Wall clock time and date at job start Tue Mar 31 2020 20:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47202 * 2 1 4 4 H 1.08998 * 109.46983 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.46884 * 185.55558 * 3 2 1 6 6 H 1.08005 * 120.00416 * 245.60709 * 5 3 2 7 7 C 1.37879 * 120.00068 * 65.60605 * 5 3 2 8 8 N 1.31513 * 120.00004 * 196.28508 * 7 5 3 9 9 Si 1.86799 * 120.00206 * 16.28675 * 7 5 3 10 10 H 1.48494 * 109.47293 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.46881 * 59.99614 * 9 7 5 12 12 H 1.48498 * 109.46884 * 300.00115 * 9 7 5 13 13 N 1.46497 * 109.46909 * 65.55603 * 3 2 1 14 14 C 1.34778 * 120.00169 * 275.00158 * 13 3 2 15 15 O 1.21281 * 119.99548 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00101 * 180.02562 * 14 13 3 17 17 H 1.08998 * 110.85501 * 297.65947 * 16 14 13 18 18 C 1.54632 * 110.97209 * 61.45076 * 16 14 13 19 19 C 1.51274 * 104.19795 * 142.91459 * 18 16 14 20 20 O 1.21280 * 124.94057 * 163.70784 * 19 18 16 21 21 N 1.34425 * 110.11783 * 343.75217 * 19 18 16 22 22 C 1.46496 * 124.34866 * 179.57067 * 21 19 18 23 23 C 1.52995 * 109.47261 * 59.97654 * 22 21 19 24 24 C 1.53004 * 109.47225 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47290 * 59.99297 * 24 23 22 26 26 C 1.53000 * 109.46943 * 180.02562 * 25 24 23 27 27 C 1.53000 * 109.47096 * 300.00315 * 25 24 23 28 28 C 1.52996 * 109.47401 * 59.99947 * 27 25 24 29 29 C 1.46760 * 111.29839 * 359.58650 * 21 19 18 30 30 H 1.09002 * 109.47643 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47221 * 299.99671 * 1 2 3 32 32 H 1.08999 * 109.47586 * 59.99654 * 1 2 3 33 33 H 1.09002 * 109.46737 * 240.00111 * 2 1 3 34 34 H 1.08997 * 109.47133 * 120.00619 * 2 1 3 35 35 H 0.97003 * 120.00251 * 354.83342 * 8 7 5 36 36 H 0.97004 * 120.00235 * 94.99700 * 13 3 2 37 37 H 1.09003 * 110.48202 * 261.59642 * 18 16 14 38 38 H 1.08997 * 110.48658 * 24.23314 * 18 16 14 39 39 H 1.09008 * 109.46577 * 179.97438 * 22 21 19 40 40 H 1.09005 * 109.47057 * 299.99556 * 23 22 21 41 41 H 1.08998 * 109.47756 * 59.99231 * 23 22 21 42 42 H 1.09005 * 109.46683 * 299.99715 * 24 23 22 43 43 H 1.08995 * 109.47243 * 179.97438 * 24 23 22 44 44 H 1.08995 * 109.47030 * 60.00513 * 25 24 23 45 45 H 1.08999 * 109.46870 * 180.02562 * 26 25 24 46 46 H 1.08995 * 109.47092 * 299.99948 * 26 25 24 47 47 H 1.08997 * 109.47454 * 59.99744 * 26 25 24 48 48 H 1.09007 * 109.46922 * 299.99886 * 27 25 24 49 49 H 1.08999 * 109.46993 * 179.97438 * 27 25 24 50 50 H 1.08995 * 109.47336 * 179.97438 * 28 27 25 51 51 H 1.09005 * 109.46842 * 59.99614 * 28 27 25 52 52 H 1.09000 * 110.25013 * 258.02198 * 29 21 19 53 53 H 1.08999 * 110.24619 * 136.01588 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1375 6 1 4.1568 1.8040 0.6734 7 6 4.1272 0.9878 -1.2987 8 7 5.4071 0.6859 -1.3143 9 14 3.1039 0.7978 -2.8499 10 1 3.9631 0.2934 -3.9511 11 1 2.5326 2.1146 -3.2305 12 1 2.0022 -0.1664 -2.6011 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3856 15 8 -0.3352 2.6312 0.4597 16 6 0.0610 3.3299 2.6788 17 1 0.0524 2.6130 3.4998 18 6 1.0022 4.5166 2.9903 19 6 0.0947 5.5579 3.6071 20 8 0.4721 6.5191 4.2432 21 7 -1.1909 5.2623 3.3486 22 6 -2.3309 6.0598 3.8077 23 6 -2.2214 7.4778 3.2439 24 6 -3.4116 8.3108 3.7240 25 6 -3.4105 8.3682 5.2529 26 6 -4.6011 9.2007 5.7328 27 6 -3.5200 6.9501 5.8165 28 6 -2.3298 6.1171 5.3366 29 6 -1.3057 4.0380 2.5476 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 5.9548 0.8549 -0.5317 36 1 2.2902 2.1166 1.9978 37 1 1.7742 4.2155 3.6985 38 1 1.4520 4.8976 2.0734 39 1 -3.2575 5.6017 3.4616 40 1 -1.2947 7.9359 3.5900 41 1 -2.2216 7.4370 2.1547 42 1 -4.3384 7.8530 3.3782 43 1 -3.3334 9.3212 3.3227 44 1 -2.4837 8.8260 5.5986 45 1 -4.6000 9.2419 6.8220 46 1 -4.5234 10.2110 5.3313 47 1 -5.5277 8.7426 5.3871 48 1 -4.4469 6.4923 5.4708 49 1 -3.5188 6.9909 6.9058 50 1 -2.4076 5.1069 5.7385 51 1 -1.4030 6.5750 5.6823 52 1 -1.5032 4.2864 1.5049 53 1 -2.0989 3.4025 2.9415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183838023.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:11 Heat of formation + Delta-G solvation = -121.349414 kcal Electronic energy + Delta-G solvation = -30352.980928 eV Core-core repulsion = 26415.212615 eV Total energy + Delta-G solvation = -3937.768313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05631 -40.62011 -39.19693 -37.55856 -36.79374 -34.70666 -34.36678 -33.06076 -31.76112 -31.25399 -29.15192 -28.68350 -26.92342 -24.71106 -23.91295 -23.67333 -22.93589 -21.87747 -21.11843 -20.81330 -20.05610 -19.73425 -18.32674 -17.89503 -17.24570 -16.76682 -16.33694 -16.16979 -15.56286 -15.42041 -15.30310 -15.22869 -15.03702 -14.86038 -14.62459 -14.58820 -14.42754 -14.21129 -13.94289 -13.81284 -13.47560 -13.28774 -13.19026 -13.18638 -12.65166 -12.57978 -12.47707 -12.43931 -12.37620 -12.25527 -12.06357 -12.01733 -11.76598 -11.57436 -11.36183 -11.21847 -11.09089 -11.08399 -10.88646 -10.54603 -10.46003 -9.78662 -9.67885 -8.77095 -6.42188 1.46195 1.47995 1.51308 1.69237 1.72667 1.87762 2.42383 2.46241 3.03359 3.21374 3.35048 3.68552 3.72615 3.82292 3.87422 3.95363 4.11942 4.17207 4.22241 4.34652 4.37367 4.45894 4.46091 4.52002 4.55275 4.55923 4.57609 4.62033 4.74266 4.79285 4.86982 4.90037 4.91744 4.94420 4.98026 5.08168 5.14557 5.16824 5.21038 5.24388 5.26935 5.35102 5.37589 5.41643 5.54493 5.59375 5.66633 5.68516 5.72831 6.03199 6.07232 6.55387 6.86197 7.09790 7.31090 7.45013 8.62111 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024677 B = 0.002378 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.379862 B =11770.366640 C =12019.335675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.252 3.748 4 H 0.023 0.977 5 C -0.610 4.610 6 H 0.040 0.960 7 C -0.008 4.008 8 N -0.931 5.931 9 Si 1.071 2.929 10 H -0.287 1.287 11 H -0.274 1.274 12 H -0.241 1.241 13 N -0.699 5.699 14 C 0.516 3.484 15 O -0.571 6.571 16 C -0.109 4.109 17 H 0.146 0.854 18 C -0.144 4.144 19 C 0.518 3.482 20 O -0.565 6.565 21 N -0.610 5.610 22 C 0.157 3.843 23 C -0.132 4.132 24 C -0.103 4.103 25 C -0.096 4.096 26 C -0.143 4.143 27 C -0.103 4.103 28 C -0.128 4.128 29 C 0.122 3.878 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.257 0.743 36 H 0.403 0.597 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.049 0.951 52 H 0.076 0.924 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.880 9.669 14.304 27.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.147 3.853 4 H 0.041 0.959 5 C -0.648 4.648 6 H 0.058 0.942 7 C -0.209 4.209 8 N -0.566 5.566 9 Si 0.893 3.107 10 H -0.213 1.213 11 H -0.200 1.200 12 H -0.166 1.166 13 N -0.347 5.347 14 C 0.302 3.698 15 O -0.451 6.451 16 C -0.130 4.130 17 H 0.164 0.836 18 C -0.185 4.185 19 C 0.306 3.694 20 O -0.444 6.444 21 N -0.342 5.342 22 C 0.055 3.945 23 C -0.171 4.171 24 C -0.141 4.141 25 C -0.114 4.114 26 C -0.200 4.200 27 C -0.141 4.141 28 C -0.166 4.166 29 C 0.000 4.000 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.238 0.762 37 H 0.142 0.858 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.089 0.911 51 H 0.067 0.933 52 H 0.094 0.906 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.231 9.646 12.425 27.233 hybrid contribution 1.431 0.648 1.731 2.337 sum -20.800 10.294 14.156 27.184 Atomic orbital electron populations 1.21767 0.95197 1.00395 1.01671 1.22251 0.95648 0.98230 1.01462 1.18739 0.93216 0.89803 0.83558 0.95887 1.22304 0.91755 1.47758 1.03024 0.94218 1.26806 0.97703 0.92283 1.04068 1.70980 1.08146 1.43489 1.34016 0.83731 0.75220 0.78622 0.73087 1.21294 1.20017 1.16562 1.46069 1.15532 1.55951 1.17153 1.20482 0.81685 0.78254 0.89378 1.90672 1.51484 1.60747 1.42242 1.22199 0.96092 0.97737 0.96990 0.83643 1.22348 0.98603 0.93980 1.03526 1.20951 0.84145 0.85602 0.78709 1.90674 1.79442 1.31835 1.42494 1.48557 1.06144 1.26858 1.52646 1.21195 0.88007 0.90753 0.94528 1.21885 0.99704 0.95434 1.00064 1.21517 0.97522 0.99731 0.95348 1.21161 0.98886 0.96183 0.95188 1.21786 0.97526 0.99500 1.01195 1.21522 0.97638 0.94284 1.00678 1.21862 0.99583 1.00956 0.94217 1.22017 0.96765 0.84710 0.96543 0.92716 0.92630 0.94122 0.92653 0.92653 0.93350 0.76194 0.85761 0.88590 0.87075 0.93336 0.92358 0.90210 0.91637 0.93027 0.92383 0.92705 0.91675 0.90144 0.91161 0.91080 0.93265 0.90558 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 8.53 71.98 0.61 -4.01 16 2 C -0.14 -5.54 5.27 30.59 0.16 -5.38 16 3 C 0.25 11.06 1.82 44.24 0.08 11.14 16 4 H 0.02 1.12 6.26 -2.39 -0.01 1.11 16 5 C -0.61 -31.91 9.01 25.60 0.23 -31.68 16 6 H 0.04 2.20 7.96 -2.91 -0.02 2.18 16 7 C -0.01 -0.45 5.32 84.66 0.45 0.00 16 8 N -0.93 -55.60 13.69 21.45 0.29 -55.30 16 9 Si 1.07 49.11 26.27 68.60 1.80 50.91 16 10 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.24 -9.93 5.67 99.48 0.56 -9.36 16 13 N -0.70 -24.38 4.98 -446.11 -2.22 -26.60 16 14 C 0.52 15.82 5.67 87.66 0.50 16.31 16 15 O -0.57 -20.93 12.71 -3.03 -0.04 -20.97 16 16 C -0.11 -2.28 3.54 -10.48 -0.04 -2.32 16 17 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 18 C -0.14 -3.31 6.37 30.59 0.19 -3.12 16 19 C 0.52 13.58 7.41 87.89 0.65 14.23 16 20 O -0.56 -18.69 15.11 -3.03 -0.05 -18.74 16 21 N -0.61 -12.85 2.83 -794.05 -2.25 -15.10 16 22 C 0.16 2.79 2.75 44.99 0.12 2.92 16 23 C -0.13 -2.61 5.21 30.59 0.16 -2.45 16 24 C -0.10 -1.49 5.20 30.60 0.16 -1.33 16 25 C -0.10 -1.34 2.72 -10.79 -0.03 -1.37 16 26 C -0.14 -1.50 9.19 71.98 0.66 -0.84 16 27 C -0.10 -1.32 5.20 30.59 0.16 -1.16 16 28 C -0.13 -2.20 5.21 30.59 0.16 -2.04 16 29 C 0.12 2.38 6.62 86.83 0.57 2.95 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.84 5.63 -2.39 -0.01 1.82 16 32 H 0.04 1.50 7.88 -2.39 -0.02 1.48 16 33 H 0.06 2.38 4.74 -2.39 -0.01 2.37 16 34 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.26 15.41 8.73 -92.71 -0.81 14.60 16 36 H 0.40 12.55 8.53 -92.71 -0.79 11.76 16 37 H 0.12 2.44 8.14 -2.39 -0.02 2.43 16 38 H 0.10 2.53 7.89 -2.39 -0.02 2.51 16 39 H 0.11 1.48 8.07 -2.38 -0.02 1.46 16 40 H 0.05 1.27 6.77 -2.38 -0.02 1.25 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.05 1.17 6.80 -2.38 -0.02 1.15 16 52 H 0.08 1.79 7.06 -2.39 -0.02 1.77 16 53 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -68.06 398.94 2.27 -65.79 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.08 Total: 28.17 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 4.81 Total: -8.15 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -4.17 Total: -97.01 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.08 Total: -39.71 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.80 Total: 50.91 kcal Total: -68.06 2.27 -65.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183838023.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.561 kcal (2) G-P(sol) polarization free energy of solvation -68.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds