Wall clock time and date at job start Tue Mar 31 2020 21:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 N 1.46499 * 109.47271 * 175.98644 * 3 2 1 5 5 C 1.37096 * 120.00401 * 264.24108 * 4 3 2 6 6 H 1.07991 * 120.00639 * 187.10168 * 5 4 3 7 7 C 1.38956 * 119.99581 * 7.09072 * 5 4 3 8 8 N 1.31417 * 119.99819 * 23.97528 * 7 5 4 9 9 Si 1.86797 * 119.99970 * 203.97476 * 7 5 4 10 10 H 1.48498 * 109.47339 * 90.00335 * 9 7 5 11 11 H 1.48501 * 109.46909 * 209.99952 * 9 7 5 12 12 H 1.48500 * 109.47061 * 329.99888 * 9 7 5 13 13 C 1.34782 * 120.00283 * 84.23720 * 4 3 2 14 14 O 1.21297 * 119.99335 * 4.95500 * 13 4 3 15 15 C 1.50698 * 120.00464 * 184.95942 * 13 4 3 16 16 H 1.08996 * 110.85524 * 34.18818 * 15 13 4 17 17 C 1.54634 * 110.96686 * 270.40446 * 15 13 4 18 18 C 1.51282 * 104.19208 * 217.04614 * 17 15 13 19 19 O 1.21282 * 124.93884 * 196.23286 * 18 17 15 20 20 N 1.34417 * 110.11518 * 16.24945 * 18 17 15 21 21 C 1.46507 * 124.34645 * 180.40910 * 20 18 17 22 22 C 1.52994 * 109.46897 * 300.02644 * 21 20 18 23 23 C 1.53008 * 109.46812 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.47308 * 299.99956 * 23 22 21 25 25 C 1.52999 * 109.47169 * 179.97438 * 24 23 22 26 26 C 1.53002 * 109.47022 * 59.99805 * 24 23 22 27 27 C 1.52997 * 109.47513 * 300.00013 * 26 24 23 28 28 C 1.46762 * 111.30474 * 0.67278 * 20 18 17 29 29 H 1.08995 * 109.47631 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47312 * 300.00122 * 1 2 3 31 31 H 1.09002 * 109.47383 * 59.99994 * 1 2 3 32 32 H 1.09002 * 109.47194 * 240.00414 * 2 1 3 33 33 H 1.09002 * 109.47383 * 120.00006 * 2 1 3 34 34 H 1.09001 * 109.47397 * 55.98405 * 3 2 1 35 35 H 1.09003 * 109.47347 * 295.98381 * 3 2 1 36 36 H 0.97002 * 119.99595 * 180.02562 * 8 7 5 37 37 H 1.08997 * 110.48755 * 98.36198 * 17 15 13 38 38 H 1.08998 * 110.48000 * 335.72012 * 17 15 13 39 39 H 1.09002 * 109.46771 * 180.02562 * 21 20 18 40 40 H 1.08997 * 109.47393 * 60.00464 * 22 21 20 41 41 H 1.08998 * 109.47381 * 299.99405 * 22 21 20 42 42 H 1.09003 * 109.47310 * 179.97438 * 23 22 21 43 43 H 1.09010 * 109.46797 * 60.00019 * 23 22 21 44 44 H 1.08994 * 109.47191 * 300.00119 * 24 23 22 45 45 H 1.09000 * 109.46983 * 60.00046 * 25 24 23 46 46 H 1.08999 * 109.47366 * 299.99765 * 25 24 23 47 47 H 1.08998 * 109.47430 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.47237 * 60.00403 * 26 24 23 49 49 H 1.09004 * 109.47154 * 179.97438 * 26 24 23 50 50 H 1.08999 * 109.47187 * 300.00421 * 27 26 24 51 51 H 1.09000 * 109.47344 * 180.02562 * 27 26 24 52 52 H 1.09007 * 110.24352 * 101.71746 * 28 20 18 53 53 H 1.08994 * 110.24600 * 223.71676 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5017 1.4436 0.0967 5 6 4.1079 1.5908 1.3175 6 1 5.1799 1.7069 1.3777 7 6 3.3429 1.5910 2.4775 8 7 2.1675 1.0032 2.4895 9 14 3.9852 2.4265 4.0198 10 1 3.5518 3.8468 4.0304 11 1 3.4456 1.7354 5.2183 12 1 5.4687 2.3614 4.0368 13 6 4.2508 1.2999 -1.0146 14 8 3.7184 1.2599 -2.1037 15 6 5.7496 1.1889 -0.9040 16 1 6.0334 0.6592 0.0054 17 6 6.4136 2.5842 -0.9618 18 6 7.6871 2.3567 -1.7460 19 8 8.6271 3.1222 -1.7814 20 7 7.6251 1.1829 -2.3980 21 6 8.6953 0.6503 -3.2450 22 6 8.9715 1.6253 -4.3912 23 6 10.0896 1.0694 -5.2754 24 6 11.3592 0.8910 -4.4404 25 6 12.4770 0.3344 -5.3244 26 6 11.0829 -0.0841 -3.2941 27 6 9.9649 0.4718 -2.4099 28 6 6.3451 0.5063 -2.1575 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6190 1.9767 0.8518 35 1 1.7366 1.9352 -0.9238 36 1 1.6334 1.0037 3.2991 37 1 6.6424 2.9397 0.0429 38 1 5.7677 3.2927 -1.4803 39 1 8.3900 -0.3132 -3.6532 40 1 9.2768 2.5888 -3.9830 41 1 8.0670 1.7527 -4.9859 42 1 10.2862 1.7638 -6.0923 43 1 9.7848 0.1057 -5.6836 44 1 11.6639 1.8545 -4.0322 45 1 12.6740 1.0287 -6.1413 46 1 12.1720 -0.6293 -5.7323 47 1 13.3816 0.2077 -4.7297 48 1 10.7781 -1.0477 -3.7023 49 1 11.9875 -0.2115 -2.6995 50 1 10.2696 1.4355 -2.0018 51 1 9.7683 -0.2226 -1.5931 52 1 5.6823 0.6380 -3.0128 53 1 6.5091 -0.5541 -1.9661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066827189.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:29 Heat of formation + Delta-G solvation = -98.281547 kcal Electronic energy + Delta-G solvation = -30743.033391 eV Core-core repulsion = 26806.265376 eV Total energy + Delta-G solvation = -3936.768015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.95480 -40.40127 -39.15160 -37.53616 -36.75933 -34.60365 -33.96194 -33.26605 -31.74626 -31.24084 -28.72122 -27.71699 -26.96880 -26.21485 -23.71442 -23.64518 -22.90046 -22.06091 -20.96554 -20.73934 -20.01262 -18.83309 -18.26482 -17.72081 -16.89619 -16.41150 -16.20575 -15.85174 -15.67008 -15.36592 -15.29879 -15.27625 -15.19196 -14.84410 -14.58683 -14.53215 -14.26631 -13.87176 -13.66280 -13.47777 -13.31165 -13.17250 -13.16725 -13.11621 -12.65790 -12.54375 -12.46906 -12.40695 -12.26827 -12.14803 -12.06670 -12.03461 -11.98724 -11.88202 -11.55072 -11.35585 -11.19479 -11.06403 -10.79069 -10.70274 -10.24561 -9.70579 -9.64052 -8.26454 -5.77911 1.41660 1.51390 1.53685 1.60475 1.87345 2.06017 2.31121 2.90348 3.11652 3.38008 3.60015 3.74498 3.77009 3.94043 4.02027 4.03218 4.15723 4.19593 4.34633 4.34977 4.48120 4.51246 4.54057 4.57185 4.57682 4.59613 4.65952 4.74689 4.80286 4.82583 4.89432 4.91974 4.94758 4.99394 5.06856 5.10926 5.13260 5.16114 5.22827 5.25949 5.26630 5.34539 5.39788 5.43125 5.47504 5.56717 5.62175 5.70576 5.81698 5.90588 6.08712 6.51913 7.13542 7.16278 7.63204 8.03397 8.71585 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.002876 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.889308 B = 9733.306727 C =10707.677101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.136 3.864 4 N -0.442 5.442 5 C -0.358 4.358 6 H 0.111 0.889 7 C 0.007 3.993 8 N -0.864 5.864 9 Si 0.974 3.026 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.451 3.549 14 O -0.636 6.636 15 C -0.095 4.095 16 H 0.112 0.888 17 C -0.133 4.133 18 C 0.522 3.478 19 O -0.564 6.564 20 N -0.608 5.608 21 C 0.155 3.845 22 C -0.131 4.131 23 C -0.102 4.102 24 C -0.095 4.095 25 C -0.142 4.142 26 C -0.102 4.102 27 C -0.129 4.129 28 C 0.124 3.876 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.019 0.981 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.026 0.974 36 H 0.271 0.729 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.050 0.950 51 H 0.065 0.935 52 H 0.077 0.923 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.210 -4.567 -8.314 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C 0.013 3.987 4 N -0.157 5.157 5 C -0.485 4.485 6 H 0.129 0.871 7 C -0.198 4.198 8 N -0.502 5.502 9 Si 0.799 3.201 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.187 1.187 13 C 0.240 3.760 14 O -0.526 6.526 15 C -0.117 4.117 16 H 0.130 0.870 17 C -0.173 4.173 18 C 0.311 3.689 19 O -0.444 6.444 20 N -0.340 5.340 21 C 0.054 3.946 22 C -0.170 4.170 23 C -0.140 4.140 24 C -0.114 4.114 25 C -0.199 4.199 26 C -0.140 4.140 27 C -0.167 4.167 28 C 0.001 3.999 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.089 0.911 50 H 0.068 0.932 51 H 0.084 0.916 52 H 0.095 0.905 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.294 -4.285 -8.729 15.675 hybrid contribution -0.314 0.685 1.102 1.335 sum 11.979 -3.601 -7.627 14.651 Atomic orbital electron populations 1.21492 0.94780 1.01275 1.00913 1.21508 0.96290 0.96736 0.99571 1.21339 0.80474 0.97821 0.99029 1.44019 1.05723 1.59693 1.06281 1.19980 0.94631 1.51294 0.82594 0.87124 1.25857 0.96390 0.96172 1.01363 1.70239 1.13220 1.37063 1.29633 0.85205 0.79081 0.78218 0.77559 1.20675 1.21088 1.18694 1.20001 0.89170 0.83088 0.83763 1.90502 1.74635 1.59397 1.28026 1.21894 0.92428 0.97020 1.00308 0.87032 1.22180 0.94768 0.97738 1.02655 1.20875 0.87868 0.80925 0.79268 1.90630 1.38381 1.49605 1.65812 1.48528 1.17258 1.20539 1.47652 1.21230 0.85801 0.97773 0.89806 1.21883 0.99502 0.99104 0.96486 1.21518 0.93426 1.01835 0.97202 1.21159 0.95562 0.98757 0.95897 1.21778 0.97503 1.01329 0.99266 1.21521 0.97453 0.98959 0.96083 1.21873 0.94918 1.01343 0.98612 1.22033 0.83268 0.97412 0.97169 0.92302 0.92901 0.93469 0.96173 0.91231 0.89246 0.95609 0.91871 0.87177 0.88954 0.87379 0.93167 0.92358 0.91260 0.90261 0.92882 0.92485 0.91703 0.92353 0.90213 0.91057 0.93155 0.91626 0.90509 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 9.91 71.98 0.71 -3.80 16 2 C -0.10 -4.45 5.65 30.59 0.17 -4.28 16 3 C 0.14 6.40 4.58 86.38 0.40 6.79 16 4 N -0.44 -20.88 2.64 -635.53 -1.68 -22.56 16 5 C -0.36 -16.56 9.10 84.04 0.76 -15.79 16 6 H 0.11 4.78 5.93 -2.92 -0.02 4.77 16 7 C 0.01 0.30 4.96 84.93 0.42 0.72 16 8 N -0.86 -40.49 8.61 21.67 0.19 -40.30 16 9 Si 0.97 37.09 29.62 68.60 2.03 39.13 16 10 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.29 -10.84 7.11 99.48 0.71 -10.13 16 12 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 13 C 0.45 20.19 6.71 87.66 0.59 20.78 16 14 O -0.64 -31.54 15.27 -3.08 -0.05 -31.59 16 15 C -0.09 -3.41 2.52 -10.42 -0.03 -3.43 16 16 H 0.11 3.91 6.84 -2.39 -0.02 3.89 16 17 C -0.13 -4.64 6.26 30.59 0.19 -4.45 16 18 C 0.52 18.21 7.41 87.90 0.65 18.86 16 19 O -0.56 -22.31 15.11 -3.04 -0.05 -22.36 16 20 N -0.61 -18.07 2.83 -793.67 -2.25 -20.32 16 21 C 0.16 3.74 2.75 44.99 0.12 3.86 16 22 C -0.13 -3.17 5.21 30.59 0.16 -3.01 16 23 C -0.10 -1.79 5.20 30.60 0.16 -1.63 16 24 C -0.10 -1.62 2.72 -10.79 -0.03 -1.65 16 25 C -0.14 -1.81 9.19 71.98 0.66 -1.15 16 26 C -0.10 -1.73 5.20 30.59 0.16 -1.57 16 27 C -0.13 -2.96 5.21 30.60 0.16 -2.81 16 28 C 0.12 3.82 6.79 86.89 0.59 4.41 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 3.30 6.60 -2.39 -0.02 3.28 16 34 H 0.09 4.37 5.73 -2.39 -0.01 4.35 16 35 H 0.03 1.24 7.54 -2.39 -0.02 1.22 16 36 H 0.27 12.11 8.31 -92.71 -0.77 11.34 16 37 H 0.11 3.69 7.93 -2.39 -0.02 3.67 16 38 H 0.09 3.43 7.89 -2.39 -0.02 3.41 16 39 H 0.11 2.13 8.07 -2.39 -0.02 2.11 16 40 H 0.05 1.51 6.77 -2.39 -0.02 1.50 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 50 H 0.05 1.46 6.80 -2.39 -0.02 1.45 16 51 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.08 2.64 6.88 -2.38 -0.02 2.62 16 53 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -57.62 402.18 4.93 -52.69 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.87 Total: 33.48 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 5.85 Total: 11.84 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -3.74 Total: -83.18 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -0.09 Total: -53.95 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.13 kcal Total: -57.62 4.93 -52.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066827189.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.596 kcal (2) G-P(sol) polarization free energy of solvation -57.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds