Wall clock time and date at job start Tue Mar 31 2020 20:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00025 * 2 1 4 4 N 1.46498 * 109.47231 * 124.99592 * 3 2 1 5 5 C 1.46496 * 120.00564 * 269.80904 * 4 3 2 6 6 C 1.50693 * 109.47103 * 264.69519 * 5 4 3 7 7 H 1.08002 * 120.00483 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99833 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00109 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99888 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47166 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46836 * 120.00625 * 10 8 6 13 13 H 1.48504 * 109.46912 * 240.00336 * 10 8 6 14 14 C 1.34781 * 119.99683 * 89.80797 * 4 3 2 15 15 O 1.21283 * 119.99703 * 5.02212 * 14 4 3 16 16 C 1.50693 * 119.99980 * 184.74040 * 14 4 3 17 17 H 1.08994 * 109.50314 * 308.37457 * 16 14 4 18 18 C 1.53043 * 109.49627 * 68.47195 * 16 14 4 19 19 C 1.53035 * 109.53814 * 181.31484 * 18 16 14 20 20 C 1.53196 * 109.31306 * 298.63383 * 19 18 16 21 21 N 1.46916 * 108.77559 * 54.63650 * 20 19 18 22 22 C 1.34781 * 120.63336 * 126.41564 * 21 20 19 23 23 O 1.21276 * 119.99499 * 3.36005 * 22 21 20 24 24 C 1.50701 * 119.99990 * 183.36486 * 22 21 20 25 25 H 1.08996 * 109.47244 * 40.77859 * 24 22 21 26 26 C 1.53000 * 109.46980 * 280.78076 * 24 22 21 27 27 C 1.53004 * 109.46888 * 160.78390 * 24 22 21 28 28 C 1.53001 * 109.46907 * 184.99654 * 27 24 22 29 29 C 1.46932 * 118.73866 * 306.38834 * 21 20 19 30 30 H 1.08006 * 119.99242 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.99959 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.00342 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46748 * 4.99846 * 3 2 1 34 34 H 1.09001 * 109.47126 * 245.00413 * 3 2 1 35 35 H 1.09003 * 109.47063 * 24.69275 * 5 4 3 36 36 H 1.08995 * 109.47397 * 144.69212 * 5 4 3 37 37 H 0.96997 * 119.99687 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.45813 * 301.33242 * 18 16 14 39 39 H 1.09006 * 109.46153 * 61.29281 * 18 16 14 40 40 H 1.09003 * 109.49925 * 178.68209 * 19 18 16 41 41 H 1.09000 * 109.49823 * 58.58328 * 19 18 16 42 42 H 1.08995 * 109.58541 * 294.84371 * 20 19 18 43 43 H 1.09007 * 109.58491 * 174.42686 * 20 19 18 44 44 H 1.08997 * 109.47382 * 172.93950 * 26 24 22 45 45 H 1.09002 * 109.47306 * 292.93916 * 26 24 22 46 46 H 1.09001 * 109.47047 * 52.93858 * 26 24 22 47 47 H 1.08995 * 109.47114 * 304.99880 * 27 24 22 48 48 H 1.08996 * 109.47041 * 64.99706 * 27 24 22 49 49 H 1.08996 * 109.46898 * 300.00004 * 28 27 24 50 50 H 1.09004 * 109.46887 * 60.00271 * 28 27 24 51 51 H 1.08999 * 109.46891 * 179.97438 * 28 27 24 52 52 H 1.09001 * 109.58706 * 293.82359 * 29 21 20 53 53 H 1.08999 * 109.70444 * 173.46714 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5602 1.8689 2.4237 6 6 2.9663 3.3163 2.5280 7 1 3.4942 3.7892 1.7130 8 6 2.6630 4.0373 3.6635 9 7 2.0198 3.4616 4.6557 10 14 3.1671 5.8314 3.7931 11 1 3.8738 6.2379 2.5519 12 1 1.9572 6.6737 3.9719 13 1 4.0704 6.0088 4.9584 14 6 4.2485 0.8626 0.9835 15 8 4.6365 0.5027 -0.1078 16 6 5.1713 0.7910 2.1727 17 1 5.1944 1.7585 2.6742 18 6 4.6682 -0.2776 3.1460 19 6 5.5861 -0.3284 4.3694 20 6 7.0023 -0.7076 3.9249 21 7 7.4380 0.2314 2.8824 22 6 8.6003 0.9026 3.0049 23 8 9.3267 0.6892 3.9523 24 6 8.9972 1.9183 1.9647 25 1 8.1224 2.4984 1.6709 26 6 9.5664 1.1986 0.7404 27 6 10.0588 2.8547 2.5452 28 6 10.3711 3.9603 1.5347 29 6 6.5827 0.4245 1.7033 30 1 -0.5399 -0.9354 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 1.4762 1.7889 2.5051 36 1 3.0278 1.3014 3.2283 37 1 1.8068 3.9688 5.4546 38 1 3.6545 -0.0321 3.4625 39 1 4.6687 -1.2488 2.6510 40 1 5.2139 -1.0733 5.0728 41 1 5.6054 0.6494 4.8507 42 1 7.0007 -1.7218 3.5258 43 1 7.6805 -0.6488 4.7763 44 1 9.7366 1.9201 -0.0587 45 1 10.5097 0.7211 1.0056 46 1 8.8586 0.4419 0.4020 47 1 9.6853 3.3001 3.4673 48 1 10.9660 2.2888 2.7566 49 1 10.7446 3.5148 0.6127 50 1 9.4638 4.5262 1.3234 51 1 11.1271 4.6276 1.9485 52 1 6.5470 -0.4975 1.1229 53 1 6.9832 1.2291 1.0866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292291513.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:05 Heat of formation + Delta-G solvation = -68.317967 kcal Electronic energy + Delta-G solvation = -31373.310658 eV Core-core repulsion = 27437.841961 eV Total energy + Delta-G solvation = -3935.468696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.50305 -39.32524 -37.03770 -35.59989 -35.36946 -33.71396 -32.72479 -32.11022 -31.11059 -29.57094 -27.61749 -25.99101 -25.88167 -24.65061 -23.60085 -22.80572 -21.82541 -20.23744 -19.80011 -18.66966 -18.30094 -17.18125 -16.68703 -16.31539 -15.91594 -15.58089 -15.28987 -14.74111 -14.59751 -14.52989 -14.34358 -14.19697 -13.98061 -13.53469 -13.31780 -12.93984 -12.76938 -12.62797 -12.46686 -12.35989 -12.26094 -12.10503 -11.71671 -11.70402 -11.56549 -11.46930 -11.26268 -11.04886 -10.96790 -10.90984 -10.89516 -10.72594 -10.66253 -10.47245 -10.38705 -10.20144 -9.76089 -9.46285 -9.29302 -8.96959 -8.62633 -8.43116 -7.82157 -6.25647 -4.32845 2.48954 2.76355 3.08619 3.16761 3.24871 3.26958 3.31992 3.95299 4.27602 4.53330 4.74840 4.91588 4.93493 5.04880 5.08067 5.14295 5.20563 5.25568 5.32118 5.36739 5.42140 5.45541 5.48083 5.51066 5.59505 5.73306 5.75666 5.80302 5.85759 5.91145 5.94902 5.96005 6.01074 6.05921 6.06800 6.13154 6.24003 6.26146 6.32341 6.33400 6.36010 6.58072 6.65834 6.69877 6.85542 6.99394 7.18610 7.46193 7.52867 7.69465 7.98647 8.22609 8.30964 8.70812 8.90123 9.35219 10.80879 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.004513 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.382701 B = 6202.783406 C = 7490.716484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.141 3.859 4 N -0.588 5.588 5 C 0.227 3.773 6 C -0.540 4.540 7 H 0.061 0.939 8 C 0.068 3.932 9 N -0.888 5.888 10 Si 0.892 3.108 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.527 3.473 15 O -0.576 6.576 16 C -0.120 4.120 17 H 0.116 0.884 18 C -0.114 4.114 19 C -0.131 4.131 20 C 0.110 3.890 21 N -0.608 5.608 22 C 0.523 3.477 23 O -0.549 6.549 24 C -0.115 4.115 25 H 0.097 0.903 26 C -0.143 4.143 27 C -0.104 4.104 28 C -0.154 4.154 29 C 0.127 3.873 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.052 0.948 37 H 0.265 0.735 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.055 0.945 52 H 0.077 0.923 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 -5.845 -5.095 10.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.175 4.175 3 C 0.018 3.982 4 N -0.317 5.317 5 C 0.108 3.892 6 C -0.578 4.578 7 H 0.079 0.921 8 C -0.136 4.136 9 N -0.526 5.526 10 Si 0.720 3.280 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.207 1.207 14 C 0.315 3.685 15 O -0.458 6.458 16 C -0.142 4.142 17 H 0.134 0.866 18 C -0.152 4.152 19 C -0.169 4.169 20 C -0.012 4.012 21 N -0.341 5.341 22 C 0.312 3.688 23 O -0.427 6.427 24 C -0.136 4.136 25 H 0.115 0.885 26 C -0.201 4.201 27 C -0.142 4.142 28 C -0.211 4.211 29 C 0.004 3.996 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.074 0.926 52 H 0.095 0.905 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.730 -6.092 -4.946 11.015 hybrid contribution -0.211 1.101 0.270 1.154 sum 7.518 -4.990 -4.676 10.164 Atomic orbital electron populations 1.23775 0.95792 1.01573 1.01831 1.23376 0.96064 0.99259 0.98772 1.20430 0.92265 0.94674 0.90798 1.48186 1.10663 1.59112 1.13783 1.19723 0.96687 0.94082 0.78720 1.21513 1.38200 0.95707 1.02392 0.92114 1.24912 0.94700 0.98525 0.95447 1.69918 1.39495 1.36825 1.06386 0.86525 0.78512 0.84711 0.78297 1.19614 1.20798 1.20745 1.20225 0.82486 0.76581 0.89226 1.90590 1.75959 1.51582 1.27636 1.21592 0.93590 1.03086 0.95908 0.86569 1.21649 1.00974 0.97470 0.95063 1.21887 0.94050 1.03105 0.97830 1.21626 0.96176 0.91861 0.91532 1.48131 1.20726 1.43145 1.22048 1.20659 0.80364 0.81150 0.86638 1.90642 1.51756 1.66596 1.33685 1.21394 1.00676 0.96173 0.95374 0.88470 1.21814 1.01359 1.00645 0.96245 1.21343 0.98276 0.95970 0.98572 1.21835 1.01669 0.98356 0.99234 1.21606 0.89004 1.02825 0.86203 0.88891 0.88456 0.87879 0.90008 0.90017 0.94610 0.93086 0.92516 0.89154 0.92157 0.90574 0.90730 0.91789 0.89201 0.91211 0.92113 0.91897 0.91552 0.91186 0.92475 0.92494 0.92621 0.90460 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 14.32 29.01 0.42 -2.19 16 2 C -0.16 -2.40 9.85 -36.03 -0.35 -2.76 16 3 C 0.14 2.47 5.86 -5.19 -0.03 2.44 16 4 N -0.59 -11.50 2.45 -176.45 -0.43 -11.93 16 5 C 0.23 5.02 4.73 -5.20 -0.02 5.00 16 6 C -0.54 -13.30 8.74 -34.44 -0.30 -13.60 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -23.51 13.29 55.43 0.74 -22.78 16 10 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.53 10.02 6.91 -10.99 -0.08 9.95 16 15 O -0.58 -11.70 15.43 5.56 0.09 -11.62 16 16 C -0.12 -2.02 1.86 -91.65 -0.17 -2.20 16 17 H 0.12 2.24 7.21 -51.93 -0.37 1.86 16 18 C -0.11 -1.75 4.84 -26.69 -0.13 -1.87 16 19 C -0.13 -1.82 6.08 -26.61 -0.16 -1.98 16 20 C 0.11 1.50 6.42 -3.71 -0.02 1.48 16 21 N -0.61 -8.93 2.97 -172.76 -0.51 -9.44 16 22 C 0.52 8.10 6.87 -10.98 -0.08 8.02 16 23 O -0.55 -9.98 15.55 5.56 0.09 -9.89 16 24 C -0.11 -1.48 1.86 -91.77 -0.17 -1.65 16 25 H 0.10 1.26 6.76 -51.93 -0.35 0.91 16 26 C -0.14 -1.55 8.43 37.16 0.31 -1.24 16 27 C -0.10 -1.27 4.77 -26.73 -0.13 -1.39 16 28 C -0.15 -1.55 9.67 37.16 0.36 -1.19 16 29 C 0.13 1.88 4.19 -3.70 -0.02 1.86 16 30 H 0.09 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 32 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.08 1.42 7.72 -51.93 -0.40 1.02 16 34 H 0.08 1.44 7.36 -51.93 -0.38 1.05 16 35 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 36 H 0.05 1.14 4.24 -51.93 -0.22 0.92 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.09 1.54 5.34 -51.93 -0.28 1.26 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.29 7.02 -51.92 -0.36 0.92 16 44 H 0.07 0.65 6.92 -51.93 -0.36 0.29 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.69 6.88 -51.93 -0.36 0.34 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 49 H 0.06 0.51 6.73 -51.93 -0.35 0.16 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.08 1.14 7.84 -51.93 -0.41 0.73 16 53 H 0.09 1.30 5.05 -51.93 -0.26 1.04 16 LS Contribution 411.78 15.07 6.21 6.21 Total: -1.00 -28.42 411.78 -8.65 -37.06 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -9.13 Total: 7.08 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.67 Total: 0.31 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.21 Total: -44.15 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.17 Total: -21.51 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -28.42 -8.65 -37.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292291513.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.253 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds