Wall clock time and date at job start Tue Mar 31 2020 20:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 120.00334 * 2 1 4 4 C 1.53001 * 109.47257 * 125.00186 * 3 2 1 5 5 O 1.42897 * 109.47392 * 180.02562 * 4 3 2 6 6 C 1.42894 * 114.00282 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47501 * 180.02562 * 6 5 4 8 8 O 1.21277 * 119.99780 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00173 * 180.02562 * 7 6 5 10 10 C 1.46934 * 120.63024 * 179.97438 * 9 7 6 11 11 C 1.53191 * 108.77642 * 233.62961 * 10 9 7 12 12 C 1.53047 * 109.31053 * 305.36698 * 11 10 9 13 13 C 1.53001 * 109.45814 * 181.38581 * 12 11 10 14 14 H 1.08996 * 110.88803 * 302.39733 * 13 12 11 15 15 C 1.55159 * 111.03830 * 66.30161 * 13 12 11 16 16 C 1.54338 * 103.02244 * 153.39448 * 15 13 12 17 17 N 1.47024 * 107.26010 * 338.14091 * 16 15 13 18 18 C 1.36937 * 125.64167 * 178.84693 * 17 16 15 19 19 H 1.08003 * 120.00130 * 189.75464 * 18 17 16 20 20 C 1.38820 * 120.00182 * 9.75491 * 18 17 16 21 21 N 1.31615 * 119.99875 * 195.14155 * 20 18 17 22 22 Si 1.86789 * 119.99937 * 15.14177 * 20 18 17 23 23 H 1.48508 * 109.47342 * 54.48976 * 22 20 18 24 24 H 1.48500 * 109.47225 * 174.49146 * 22 20 18 25 25 H 1.48499 * 109.47361 * 294.49128 * 22 20 18 26 26 C 1.47421 * 108.70828 * 358.58741 * 17 16 15 27 27 C 1.53037 * 109.52883 * 61.37036 * 12 11 10 28 28 C 1.46930 * 120.63184 * 0.02562 * 9 7 6 29 29 H 1.08000 * 119.99632 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00406 * 180.02562 * 1 2 3 31 31 H 1.08008 * 119.99781 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47073 * 4.99962 * 3 2 1 33 33 H 1.09005 * 109.47167 * 244.99755 * 3 2 1 34 34 H 1.09001 * 109.47261 * 59.99891 * 4 3 2 35 35 H 1.09007 * 109.47091 * 300.00209 * 4 3 2 36 36 H 1.08998 * 109.47438 * 59.99636 * 6 5 4 37 37 H 1.09005 * 109.47475 * 299.99980 * 6 5 4 38 38 H 1.08996 * 109.58227 * 113.84062 * 10 9 7 39 39 H 1.08992 * 109.58292 * 353.41722 * 10 9 7 40 40 H 1.08997 * 109.49713 * 185.41733 * 11 10 9 41 41 H 1.08998 * 109.52505 * 65.33110 * 11 10 9 42 42 H 1.09000 * 109.45821 * 301.35782 * 12 11 10 43 43 H 1.09001 * 110.72227 * 271.95611 * 15 13 12 44 44 H 1.09002 * 110.72039 * 35.22937 * 15 13 12 45 45 H 1.09001 * 109.98951 * 218.66916 * 16 15 13 46 46 H 1.08997 * 109.77846 * 97.49473 * 16 15 13 47 47 H 0.97006 * 120.00193 * 2.97793 * 21 20 18 48 48 H 1.08993 * 110.36637 * 143.19488 * 26 17 16 49 49 H 1.09007 * 110.36086 * 265.40568 * 26 17 16 50 50 H 1.09002 * 109.49428 * 58.58369 * 27 12 11 51 51 H 1.09005 * 109.49821 * 178.67452 * 27 12 11 52 52 H 1.09007 * 109.58262 * 246.15789 * 28 9 7 53 53 H 1.08997 * 109.58553 * 6.43342 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 8 3.7493 2.5707 1.1820 6 6 4.6879 2.6998 2.2516 7 6 5.3792 4.0354 2.1549 8 8 5.0962 4.8011 1.2580 9 7 6.3125 4.3786 3.0645 10 6 6.9955 5.6770 2.9831 11 6 8.5088 5.4393 2.9887 12 6 8.8859 4.6067 4.2162 13 6 10.4011 4.3964 4.2437 14 1 10.7428 3.9111 3.3295 15 6 11.1456 5.7384 4.4725 16 6 12.4651 5.2949 5.1390 17 7 12.2308 3.9697 5.7310 18 6 13.1613 3.2176 6.3971 19 1 12.9408 2.1931 6.6586 20 6 14.3880 3.7718 6.7364 21 7 15.3843 2.9924 7.0998 22 14 14.6246 5.6237 6.6770 23 1 13.5814 6.2828 7.5033 24 1 15.9678 5.9684 7.2082 25 1 14.5126 6.0923 5.2724 26 6 10.8268 3.5875 5.4943 27 6 8.1838 3.2485 4.1484 28 6 6.6673 3.4610 4.1559 29 1 -0.5399 0.9353 0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6214 1.4025 -0.9314 34 1 3.7400 0.5064 1.0920 35 1 2.4773 1.2354 2.1130 36 1 5.4274 1.9019 2.1845 37 1 4.1641 2.6305 3.2051 38 1 6.7187 6.2899 3.8409 39 1 6.7086 6.1835 2.0617 40 1 9.0274 6.3973 3.0257 41 1 8.7969 4.9043 2.0838 42 1 8.5755 5.1311 5.1200 43 1 11.3392 6.2387 3.5236 44 1 10.5781 6.3850 5.1418 45 1 12.7462 6.0043 5.9174 46 1 13.2539 5.2319 4.3894 47 1 15.2750 2.0285 7.0892 48 1 10.7529 2.5180 5.2976 49 1 10.2103 3.8584 6.3515 50 1 8.4746 2.7341 3.2324 51 1 8.4711 2.6469 5.0108 52 1 6.3636 3.8929 5.1096 53 1 6.1617 2.5065 4.0096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754537658.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:44 Heat of formation + Delta-G solvation = -60.339338 kcal Electronic energy + Delta-G solvation = -29158.850591 eV Core-core repulsion = 25223.727874 eV Total energy + Delta-G solvation = -3935.122717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.39261 -40.02926 -38.92454 -37.97329 -35.89611 -35.35293 -33.91641 -32.39658 -31.37743 -30.65627 -29.81305 -28.49818 -26.43788 -24.93963 -24.16805 -23.88317 -22.44067 -22.06496 -20.97016 -20.73505 -20.04121 -19.53375 -18.46043 -17.62687 -17.44128 -17.08514 -16.85337 -16.54697 -16.31010 -15.75007 -15.60614 -15.28224 -15.15042 -14.83950 -14.79045 -14.62347 -14.27416 -14.07381 -14.03792 -13.85605 -13.51796 -13.36476 -13.29302 -12.95976 -12.95101 -12.54744 -12.31991 -12.22827 -12.15857 -12.14962 -11.98342 -11.89286 -11.49848 -11.42682 -11.33456 -11.12136 -10.95991 -10.76748 -10.71533 -10.61753 -10.27487 -9.67795 -9.06666 -8.65228 -5.45470 1.32349 1.40387 1.49334 1.51600 1.71870 1.74224 2.54892 2.82248 3.12446 3.34502 3.49946 3.62096 3.76525 3.82715 3.98309 3.99201 4.10805 4.13898 4.16447 4.21375 4.25618 4.28005 4.30683 4.42754 4.43897 4.45232 4.48164 4.50299 4.58113 4.72859 4.77325 4.83831 4.89137 4.90519 4.93259 4.98135 5.01543 5.04203 5.07417 5.09883 5.16543 5.22397 5.29464 5.37543 5.55143 5.56076 5.61881 5.72652 5.84423 6.06665 6.11552 6.36615 6.83985 7.10954 7.48680 8.12467 8.88185 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.001855 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.907269 B =15086.728132 C =15896.097611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.161 4.161 3 C -0.094 4.094 4 C 0.063 3.937 5 O -0.400 6.400 6 C 0.046 3.954 7 C 0.509 3.491 8 O -0.578 6.578 9 N -0.606 5.606 10 C 0.113 3.887 11 C -0.120 4.120 12 C -0.065 4.065 13 C -0.080 4.080 14 H 0.069 0.931 15 C -0.113 4.113 16 C 0.095 3.905 17 N -0.638 5.638 18 C -0.311 4.311 19 H 0.046 0.954 20 C -0.084 4.084 21 N -0.966 5.966 22 Si 1.113 2.887 23 H -0.284 1.284 24 H -0.314 1.314 25 H -0.254 1.254 26 C 0.138 3.862 27 C -0.131 4.131 28 C 0.106 3.894 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.022 0.978 46 H 0.028 0.972 47 H 0.246 0.754 48 H 0.034 0.966 49 H 0.032 0.968 50 H 0.062 0.938 51 H 0.083 0.917 52 H 0.091 0.909 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.960 -1.071 -10.816 31.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.179 4.179 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.319 6.319 6 C -0.033 4.033 7 C 0.298 3.702 8 O -0.457 6.457 9 N -0.340 5.340 10 C -0.009 4.009 11 C -0.158 4.158 12 C -0.084 4.084 13 C -0.100 4.100 14 H 0.087 0.913 15 C -0.151 4.151 16 C -0.029 4.029 17 N -0.365 5.365 18 C -0.440 4.440 19 H 0.064 0.936 20 C -0.276 4.276 21 N -0.611 5.611 22 Si 0.941 3.059 23 H -0.212 1.212 24 H -0.244 1.244 25 H -0.179 1.179 26 C 0.013 3.987 27 C -0.169 4.169 28 C -0.015 4.015 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.141 0.859 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.039 0.961 46 H 0.045 0.955 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.050 0.950 50 H 0.081 0.919 51 H 0.101 0.899 52 H 0.109 0.891 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -29.035 0.601 -11.105 31.092 hybrid contribution -0.290 -1.983 0.179 2.012 sum -29.325 -1.382 -10.927 31.325 Atomic orbital electron populations 1.24084 0.95916 1.02739 0.99719 1.22827 0.96184 0.97724 1.01120 1.20634 0.97803 0.96435 0.98259 1.22654 0.94241 0.85227 0.99191 1.87950 1.55131 1.39258 1.49566 1.22383 0.93573 0.94659 0.92693 1.20833 0.79672 0.88824 0.80920 1.90690 1.65151 1.54262 1.35627 1.48196 1.38483 1.19031 1.28274 1.21636 0.91793 0.84324 1.03155 1.21894 0.94661 1.01393 0.97835 1.21027 0.91864 0.96523 0.99011 1.22264 0.95278 0.95375 0.97049 0.91277 1.22637 0.93804 0.97433 1.01181 1.22156 0.98961 0.86664 0.95094 1.44982 1.08294 1.18311 1.64956 1.20091 0.96225 0.94380 1.33270 0.93626 1.27122 0.91501 1.10355 0.98618 1.71011 1.32115 1.04521 1.53443 0.83325 0.73328 0.71233 0.77968 1.21205 1.24368 1.17898 1.21798 0.83882 0.97204 0.95812 1.21970 0.94560 0.97216 1.03152 1.22020 0.95457 0.94198 0.89870 0.88513 0.86960 0.85934 0.91469 0.90894 0.91444 0.91598 0.87838 0.87350 0.89681 0.90780 0.89268 0.92553 0.89691 0.88870 0.89484 0.96079 0.95453 0.94489 0.94802 0.95009 0.91945 0.89866 0.89075 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 14.32 67.78 0.97 -0.73 16 2 C -0.16 -1.59 9.52 25.65 0.24 -1.34 16 3 C -0.09 -1.23 6.03 29.85 0.18 -1.05 16 4 C 0.06 0.79 5.92 71.98 0.43 1.21 16 5 O -0.40 -8.00 9.88 -129.94 -1.28 -9.29 16 6 C 0.05 0.66 4.76 71.24 0.34 1.00 16 7 C 0.51 11.01 7.77 87.66 0.68 11.69 16 8 O -0.58 -18.39 15.91 16.01 0.25 -18.13 16 9 N -0.61 -10.19 2.97 -818.99 -2.43 -12.63 16 10 C 0.11 1.95 6.43 86.36 0.56 2.51 16 11 C -0.12 -2.03 5.23 30.67 0.16 -1.87 16 12 C -0.07 -1.19 1.66 -10.77 -0.02 -1.21 16 13 C -0.08 -2.13 2.56 -9.40 -0.02 -2.16 16 14 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 15 C -0.11 -3.15 5.57 31.79 0.18 -2.97 16 16 C 0.10 3.92 4.61 86.73 0.40 4.32 16 17 N -0.64 -30.52 3.33 -691.96 -2.30 -32.83 16 18 C -0.31 -18.23 10.56 84.04 0.89 -17.34 16 19 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16 20 C -0.08 -5.07 5.50 84.86 0.47 -4.60 16 21 N -0.97 -63.20 13.71 21.65 0.30 -62.90 16 22 Si 1.11 54.73 24.52 68.60 1.68 56.41 16 23 H -0.28 -13.12 6.82 99.48 0.68 -12.44 16 24 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 25 H -0.25 -11.05 5.41 99.48 0.54 -10.51 16 26 C 0.14 4.95 5.65 86.86 0.49 5.44 16 27 C -0.13 -2.01 5.18 30.65 0.16 -1.85 16 28 C 0.11 1.17 6.34 86.34 0.55 1.72 16 29 H 0.10 0.87 7.84 -2.91 -0.02 0.85 16 30 H 0.11 0.71 8.06 -2.91 -0.02 0.69 16 31 H 0.12 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.07 0.98 7.79 -2.39 -0.02 0.96 16 33 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.10 1.00 7.69 -2.39 -0.02 0.98 16 37 H 0.11 0.90 7.94 -2.38 -0.02 0.88 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.58 7.00 -2.39 -0.02 1.57 16 40 H 0.09 1.36 7.45 -2.39 -0.02 1.34 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.45 8.11 -2.39 -0.02 1.43 16 43 H 0.09 2.16 8.11 -2.39 -0.02 2.14 16 44 H 0.09 2.10 8.02 -2.39 -0.02 2.08 16 45 H 0.02 0.92 3.89 -2.39 -0.01 0.92 16 46 H 0.03 1.21 6.70 -2.39 -0.02 1.19 16 47 H 0.25 16.15 8.73 -92.70 -0.81 15.34 16 48 H 0.03 1.25 8.01 -2.39 -0.02 1.23 16 49 H 0.03 1.10 8.04 -2.38 -0.02 1.08 16 50 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.08 1.33 7.21 -2.38 -0.02 1.31 16 52 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 53 H 0.11 0.65 5.93 -2.39 -0.01 0.64 16 Total: -1.00 -81.60 405.05 3.48 -78.12 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.62 Total: 8.46 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 6.64 Total: -7.21 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -4.44 Total: -108.36 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -1.03 Total: -27.42 kcal Atomic # 14 Polarization: 54.73 SS G_CDS: 1.68 Total: 56.41 kcal Total: -81.60 3.48 -78.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754537658.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.782 kcal (2) G-P(sol) polarization free energy of solvation -81.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds