Wall clock time and date at job start Tue Mar 31 2020 19:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00230 * 2 1 4 4 C 1.50700 * 119.99505 * 180.02562 * 2 1 3 5 5 H 1.09003 * 110.41974 * 128.58111 * 4 2 1 6 6 O 1.44427 * 110.37770 * 6.26991 * 4 2 1 7 7 C 1.44420 * 105.27606 * 200.66096 * 6 4 2 8 8 C 1.54474 * 104.80779 * 40.50892 * 7 6 4 9 9 C 1.54485 * 110.37133 * 250.88978 * 4 2 1 10 10 H 1.09000 * 110.62388 * 261.51511 * 9 4 2 11 11 C 1.50701 * 110.50989 * 24.16280 * 9 4 2 12 12 O 1.21279 * 119.99659 * 79.25798 * 11 9 4 13 13 N 1.34773 * 120.00055 * 259.25675 * 11 9 4 14 14 C 1.46504 * 119.99890 * 179.97438 * 13 11 9 15 15 C 1.52995 * 109.47179 * 179.97438 * 14 13 11 16 16 C 1.53009 * 109.46960 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.46590 * 184.34250 * 16 15 14 18 18 H 1.08995 * 109.87353 * 304.28509 * 17 16 15 19 19 C 1.54322 * 109.88382 * 65.30769 * 17 16 15 20 20 C 1.55151 * 102.94540 * 141.60462 * 19 17 16 21 21 C 1.54910 * 101.58309 * 324.49814 * 20 19 17 22 22 N 1.47190 * 109.78763 * 183.08540 * 17 16 15 23 23 C 1.36935 * 125.73563 * 61.65392 * 22 17 16 24 24 H 1.08004 * 119.99964 * 11.46856 * 23 22 17 25 25 C 1.38813 * 119.99824 * 191.46767 * 23 22 17 26 26 N 1.31617 * 119.99911 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99979 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46735 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47021 * 120.00104 * 27 25 23 30 30 H 1.48495 * 109.47201 * 240.00448 * 27 25 23 31 31 H 1.07999 * 119.99893 * 359.97438 * 1 2 3 32 32 H 1.08002 * 120.00396 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47117 * 273.74181 * 3 2 1 34 34 H 1.08993 * 109.46555 * 33.74554 * 3 2 1 35 35 H 1.09003 * 109.46710 * 153.73999 * 3 2 1 36 36 H 1.09000 * 110.37009 * 281.67750 * 7 6 4 37 37 H 1.09005 * 110.37464 * 159.34423 * 7 6 4 38 38 H 1.09000 * 110.51915 * 217.37897 * 8 7 6 39 39 H 1.09007 * 110.51155 * 94.66834 * 8 7 6 40 40 H 0.96996 * 120.00535 * 0.02562 * 13 11 9 41 41 H 1.09005 * 109.46786 * 60.00240 * 14 13 11 42 42 H 1.09002 * 109.47102 * 300.00942 * 14 13 11 43 43 H 1.09002 * 109.46564 * 60.00654 * 15 14 13 44 44 H 1.08996 * 109.47518 * 300.00384 * 15 14 13 45 45 H 1.08998 * 109.46716 * 64.34306 * 16 15 14 46 46 H 1.08993 * 109.46960 * 304.34122 * 16 15 14 47 47 H 1.08998 * 110.72286 * 23.23941 * 19 17 16 48 48 H 1.09002 * 110.71518 * 259.97214 * 19 17 16 49 49 H 1.08999 * 111.00856 * 206.41968 * 20 19 17 50 50 H 1.09004 * 111.03877 * 82.58415 * 20 19 17 51 51 H 1.08997 * 110.36754 * 155.84650 * 21 20 19 52 52 H 1.09001 * 110.36565 * 278.05833 * 21 20 19 53 53 H 0.97006 * 119.99521 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0633 -1.3052 -0.0006 5 1 2.8052 -1.3157 -0.7991 6 8 1.1492 -2.4134 -0.1489 7 6 1.8636 -3.5653 0.3498 8 6 2.6084 -3.0555 1.6034 9 6 2.7428 -1.5345 1.3677 10 1 3.7931 -1.2455 1.3281 11 6 2.0258 -0.7671 2.4485 12 8 0.9963 -1.2019 2.9197 13 7 2.5286 0.4022 2.8915 14 6 1.8312 1.1485 3.9418 15 6 2.6066 2.4289 4.2582 16 6 1.8786 3.2079 5.3556 17 6 2.5938 4.5389 5.5961 18 1 3.6423 4.3587 5.8328 19 6 2.4846 5.4280 4.3395 20 6 2.2815 6.8466 4.9339 21 6 1.4204 6.5395 6.1845 22 7 1.9433 5.2616 6.7012 23 6 1.8425 4.8225 7.9943 24 1 2.4147 3.9663 8.3200 25 6 1.0049 5.4777 8.8865 26 7 0.3073 6.5208 8.4893 27 14 0.8669 4.8783 10.6503 28 1 1.7465 3.6973 10.8419 29 1 1.2852 5.9619 11.5755 30 1 -0.5403 4.4995 10.9357 31 1 -0.5400 0.9353 0.0004 32 1 -0.5401 -0.9353 -0.0004 33 1 2.1871 1.6532 -1.0254 34 1 1.5051 2.0469 0.5709 35 1 3.0433 1.1588 0.4547 36 1 2.5747 -3.9224 -0.3950 37 1 1.1651 -4.3576 0.6193 38 1 3.5922 -3.5188 1.6781 39 1 2.0232 -3.2526 2.5018 40 1 3.3518 0.7502 2.5144 41 1 1.7630 0.5342 4.8396 42 1 0.8285 1.4054 3.6003 43 1 2.6752 3.0433 3.3605 44 1 3.6091 2.1716 4.5999 45 1 1.8780 2.6242 6.2761 46 1 0.8512 3.3983 5.0454 47 1 1.6260 5.1369 3.7344 48 1 3.4031 5.3829 3.7543 49 1 1.7432 7.4890 4.2370 50 1 3.2352 7.2928 5.2163 51 1 1.5386 7.3266 6.9291 52 1 0.3715 6.4356 5.9066 53 1 -0.2777 6.9789 9.1130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753035825.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:27 Heat of formation + Delta-G solvation = -73.146478 kcal Electronic energy + Delta-G solvation = -30039.034741 eV Core-core repulsion = 26103.356665 eV Total energy + Delta-G solvation = -3935.678076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.70004 -39.66555 -39.28750 -36.66879 -35.99215 -34.67616 -33.76137 -33.10091 -31.24484 -30.01837 -29.17019 -28.05421 -26.68115 -25.89243 -24.53564 -23.09737 -22.60918 -21.85457 -21.27273 -20.68474 -19.59224 -18.70390 -18.22739 -17.47443 -17.03227 -16.98246 -16.64444 -16.51033 -16.15561 -15.94984 -15.63558 -15.47672 -14.91631 -14.56844 -14.40838 -14.09125 -13.96549 -13.88331 -13.68267 -13.58997 -13.22417 -13.06221 -12.98442 -12.89130 -12.75916 -12.65087 -12.58585 -12.25867 -12.20833 -12.14166 -11.96332 -11.84771 -11.82518 -11.66328 -11.50642 -11.30638 -11.12837 -10.91487 -10.69124 -10.65525 -10.07719 -9.92387 -8.79219 -7.83780 -5.19269 1.23805 1.43394 1.44614 1.54219 1.64271 2.19219 2.49668 2.87388 3.33679 3.38552 3.67356 3.72386 3.83868 3.97300 4.01404 4.02264 4.18971 4.19500 4.25357 4.27794 4.29437 4.36069 4.38386 4.45400 4.59910 4.63771 4.67050 4.79462 4.82317 4.84091 4.85746 4.87672 4.91165 5.02049 5.02775 5.05126 5.12484 5.15294 5.17968 5.25248 5.35088 5.47597 5.51755 5.53818 5.59885 5.69954 5.71861 5.72710 5.81868 6.06594 6.28467 6.62796 7.13441 7.33545 7.83520 8.49834 9.26745 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017233 B = 0.002351 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.438981 B =11904.713847 C =12848.349335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.146 4.146 3 C -0.110 4.110 4 C 0.126 3.874 5 H 0.118 0.882 6 O -0.393 6.393 7 C 0.043 3.957 8 C -0.141 4.141 9 C -0.133 4.133 10 H 0.146 0.854 11 C 0.521 3.479 12 O -0.584 6.584 13 N -0.710 5.710 14 C 0.129 3.871 15 C -0.106 4.106 16 C -0.112 4.112 17 C 0.152 3.848 18 H 0.038 0.962 19 C -0.110 4.110 20 C -0.137 4.137 21 C 0.171 3.829 22 N -0.620 5.620 23 C -0.226 4.226 24 H 0.077 0.923 25 C -0.069 4.069 26 N -0.951 5.951 27 Si 0.970 3.030 28 H -0.266 1.266 29 H -0.292 1.292 30 H -0.296 1.296 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.059 0.941 40 H 0.416 0.584 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.034 0.966 46 H 0.037 0.963 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.079 0.921 50 H 0.064 0.936 51 H 0.035 0.965 52 H -0.014 1.014 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.223 -15.301 -22.721 29.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.146 4.146 3 C -0.167 4.167 4 C 0.068 3.932 5 H 0.136 0.864 6 O -0.313 6.313 7 C -0.033 4.033 8 C -0.179 4.179 9 C -0.154 4.154 10 H 0.164 0.836 11 C 0.308 3.692 12 O -0.463 6.463 13 N -0.362 5.362 14 C 0.004 3.996 15 C -0.144 4.144 16 C -0.152 4.152 17 C 0.046 3.954 18 H 0.056 0.944 19 C -0.148 4.148 20 C -0.176 4.176 21 C 0.046 3.954 22 N -0.345 5.345 23 C -0.356 4.356 24 H 0.095 0.905 25 C -0.262 4.262 26 N -0.601 5.601 27 Si 0.799 3.201 28 H -0.190 1.190 29 H -0.219 1.219 30 H -0.224 1.224 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.078 0.922 40 H 0.254 0.746 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.088 0.912 48 H 0.118 0.882 49 H 0.098 0.902 50 H 0.083 0.917 51 H 0.054 0.946 52 H 0.004 0.996 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.193 -15.543 -22.264 29.369 hybrid contribution -0.755 0.052 1.657 1.822 sum 10.438 -15.491 -20.606 27.813 Atomic orbital electron populations 1.23659 0.96518 1.01313 1.00312 1.21870 0.95568 0.95587 1.01605 1.20845 1.00307 0.92226 1.03276 1.21897 0.90848 0.85463 0.94990 0.86432 1.89147 1.39581 1.18038 1.84524 1.23578 0.96265 0.88817 0.94610 1.22978 1.03157 0.92286 0.99487 1.22846 1.02634 0.96615 0.93314 0.83633 1.20755 0.84670 0.81151 0.82630 1.90699 1.26156 1.69614 1.59836 1.45926 1.28539 1.22007 1.39754 1.21153 0.95781 0.92736 0.89882 1.21628 0.99242 0.94145 0.99423 1.21822 0.98865 0.96982 0.97580 1.21244 0.94724 0.91414 0.88022 0.94422 1.22579 1.02676 0.93753 0.95746 1.22880 0.99910 0.97587 0.97192 1.21267 0.92927 0.88266 0.92957 1.44914 1.66291 1.18290 1.04955 1.19353 1.19007 1.10988 0.86207 0.90499 1.25634 0.98922 0.99204 1.02447 1.70167 1.32044 1.23139 1.34736 0.85119 0.77018 0.77690 0.80246 1.19001 1.21861 1.22377 0.88446 0.89717 0.89829 0.92157 0.89763 0.89072 0.89256 0.86475 0.92196 0.74612 0.93871 0.93684 0.88902 0.89893 0.94672 0.94433 0.91202 0.88213 0.90211 0.91724 0.94622 0.99568 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.27 13.69 67.78 0.93 -3.34 16 2 C -0.15 -2.65 3.80 -16.48 -0.06 -2.72 16 3 C -0.11 -1.32 9.16 71.24 0.65 -0.67 16 4 C 0.13 1.92 3.53 30.35 0.11 2.03 16 5 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16 6 O -0.39 -8.27 9.82 -148.98 -1.46 -9.73 16 7 C 0.04 0.61 7.63 72.48 0.55 1.16 16 8 C -0.14 -1.93 6.59 31.61 0.21 -1.73 16 9 C -0.13 -1.82 3.28 -10.52 -0.03 -1.85 16 10 H 0.15 0.71 8.11 -2.39 -0.02 0.69 16 11 C 0.52 11.66 5.09 87.66 0.45 12.10 16 12 O -0.58 -19.70 15.97 -3.03 -0.05 -19.75 16 13 N -0.71 -12.75 4.69 -463.06 -2.17 -14.92 16 14 C 0.13 3.16 5.67 86.38 0.49 3.65 16 15 C -0.11 -2.35 5.22 30.60 0.16 -2.19 16 16 C -0.11 -3.85 4.69 30.60 0.14 -3.70 16 17 C 0.15 5.71 3.20 45.31 0.14 5.85 16 18 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 19 C -0.11 -3.26 5.45 31.78 0.17 -3.09 16 20 C -0.14 -4.84 7.09 31.98 0.23 -4.61 16 21 C 0.17 8.50 5.46 86.86 0.47 8.97 16 22 N -0.62 -31.39 3.13 -667.86 -2.09 -33.48 16 23 C -0.23 -12.69 9.77 84.03 0.82 -11.87 16 24 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 25 C -0.07 -4.03 5.47 84.86 0.46 -3.56 16 26 N -0.95 -58.49 10.46 21.65 0.23 -58.27 16 27 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 29 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 30 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 31 H 0.10 2.17 8.05 -2.91 -0.02 2.15 16 32 H 0.08 2.36 6.91 -2.91 -0.02 2.34 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 35 H 0.08 0.58 6.86 -2.39 -0.02 0.56 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 1.23 7.06 -2.38 -0.02 1.21 16 40 H 0.42 4.15 7.52 -92.71 -0.70 3.45 16 41 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 1.62 7.28 -2.39 -0.02 1.61 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.03 1.38 7.90 -2.39 -0.02 1.36 16 46 H 0.04 1.43 8.07 -2.39 -0.02 1.41 16 47 H 0.07 1.98 7.79 -2.39 -0.02 1.96 16 48 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 51 H 0.04 2.02 6.71 -2.39 -0.02 2.00 16 52 H -0.01 -0.76 8.12 -2.39 -0.02 -0.78 16 53 H 0.24 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -80.19 412.02 2.55 -77.64 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.17 Total: 15.15 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 5.90 Total: -5.57 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -4.03 Total: -106.67 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -1.51 Total: -29.48 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -80.19 2.55 -77.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753035825.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.493 kcal (2) G-P(sol) polarization free energy of solvation -80.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds