Wall clock time and date at job start Tue Mar 31 2020 20:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00287 * 2 1 4 4 C 1.53003 * 109.47216 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47118 * 64.99875 * 4 3 2 6 6 C 1.36940 * 120.00165 * 269.99689 * 5 4 3 7 7 H 1.08001 * 119.99503 * 137.64232 * 6 5 4 8 8 C 1.38807 * 120.00128 * 317.65066 * 6 5 4 9 9 N 1.31617 * 120.00389 * 358.96249 * 8 6 5 10 10 Si 1.86801 * 119.99873 * 178.96271 * 8 6 5 11 11 H 1.48503 * 109.47011 * 59.99829 * 10 8 6 12 12 H 1.48499 * 109.47308 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47338 * 299.99784 * 10 8 6 14 14 C 1.46503 * 120.00043 * 90.00585 * 5 4 3 15 15 C 1.53033 * 109.46331 * 124.35296 * 14 5 4 16 16 C 1.53193 * 109.31399 * 181.38544 * 15 14 5 17 17 N 1.46927 * 108.77406 * 305.36522 * 16 15 14 18 18 C 1.34776 * 120.62486 * 233.58260 * 17 16 15 19 19 O 1.21605 * 120.00373 * 356.41734 * 18 17 16 20 20 C 1.47104 * 119.99461 * 176.41694 * 18 17 16 21 21 C 1.32989 * 119.99982 * 184.27418 * 20 18 17 22 22 C 1.50699 * 120.00360 * 171.95651 * 21 20 18 23 23 C 1.50702 * 120.00073 * 351.95818 * 21 20 18 24 24 C 1.53003 * 117.50169 * 175.44577 * 23 21 20 25 25 C 1.52997 * 60.00239 * 252.51083 * 24 23 21 26 26 C 1.46925 * 118.73924 * 53.86031 * 17 16 15 27 27 C 1.53044 * 109.45832 * 244.41988 * 14 5 4 28 28 H 1.09001 * 109.47222 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47064 * 300.00307 * 1 2 3 30 30 H 1.09008 * 109.47146 * 59.99281 * 1 2 3 31 31 H 1.08999 * 109.47104 * 60.00099 * 3 2 1 32 32 H 1.09000 * 109.46934 * 300.00246 * 3 2 1 33 33 H 1.09001 * 109.46636 * 305.00035 * 4 3 2 34 34 H 1.08996 * 109.47070 * 185.00239 * 4 3 2 35 35 H 0.96990 * 120.00615 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.45887 * 4.37785 * 14 5 4 37 37 H 1.08996 * 109.50100 * 61.43143 * 15 14 5 38 38 H 1.09003 * 109.50035 * 301.33622 * 15 14 5 39 39 H 1.09001 * 109.58560 * 185.57232 * 16 15 14 40 40 H 1.09004 * 109.70195 * 65.22136 * 16 15 14 41 41 H 1.08003 * 120.00484 * 4.27168 * 20 18 17 42 42 H 1.09001 * 109.47348 * 270.00233 * 22 21 20 43 43 H 1.08999 * 109.47037 * 30.00347 * 22 21 20 44 44 H 1.09005 * 109.47547 * 149.99423 * 22 21 20 45 45 H 1.09000 * 115.54977 * 321.16227 * 23 21 20 46 46 H 1.09000 * 117.49651 * 0.02562 * 24 23 21 47 47 H 1.08997 * 117.49530 * 145.01884 * 24 23 21 48 48 H 1.08994 * 117.50082 * 252.50546 * 25 24 23 49 49 H 1.09001 * 117.51344 * 107.47711 * 25 24 23 50 50 H 1.09003 * 109.58732 * 65.92379 * 26 17 16 51 51 H 1.08996 * 109.58691 * 186.35261 * 26 17 16 52 52 H 1.09000 * 109.49853 * 298.56483 * 27 14 5 53 53 H 1.09002 * 109.49226 * 58.66155 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0968 -0.7971 -1.3368 7 1 3.7496 -1.3166 -2.2178 8 6 4.6655 -1.5094 -0.2899 9 7 5.1070 -0.8742 0.7750 10 14 4.8043 -3.3694 -0.3924 11 1 5.6307 -3.7400 -1.5693 12 1 5.4439 -3.8870 0.8438 13 1 3.4491 -3.9599 -0.5335 14 6 4.2865 1.4005 -2.4148 15 6 5.7104 1.1036 -2.8904 16 6 6.0441 2.0043 -4.0838 17 7 5.0134 1.8238 -5.1153 18 6 5.3555 1.5063 -6.3796 19 8 6.5285 1.4305 -6.6914 20 6 4.3099 1.2515 -7.3825 21 6 4.6453 0.8556 -8.6069 22 6 3.5774 0.4206 -9.5773 23 6 6.0933 0.8418 -9.0242 24 6 6.4249 0.2759 -10.4066 25 6 6.7796 -0.5200 -9.1491 26 6 3.6032 2.0021 -4.7435 27 6 3.2966 1.0959 -3.5415 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1764 0.0890 35 1 5.5047 -1.3718 1.5063 36 1 4.2081 2.4517 -2.1371 37 1 5.7829 0.0587 -3.1918 38 1 6.4128 1.2985 -2.0800 39 1 7.0181 1.7289 -4.4883 40 1 6.0626 3.0462 -3.7641 41 1 3.2698 1.3860 -7.1244 42 1 3.4077 -0.6512 -9.4744 43 1 2.6527 0.9570 -9.3643 44 1 3.8993 0.6416 -10.5950 45 1 6.6942 1.6770 -8.6646 46 1 5.5955 -0.0859 -11.0144 47 1 7.2439 0.7392 -10.9567 48 1 7.8320 -0.5806 -8.8720 49 1 6.1838 -1.4059 -8.9290 50 1 3.4249 3.0433 -4.4746 51 1 2.9661 1.7252 -5.5835 52 1 3.3917 0.0510 -3.8368 53 1 2.2808 1.2854 -3.1943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754549629.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:51 Heat of formation + Delta-G solvation = -24.369958 kcal Electronic energy + Delta-G solvation = -30683.891294 eV Core-core repulsion = 26750.328326 eV Total energy + Delta-G solvation = -3933.562968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.23253 -39.45681 -38.65035 -37.99538 -36.44135 -34.44304 -33.67431 -32.31657 -31.85932 -29.83253 -28.82298 -27.12778 -26.41177 -25.02044 -24.44217 -23.68111 -23.18836 -22.32713 -21.62526 -20.47616 -19.08786 -18.51697 -17.93552 -17.27511 -17.00999 -16.67004 -16.50012 -16.32923 -15.84678 -15.62651 -15.46653 -15.34932 -15.16738 -14.78487 -14.68348 -14.11835 -14.04237 -13.78287 -13.62686 -13.30227 -13.28434 -13.17160 -13.10299 -12.83453 -12.67527 -12.54944 -12.45483 -12.33559 -12.17098 -12.12746 -12.04149 -11.80950 -11.64286 -11.53180 -11.44940 -11.18347 -11.05628 -10.43651 -10.35689 -10.26146 -9.93372 -9.42660 -8.33282 -7.59616 -5.36610 0.39706 1.46066 1.46407 1.51318 2.12852 2.35778 2.56888 3.05000 3.28155 3.46128 3.59484 3.65843 3.70038 3.98160 4.07719 4.12598 4.17265 4.24721 4.28846 4.36897 4.45807 4.47004 4.48390 4.58082 4.65481 4.67305 4.70995 4.72641 4.76062 4.84009 4.85196 4.86847 4.89810 4.95023 4.96566 5.00062 5.08481 5.09840 5.15716 5.23502 5.24383 5.30074 5.45974 5.51827 5.63083 5.64518 5.74517 5.77528 6.09086 6.57921 6.59805 6.80118 7.30461 7.36710 8.02807 8.51565 9.28589 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.003148 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.571289 B = 8892.112901 C = 9511.073809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.058 3.942 4 C 0.124 3.876 5 N -0.586 5.586 6 C -0.213 4.213 7 H 0.040 0.960 8 C -0.029 4.029 9 N -0.922 5.922 10 Si 0.941 3.059 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.283 1.283 14 C 0.174 3.826 15 C -0.118 4.118 16 C 0.124 3.876 17 N -0.606 5.606 18 C 0.536 3.464 19 O -0.581 6.581 20 C -0.243 4.243 21 C 0.001 3.999 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.161 4.161 25 C -0.171 4.171 26 C 0.114 3.886 27 C -0.128 4.128 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.245 0.755 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.155 0.845 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.118 0.882 47 H 0.102 0.898 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.088 0.912 51 H 0.107 0.893 52 H 0.038 0.962 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 8.007 -17.604 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.021 4.021 4 C -0.002 4.002 5 N -0.306 5.306 6 C -0.344 4.344 7 H 0.057 0.943 8 C -0.225 4.225 9 N -0.569 5.569 10 Si 0.771 3.229 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.209 1.209 14 C 0.068 3.932 15 C -0.158 4.158 16 C 0.001 3.999 17 N -0.337 5.337 18 C 0.329 3.671 19 O -0.464 6.464 20 C -0.263 4.263 21 C -0.001 4.001 22 C -0.181 4.181 23 C -0.152 4.152 24 C -0.198 4.198 25 C -0.208 4.208 26 C -0.008 4.008 27 C -0.169 4.169 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.172 0.828 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.123 0.877 46 H 0.136 0.864 47 H 0.121 0.879 48 H 0.101 0.899 49 H 0.109 0.891 50 H 0.107 0.893 51 H 0.125 0.875 52 H 0.057 0.943 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.709 7.741 -17.568 20.336 hybrid contribution 0.267 -1.105 0.925 1.466 sum -6.442 6.637 -16.642 19.040 Atomic orbital electron populations 1.22793 0.81886 1.02385 0.99925 1.88162 1.19294 1.28884 1.95131 1.23242 0.97166 0.83731 0.97948 1.21334 0.89365 0.96422 0.93062 1.43845 1.76113 1.01983 1.08624 1.18689 1.30157 0.83703 1.01895 0.94259 1.25743 0.98463 1.00304 0.97953 1.69701 1.44916 1.34519 1.07732 0.85765 0.77435 0.83450 0.76264 1.21299 1.22052 1.20934 1.20519 0.91512 0.93693 0.87523 1.22057 0.99202 0.98456 0.96099 1.21475 0.91488 0.99591 0.87358 1.48125 1.08419 1.68602 1.08596 1.19115 0.89209 0.75921 0.82864 1.90691 1.21286 1.54625 1.79836 1.22575 0.99444 1.10477 0.93822 1.22176 0.94812 0.89236 0.93905 1.21100 0.96224 1.02509 0.98280 1.21359 0.93964 0.99140 1.00753 1.23243 1.04110 1.02665 0.89786 1.22794 1.00707 0.94252 1.03065 1.22077 0.80350 1.00354 0.98034 1.22296 0.99918 0.98968 0.95670 0.90259 0.93803 0.93793 0.94170 0.94352 0.89216 0.93656 0.94491 0.91745 0.94855 0.93196 0.91378 0.90090 0.82757 0.89508 0.89238 0.89332 0.87729 0.86365 0.87913 0.89909 0.89110 0.89349 0.87515 0.94346 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -16.99 10.18 -148.98 -1.52 -18.50 16 3 C 0.06 2.23 6.28 71.98 0.45 2.68 16 4 C 0.12 5.65 5.70 86.38 0.49 6.14 16 5 N -0.59 -27.54 2.36 -677.89 -1.60 -29.14 16 6 C -0.21 -11.47 7.64 84.03 0.64 -10.83 16 7 H 0.04 2.21 7.04 -2.91 -0.02 2.18 16 8 C -0.03 -1.65 5.34 84.86 0.45 -1.19 16 9 N -0.92 -53.70 10.71 21.65 0.23 -53.47 16 10 Si 0.94 46.66 29.55 68.60 2.03 48.68 16 11 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 13 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 14 C 0.17 6.65 2.59 45.02 0.12 6.77 16 15 C -0.12 -4.70 5.23 30.67 0.16 -4.54 16 16 C 0.12 4.09 6.42 86.36 0.55 4.65 16 17 N -0.61 -18.24 2.97 -822.34 -2.44 -20.68 16 18 C 0.54 16.86 7.61 86.57 0.66 17.52 16 19 O -0.58 -21.83 12.69 -4.05 -0.05 -21.88 16 20 C -0.24 -5.71 8.95 23.43 0.21 -5.50 16 21 C 0.00 0.01 5.80 -17.62 -0.10 -0.09 16 22 C -0.13 -1.55 9.42 71.24 0.67 -0.88 16 23 C -0.13 -3.21 4.22 -11.54 -0.05 -3.26 16 24 C -0.16 -2.77 9.77 30.59 0.30 -2.47 16 25 C -0.17 -3.97 10.23 30.60 0.31 -3.66 16 26 C 0.11 2.78 6.38 86.51 0.55 3.33 16 27 C -0.13 -4.17 5.39 30.82 0.17 -4.00 16 28 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 4.89 5.07 -2.39 -0.01 4.88 16 34 H 0.05 1.89 7.89 -2.39 -0.02 1.87 16 35 H 0.25 14.11 8.31 -92.72 -0.77 13.34 16 36 H 0.06 2.23 7.77 -2.39 -0.02 2.21 16 37 H 0.03 1.54 7.62 -2.39 -0.02 1.53 16 38 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.07 2.46 7.02 -2.39 -0.02 2.44 16 40 H 0.08 2.30 8.14 -2.38 -0.02 2.29 16 41 H 0.16 2.70 5.85 -2.91 -0.02 2.69 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 0.84 8.06 -2.39 -0.02 0.82 16 44 H 0.09 0.84 6.51 -2.38 -0.02 0.83 16 45 H 0.10 3.13 6.40 -2.39 -0.02 3.11 16 46 H 0.12 1.46 6.40 -2.39 -0.02 1.45 16 47 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.11 2.02 5.30 -2.39 -0.01 2.01 16 52 H 0.04 1.47 7.26 -2.39 -0.02 1.45 16 53 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.94 410.09 4.37 -65.57 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.88 Total: 22.67 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 6.84 Total: 6.74 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -3.81 Total: -103.28 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.57 Total: -40.39 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -69.94 4.37 -65.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754549629.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.199 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds