9 C 0.53 15.61 5.47 87.66 0.48 16.09 16 10 O -0.59 -23.84 16.33 -3.03 -0.05 -23.89 16 11 N -0.61 -16.29 2.18 -810.02 -1.77 -18.06 16 12 C 0.09 1.57 4.11 86.81 0.36 1.93 16 13 C -0.11 -2.32 5.74 31.49 0.18 -2.14 16 14 C -0.07 -2.20 0.73 -51.81 -0.04 -2.23 16 15 C -0.11 -3.83 5.92 31.63 0.19 -3.64 16 16 C 0.15 7.53 5.82 86.91 0.51 8.03 16 17 N -0.63 -32.94 3.42 -692.23 -2.37 -35.31 16 18 C -0.24 -13.73 10.29 84.03 0.86 -12.86 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 21 N -0.95 -57.44 10.09 21.65 0.22 -57.22 16 22 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C 0.15 6.14 6.40 86.19 0.55 6.69 16 27 C 0.13 4.39 6.24 86.04 0.54 4.93 16 28 H 0.08 2.02 4.34 -2.91 -0.01 2.00 16 29 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.16 1.12 7.00 -2.91 -0.02 1.10 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.65 6.43 -2.39 -0.02 0.64 16 33 H 0.08 0.84 5.28 -2.39 -0.01 0.83 16 34 H 0.06 1.49 8.10 -2.38 -0.02 1.47 16 35 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 36 H 0.07 0.76 6.62 -2.39 -0.02 0.74 16 37 H 0.08 0.76 6.43 -2.39 -0.02 0.74 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.43 8.14 -2.39 -0.02 0.42 16 40 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.09 1.31 7.95 -2.39 -0.02 1.29 16 42 H 0.12 1.47 4.14 -2.39 -0.01 1.46 16 43 H 0.08 1.67 7.05 -2.39 -0.02 1.65 16 44 H 0.11 1.84 7.59 -2.39 -0.02 1.83 16 45 H 0.08 2.58 7.75 -2.39 -0.02 2.56 16 46 H 0.08 2.50 7.68 -2.38 -0.02 2.48 16 47 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 48 H 0.07 4.11 5.88 -2.39 -0.01 4.10 16 49 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 50 H 0.04 1.54 7.75 -2.39 -0.02 1.52 16 51 H 0.00 0.18 7.38 -2.39 -0.02 0.16 16 52 H 0.06 2.16 7.46 -2.39 -0.02 2.14 16 53 H 0.04 1.62 7.24 -2.38 -0.02 1.61 16 Total: -1.00 -79.36 391.39 4.66 -74.69 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.89 Total: 12.77 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 7.30 Total: 8.03 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -3.92 Total: -110.59 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.64 Total: -33.69 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -79.36 4.66 -74.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733295022.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.375 kcal (2) G-P(sol) polarization free energy of solvation -79.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds