Wall clock time and date at job start Tue Mar 31 2020 20:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00101 * 2 1 4 4 C 1.52997 * 109.47352 * 118.78118 * 3 2 1 5 5 C 1.52995 * 109.47180 * 358.77318 * 3 2 1 6 6 C 1.53001 * 109.47278 * 175.48440 * 5 3 2 7 7 O 1.42904 * 109.47084 * 174.64165 * 6 5 3 8 8 C 1.42898 * 113.99664 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46821 * 238.77905 * 3 2 1 10 10 O 1.21284 * 120.00121 * 119.99943 * 9 3 2 11 11 N 1.34780 * 120.00029 * 299.99814 * 9 3 2 12 12 C 1.47182 * 135.99220 * 359.62821 * 11 9 3 13 13 C 1.53199 * 87.72972 * 153.42632 * 12 11 9 14 14 C 1.47176 * 135.99546 * 180.02562 * 11 9 3 15 15 C 1.52515 * 114.08387 * 139.66479 * 13 12 11 16 16 C 1.53207 * 109.35544 * 190.14929 * 15 13 12 17 17 C 1.53145 * 109.35039 * 301.10244 * 16 15 13 18 18 N 1.46895 * 109.11127 * 56.51499 * 17 16 15 19 19 C 1.36939 * 120.70062 * 124.57420 * 18 17 16 20 20 H 1.08007 * 119.99713 * 330.53528 * 19 18 17 21 21 C 1.38807 * 120.00058 * 150.53559 * 19 18 17 22 22 N 1.31618 * 120.00207 * 343.11422 * 21 19 18 23 23 Si 1.86807 * 119.99992 * 163.10842 * 21 19 18 24 24 H 1.48501 * 109.46980 * 90.00196 * 23 21 19 25 25 H 1.48492 * 109.47383 * 210.00002 * 23 21 19 26 26 H 1.48499 * 109.47274 * 330.00749 * 23 21 19 27 27 C 1.47138 * 118.60383 * 304.59710 * 18 17 16 28 28 H 1.08004 * 119.99879 * 185.35254 * 1 2 3 29 29 H 1.07999 * 119.99989 * 5.34641 * 1 2 3 30 30 H 1.08003 * 119.99651 * 179.72006 * 2 1 3 31 31 H 1.08995 * 109.47319 * 59.99602 * 4 3 2 32 32 H 1.09000 * 109.46751 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.46649 * 299.99561 * 4 3 2 34 34 H 1.08998 * 109.47630 * 295.48862 * 5 3 2 35 35 H 1.09009 * 109.46897 * 55.48516 * 5 3 2 36 36 H 1.09001 * 109.47240 * 294.64161 * 6 5 3 37 37 H 1.08996 * 109.47063 * 54.64133 * 6 5 3 38 38 H 1.08999 * 109.47281 * 299.99999 * 8 7 6 39 39 H 1.08997 * 109.47130 * 60.00062 * 8 7 6 40 40 H 1.08998 * 109.46822 * 180.02562 * 8 7 6 41 41 H 1.08997 * 113.49500 * 268.11313 * 12 11 9 42 42 H 1.09000 * 113.49241 * 38.63422 * 12 11 9 43 43 H 1.08998 * 113.48904 * 321.36702 * 14 11 9 44 44 H 1.09002 * 113.48694 * 91.81742 * 14 11 9 45 45 H 1.08997 * 109.48848 * 310.10870 * 15 13 12 46 46 H 1.08995 * 109.49192 * 70.18359 * 15 13 12 47 47 H 1.08994 * 109.49193 * 181.13808 * 16 15 13 48 48 H 1.09005 * 109.51011 * 61.07460 * 16 15 13 49 49 H 1.09001 * 109.53079 * 296.62552 * 17 16 15 50 50 H 1.09004 * 109.53211 * 176.40461 * 17 16 15 51 51 H 0.97001 * 120.00197 * 179.97438 * 22 21 19 52 52 H 1.09007 * 109.63857 * 291.54261 * 27 18 17 53 53 H 1.08996 * 109.81344 * 171.02569 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9200 1.3995 1.2643 5 6 1.0696 2.4678 -0.0309 6 6 1.8291 3.7912 0.0826 7 8 0.9157 4.8793 -0.0713 8 6 1.5267 6.1680 0.0180 9 6 2.9524 1.3718 -1.2151 10 8 2.8055 2.2617 -2.0258 11 7 3.9108 0.4425 -1.4008 12 6 4.3911 -0.7430 -0.6726 13 6 4.8643 -1.3023 -2.0181 14 6 4.9405 0.1721 -2.4170 15 6 6.2171 -2.0041 -1.9592 16 6 6.7015 -2.2934 -3.3836 17 6 5.6725 -3.1722 -4.1008 18 7 4.3661 -2.5011 -4.0756 19 6 3.6845 -2.2540 -5.2374 20 1 4.2265 -2.0938 -6.1578 21 6 2.2972 -2.2095 -5.2321 22 7 1.6262 -2.7204 -4.2216 23 14 1.3824 -1.4245 -6.6592 24 1 1.0978 -2.4539 -7.6910 25 1 0.1046 -0.8471 -6.1705 26 1 2.2176 -0.3486 -7.2507 27 6 3.8054 -2.0994 -2.7759 28 1 -0.5400 -0.9313 0.0873 29 1 -0.5400 0.9312 -0.0871 30 1 1.8499 -0.9354 0.0046 31 1 3.6280 0.5712 1.2862 32 1 3.4646 2.3437 1.2644 33 1 2.2770 1.3513 2.1431 34 1 0.5146 2.4467 -0.9688 35 1 0.3753 2.3746 0.8043 36 1 2.3068 3.8533 1.0604 37 1 2.5892 3.8418 -0.6969 38 1 1.9984 6.2797 0.9943 39 1 2.2803 6.2677 -0.7632 40 1 0.7673 6.9396 -0.1086 41 1 5.2056 -0.5277 0.0189 42 1 3.5914 -1.3255 -0.2152 43 1 4.6059 0.3643 -3.4364 44 1 5.9023 0.6344 -2.1946 45 1 6.9382 -1.3620 -1.4533 46 1 6.1172 -2.9412 -1.4117 47 1 7.6588 -2.8131 -3.3437 48 1 6.8193 -1.3551 -3.9257 49 1 5.5979 -4.1340 -3.5934 50 1 5.9828 -3.3271 -5.1342 51 1 0.6567 -2.6890 -4.2177 52 1 3.5355 -2.9869 -2.2034 53 1 2.9217 -1.4803 -2.9302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755457296.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:13 Heat of formation + Delta-G solvation = -21.036044 kcal Electronic energy + Delta-G solvation = -31793.820494 eV Core-core repulsion = 27860.402096 eV Total energy + Delta-G solvation = -3933.418398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.14108 -40.46017 -38.70686 -37.45754 -37.25353 -34.71954 -32.43713 -32.22053 -31.49267 -30.07831 -27.76715 -27.33573 -27.12247 -26.93184 -25.37126 -23.97082 -23.39960 -22.33510 -21.16959 -19.54572 -19.38031 -18.51357 -17.74758 -17.58259 -17.30529 -16.78927 -16.74124 -16.61900 -16.08111 -15.78753 -15.33133 -15.27432 -14.97173 -14.86641 -14.73420 -14.52623 -14.26445 -14.02335 -13.72441 -13.55072 -13.31058 -13.16807 -13.04451 -12.96234 -12.68711 -12.65983 -12.61479 -12.52849 -12.32343 -12.23513 -12.03035 -11.91721 -11.73795 -11.67455 -11.45542 -11.24545 -10.95722 -10.83469 -10.56401 -10.55074 -10.13962 -9.61893 -8.64426 -7.91919 -5.34169 1.17040 1.34251 1.39885 1.45304 1.68639 1.93351 2.44257 2.73202 3.21057 3.36707 3.42168 3.59021 3.80439 3.87175 4.00635 4.01860 4.15844 4.16593 4.27838 4.29349 4.34794 4.39929 4.44832 4.47276 4.50338 4.52886 4.58354 4.65817 4.72084 4.76956 4.79571 4.83526 4.91063 4.92464 4.97627 4.99481 5.05932 5.09234 5.10504 5.20440 5.24564 5.31448 5.37653 5.50552 5.57850 5.63728 5.69176 5.73902 5.75435 6.19516 6.37563 6.82452 7.13308 7.14701 7.87850 8.37211 9.13340 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011063 B = 0.004229 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.435207 B = 6619.570748 C = 7695.030503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C -0.032 4.032 4 C -0.134 4.134 5 C -0.093 4.093 6 C 0.060 3.940 7 O -0.418 6.418 8 C 0.027 3.973 9 C 0.541 3.459 10 O -0.590 6.590 11 N -0.637 5.637 12 C 0.115 3.885 13 C -0.108 4.108 14 C 0.116 3.884 15 C -0.085 4.085 16 C -0.125 4.125 17 C 0.137 3.863 18 N -0.607 5.607 19 C -0.258 4.258 20 H 0.059 0.941 21 C -0.038 4.038 22 N -0.922 5.922 23 Si 0.943 3.057 24 H -0.276 1.276 25 H -0.300 1.300 26 H -0.280 1.280 27 C 0.216 3.784 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.059 0.941 39 H 0.034 0.966 40 H 0.099 0.901 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.031 0.969 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.048 0.952 49 H 0.019 0.981 50 H 0.044 0.956 51 H 0.246 0.754 52 H 0.002 0.998 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.526 7.423 17.325 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.177 4.177 3 C -0.035 4.035 4 C -0.191 4.191 5 C -0.130 4.130 6 C -0.016 4.016 7 O -0.337 6.337 8 C -0.069 4.069 9 C 0.332 3.668 10 O -0.472 6.472 11 N -0.370 5.370 12 C -0.007 4.007 13 C -0.110 4.110 14 C -0.006 4.006 15 C -0.122 4.122 16 C -0.163 4.163 17 C 0.012 3.988 18 N -0.331 5.331 19 C -0.389 4.389 20 H 0.076 0.924 21 C -0.234 4.234 22 N -0.568 5.568 23 Si 0.772 3.228 24 H -0.202 1.202 25 H -0.227 1.227 26 H -0.205 1.205 27 C 0.090 3.910 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.118 0.882 41 H 0.146 0.854 42 H 0.101 0.899 43 H 0.050 0.950 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.067 0.933 49 H 0.037 0.963 50 H 0.063 0.937 51 H 0.056 0.944 52 H 0.020 0.980 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.929 7.999 16.893 19.934 hybrid contribution -0.917 0.345 -1.666 1.933 sum 6.012 8.344 15.228 18.375 Atomic orbital electron populations 1.24175 0.96002 1.03045 0.98483 1.22764 0.96345 0.96413 1.02155 1.19769 0.94783 0.94865 0.94083 1.21916 0.99613 1.03340 0.94210 1.21382 0.97513 0.91398 1.02729 1.22749 0.92171 0.86135 1.00532 1.87787 1.36323 1.15388 1.94224 1.22902 0.99260 0.84041 1.00720 1.20644 0.79779 0.79071 0.87316 1.90640 1.71860 1.36846 1.47826 1.49613 1.32091 1.27981 1.27279 1.23430 0.99347 0.82732 0.95217 1.22464 0.98901 0.93834 0.95849 1.22988 0.91019 0.94520 0.92102 1.21244 0.93251 1.00820 0.96921 1.21907 0.98354 0.99820 0.96267 1.21101 0.85598 0.93744 0.98383 1.44230 1.19278 1.67054 1.02494 1.19337 0.88737 1.41662 0.89152 0.92361 1.25550 0.97726 1.00708 0.99425 1.70109 1.05870 1.47440 1.33372 0.85650 0.77998 0.78759 0.80406 1.20213 1.22650 1.20526 1.20027 0.92798 0.93927 0.84263 0.87142 0.87498 0.86316 0.90317 0.91462 0.88915 0.93582 0.88155 0.90979 0.93980 0.92252 0.94721 0.88222 0.85371 0.89917 0.95013 0.87619 0.88860 0.90705 0.89437 0.93313 0.96299 0.93690 0.94433 0.97979 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.88 13.68 67.78 0.93 -3.95 16 2 C -0.16 -4.46 8.36 25.65 0.21 -4.25 16 3 C -0.03 -0.88 0.55 -53.68 -0.03 -0.91 16 4 C -0.13 -2.46 7.87 71.98 0.57 -1.89 16 5 C -0.09 -2.63 2.96 30.59 0.09 -2.54 16 6 C 0.06 1.67 5.06 71.98 0.36 2.03 16 7 O -0.42 -12.09 10.70 -148.98 -1.59 -13.68 16 8 C 0.03 0.55 11.01 113.37 1.25 1.80 16 9 C 0.54 19.73 6.39 87.66 0.56 20.29 16 10 O -0.59 -26.96 14.74 -3.04 -0.04 -27.01 16 11 N -0.64 -21.10 3.38 -857.18 -2.89 -24.00 16 12 C 0.11 2.84 5.57 83.44 0.46 3.31 16 13 C -0.11 -3.44 0.96 -52.40 -0.05 -3.49 16 14 C 0.12 4.00 7.53 83.35 0.63 4.62 16 15 C -0.08 -2.06 5.11 30.50 0.16 -1.91 16 16 C -0.12 -3.55 6.03 30.71 0.19 -3.36 16 17 C 0.14 5.33 6.45 86.35 0.56 5.89 16 18 N -0.61 -29.77 2.99 -699.70 -2.09 -31.87 16 19 C -0.26 -14.53 9.57 84.03 0.80 -13.73 16 20 H 0.06 3.26 7.89 -2.91 -0.02 3.24 16 21 C -0.04 -2.18 4.91 84.86 0.42 -1.77 16 22 N -0.92 -55.43 11.35 21.65 0.25 -55.18 16 23 Si 0.94 48.03 29.59 68.60 2.03 50.06 16 24 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 26 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 27 C 0.22 9.80 4.41 86.15 0.38 10.18 16 28 H 0.11 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.11 2.79 5.72 -2.91 -0.02 2.77 16 30 H 0.12 3.34 5.85 -2.91 -0.02 3.33 16 31 H 0.08 1.25 6.31 -2.39 -0.02 1.23 16 32 H 0.07 1.18 6.47 -2.39 -0.02 1.16 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.63 7.56 -2.39 -0.02 1.61 16 35 H 0.10 2.34 7.24 -2.38 -0.02 2.32 16 36 H 0.07 1.54 6.68 -2.39 -0.02 1.52 16 37 H 0.04 1.42 5.83 -2.39 -0.01 1.40 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.13 2.02 8.04 -2.39 -0.02 2.00 16 42 H 0.08 2.02 5.95 -2.39 -0.01 2.00 16 43 H 0.03 1.41 8.11 -2.39 -0.02 1.39 16 44 H 0.11 2.87 8.07 -2.39 -0.02 2.86 16 45 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 46 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.05 1.50 8.02 -2.38 -0.02 1.48 16 49 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.04 1.78 7.93 -2.38 -0.02 1.76 16 51 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 52 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 53 H 0.04 2.22 6.13 -2.39 -0.01 2.21 16 Total: -1.00 -77.02 401.88 4.00 -73.01 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.87 Total: 18.33 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 7.48 Total: 10.33 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -4.74 Total: -111.04 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.64 Total: -40.69 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -77.02 4.00 -73.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755457296.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.978 kcal (2) G-P(sol) polarization free energy of solvation -77.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds