Wall clock time and date at job start Tue Mar 31 2020 20:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00025 * 2 1 4 4 N 1.46498 * 109.47231 * 124.99592 * 3 2 1 5 5 C 1.46496 * 120.00564 * 269.80904 * 4 3 2 6 6 C 1.50693 * 109.47103 * 264.69519 * 5 4 3 7 7 H 1.08002 * 120.00483 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99833 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00109 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99888 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47166 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46836 * 120.00625 * 10 8 6 13 13 H 1.48504 * 109.46912 * 240.00336 * 10 8 6 14 14 C 1.34781 * 119.99683 * 89.80797 * 4 3 2 15 15 O 1.21283 * 119.99703 * 5.02212 * 14 4 3 16 16 C 1.50693 * 119.99980 * 184.74040 * 14 4 3 17 17 H 1.08994 * 109.50314 * 308.37457 * 16 14 4 18 18 C 1.53043 * 109.49627 * 68.47195 * 16 14 4 19 19 C 1.53035 * 109.53814 * 181.31484 * 18 16 14 20 20 C 1.53196 * 109.31306 * 298.63383 * 19 18 16 21 21 N 1.46916 * 108.77559 * 54.63650 * 20 19 18 22 22 C 1.34781 * 120.63336 * 126.41564 * 21 20 19 23 23 O 1.21276 * 119.99499 * 3.36005 * 22 21 20 24 24 C 1.50701 * 119.99990 * 183.36486 * 22 21 20 25 25 H 1.08996 * 109.47244 * 40.77859 * 24 22 21 26 26 C 1.53000 * 109.46980 * 280.78076 * 24 22 21 27 27 C 1.53004 * 109.46888 * 160.78390 * 24 22 21 28 28 C 1.53001 * 109.46907 * 184.99654 * 27 24 22 29 29 C 1.46932 * 118.73866 * 306.38834 * 21 20 19 30 30 H 1.08006 * 119.99242 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.99959 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.00342 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46748 * 4.99846 * 3 2 1 34 34 H 1.09001 * 109.47126 * 245.00413 * 3 2 1 35 35 H 1.09003 * 109.47063 * 24.69275 * 5 4 3 36 36 H 1.08995 * 109.47397 * 144.69212 * 5 4 3 37 37 H 0.96997 * 119.99687 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.45813 * 301.33242 * 18 16 14 39 39 H 1.09006 * 109.46153 * 61.29281 * 18 16 14 40 40 H 1.09003 * 109.49925 * 178.68209 * 19 18 16 41 41 H 1.09000 * 109.49823 * 58.58328 * 19 18 16 42 42 H 1.08995 * 109.58541 * 294.84371 * 20 19 18 43 43 H 1.09007 * 109.58491 * 174.42686 * 20 19 18 44 44 H 1.08997 * 109.47382 * 172.93950 * 26 24 22 45 45 H 1.09002 * 109.47306 * 292.93916 * 26 24 22 46 46 H 1.09001 * 109.47047 * 52.93858 * 26 24 22 47 47 H 1.08995 * 109.47114 * 304.99880 * 27 24 22 48 48 H 1.08996 * 109.47041 * 64.99706 * 27 24 22 49 49 H 1.08996 * 109.46898 * 300.00004 * 28 27 24 50 50 H 1.09004 * 109.46887 * 60.00271 * 28 27 24 51 51 H 1.08999 * 109.46891 * 179.97438 * 28 27 24 52 52 H 1.09001 * 109.58706 * 293.82359 * 29 21 20 53 53 H 1.08999 * 109.70444 * 173.46714 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5602 1.8689 2.4237 6 6 2.9663 3.3163 2.5280 7 1 3.4942 3.7892 1.7130 8 6 2.6630 4.0373 3.6635 9 7 2.0198 3.4616 4.6557 10 14 3.1671 5.8314 3.7931 11 1 3.8738 6.2379 2.5519 12 1 1.9572 6.6737 3.9719 13 1 4.0704 6.0088 4.9584 14 6 4.2485 0.8626 0.9835 15 8 4.6365 0.5027 -0.1078 16 6 5.1713 0.7910 2.1727 17 1 5.1944 1.7585 2.6742 18 6 4.6682 -0.2776 3.1460 19 6 5.5861 -0.3284 4.3694 20 6 7.0023 -0.7076 3.9249 21 7 7.4380 0.2314 2.8824 22 6 8.6003 0.9026 3.0049 23 8 9.3267 0.6892 3.9523 24 6 8.9972 1.9183 1.9647 25 1 8.1224 2.4984 1.6709 26 6 9.5664 1.1986 0.7404 27 6 10.0588 2.8547 2.5452 28 6 10.3711 3.9603 1.5347 29 6 6.5827 0.4245 1.7033 30 1 -0.5399 -0.9354 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 1.4762 1.7889 2.5051 36 1 3.0278 1.3014 3.2283 37 1 1.8068 3.9688 5.4546 38 1 3.6545 -0.0321 3.4625 39 1 4.6687 -1.2488 2.6510 40 1 5.2139 -1.0733 5.0728 41 1 5.6054 0.6494 4.8507 42 1 7.0007 -1.7218 3.5258 43 1 7.6805 -0.6488 4.7763 44 1 9.7366 1.9201 -0.0587 45 1 10.5097 0.7211 1.0056 46 1 8.8586 0.4419 0.4020 47 1 9.6853 3.3001 3.4673 48 1 10.9660 2.2888 2.7566 49 1 10.7446 3.5148 0.6127 50 1 9.4638 4.5262 1.3234 51 1 11.1271 4.6276 1.9485 52 1 6.5470 -0.4975 1.1229 53 1 6.9832 1.2291 1.0866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292291513.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:03 Heat of formation + Delta-G solvation = -81.753880 kcal Electronic energy + Delta-G solvation = -31373.893283 eV Core-core repulsion = 27437.841961 eV Total energy + Delta-G solvation = -3936.051321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.79345 -40.74500 -38.30645 -37.11617 -36.46106 -35.23683 -34.24830 -33.55443 -32.34210 -30.50952 -29.38729 -27.39202 -27.00990 -25.70008 -25.21935 -24.25372 -23.00234 -21.36807 -21.03953 -19.86139 -19.78087 -18.69331 -18.26597 -17.76824 -17.39634 -16.86161 -16.47656 -16.30300 -16.14087 -15.73849 -15.62577 -15.38926 -15.21612 -14.69987 -14.50983 -14.32356 -14.06938 -13.99934 -13.82197 -13.63562 -13.46747 -13.34830 -13.04669 -12.93798 -12.84320 -12.68665 -12.62512 -12.55775 -12.43337 -12.24244 -12.12542 -12.08201 -11.86819 -11.74530 -11.69283 -11.60202 -11.47443 -10.75385 -10.66692 -10.57489 -10.23411 -9.69085 -9.45720 -8.21288 -6.33920 1.29582 1.36676 1.41562 1.49775 1.54555 1.73936 1.92781 2.35620 2.54156 3.09552 3.37057 3.66735 3.73906 3.79779 3.81887 3.96328 4.00327 4.08863 4.15921 4.22965 4.25468 4.36064 4.48066 4.50645 4.54338 4.57746 4.63913 4.70332 4.74919 4.80986 4.81653 4.84125 4.91038 4.95574 4.97809 5.02288 5.04251 5.06118 5.08419 5.16105 5.32001 5.33340 5.41782 5.43384 5.50492 5.63523 5.69095 5.75713 5.94830 6.07910 6.31919 6.55697 6.82330 7.09431 7.28782 7.40656 8.83875 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.004513 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.382701 B = 6202.783406 C = 7490.716484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.177 4.177 3 C 0.139 3.861 4 N -0.592 5.592 5 C 0.243 3.757 6 C -0.543 4.543 7 H 0.050 0.950 8 C 0.027 3.973 9 N -0.915 5.915 10 Si 0.944 3.056 11 H -0.270 1.270 12 H -0.278 1.278 13 H -0.281 1.281 14 C 0.526 3.474 15 O -0.587 6.587 16 C -0.115 4.115 17 H 0.089 0.911 18 C -0.108 4.108 19 C -0.122 4.122 20 C 0.110 3.890 21 N -0.608 5.608 22 C 0.517 3.483 23 O -0.580 6.580 24 C -0.115 4.115 25 H 0.095 0.905 26 C -0.138 4.138 27 C -0.102 4.102 28 C -0.149 4.149 29 C 0.137 3.863 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.018 0.982 36 H 0.050 0.950 37 H 0.267 0.733 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.046 0.954 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.053 0.947 51 H 0.064 0.936 52 H 0.086 0.914 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 -6.356 -6.100 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.196 4.196 3 C 0.017 3.983 4 N -0.321 5.321 5 C 0.123 3.877 6 C -0.582 4.582 7 H 0.068 0.932 8 C -0.173 4.173 9 N -0.554 5.554 10 Si 0.770 3.230 11 H -0.194 1.194 12 H -0.204 1.204 13 H -0.207 1.207 14 C 0.314 3.686 15 O -0.470 6.470 16 C -0.137 4.137 17 H 0.107 0.893 18 C -0.145 4.145 19 C -0.160 4.160 20 C -0.012 4.012 21 N -0.339 5.339 22 C 0.307 3.693 23 O -0.460 6.460 24 C -0.136 4.136 25 H 0.113 0.887 26 C -0.195 4.195 27 C -0.140 4.140 28 C -0.206 4.206 29 C 0.014 3.986 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.072 0.928 51 H 0.083 0.917 52 H 0.104 0.896 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.977 -6.606 -5.975 11.957 hybrid contribution -0.368 1.242 0.564 1.413 sum 7.609 -5.363 -5.412 10.768 Atomic orbital electron populations 1.24017 0.95141 1.02941 0.98590 1.23193 0.96650 0.98035 1.01708 1.20510 0.92028 0.95969 0.89798 1.48171 1.11400 1.59078 1.13457 1.19368 0.95316 0.93011 0.80014 1.21692 1.37603 0.96954 1.01920 0.93156 1.25517 0.94834 1.01689 0.95308 1.69990 1.40546 1.38043 1.06825 0.85706 0.78174 0.80974 0.78097 1.19406 1.20411 1.20737 1.20512 0.82393 0.76077 0.89595 1.90576 1.76062 1.52138 1.28191 1.21535 0.94584 1.02335 0.95265 0.89266 1.21583 1.00023 0.97614 0.95293 1.21819 0.94187 1.02511 0.97484 1.21712 0.95450 0.92768 0.91274 1.48212 1.20471 1.43092 1.22173 1.21169 0.80171 0.81253 0.86713 1.90622 1.52725 1.67670 1.35019 1.21458 1.00878 0.95711 0.95516 0.88711 1.21804 1.01227 1.00892 0.95595 1.21321 0.97762 0.96423 0.98457 1.21807 1.01861 0.97700 0.99220 1.21521 0.87623 1.03334 0.86161 0.86418 0.88096 0.87891 0.90431 0.90417 0.96407 0.93209 0.92432 0.91052 0.90404 0.88151 0.93268 0.89441 0.89911 0.89298 0.91823 0.92032 0.93492 0.91532 0.90933 0.92810 0.91694 0.89588 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 14.32 67.78 0.97 -3.30 16 2 C -0.18 -5.29 9.85 25.64 0.25 -5.04 16 3 C 0.14 4.87 5.86 85.63 0.50 5.37 16 4 N -0.59 -23.29 2.45 -830.54 -2.04 -25.33 16 5 C 0.24 10.95 4.73 85.63 0.41 11.35 16 6 C -0.54 -27.12 8.74 25.60 0.22 -26.90 16 7 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 8 C 0.03 1.39 5.46 84.66 0.46 1.86 16 9 N -0.91 -48.86 13.29 21.45 0.28 -48.57 16 10 Si 0.94 41.16 29.54 68.60 2.03 43.19 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 14 C 0.53 19.91 6.91 87.65 0.61 20.51 16 15 O -0.59 -23.43 15.43 -3.04 -0.05 -23.48 16 16 C -0.12 -3.88 1.86 -11.46 -0.02 -3.91 16 17 H 0.09 3.53 7.21 -2.39 -0.02 3.51 16 18 C -0.11 -3.23 4.84 30.62 0.15 -3.09 16 19 C -0.12 -3.32 6.08 30.67 0.19 -3.13 16 20 C 0.11 2.88 6.42 86.37 0.55 3.43 16 21 N -0.61 -17.47 2.97 -818.89 -2.43 -19.91 16 22 C 0.52 15.89 6.87 87.66 0.60 16.49 16 23 O -0.58 -21.22 15.55 -3.02 -0.05 -21.26 16 24 C -0.11 -2.86 1.86 -11.54 -0.02 -2.89 16 25 H 0.09 2.41 6.76 -2.39 -0.02 2.40 16 26 C -0.14 -2.74 8.43 71.98 0.61 -2.13 16 27 C -0.10 -2.44 4.77 30.60 0.15 -2.29 16 28 C -0.15 -2.77 9.67 71.98 0.70 -2.08 16 29 C 0.14 3.93 4.19 86.36 0.36 4.29 16 30 H 0.12 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.10 2.48 7.84 -2.91 -0.02 2.46 16 32 H 0.10 3.09 8.06 -2.91 -0.02 3.06 16 33 H 0.08 2.71 7.72 -2.39 -0.02 2.69 16 34 H 0.08 2.73 7.36 -2.39 -0.02 2.72 16 35 H 0.02 0.86 8.03 -2.39 -0.02 0.84 16 36 H 0.05 2.28 4.24 -2.39 -0.01 2.27 16 37 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 38 H 0.07 2.44 5.34 -2.39 -0.01 2.43 16 39 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.08 2.33 7.02 -2.38 -0.02 2.31 16 44 H 0.09 1.43 6.92 -2.39 -0.02 1.41 16 45 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 46 H 0.06 1.24 6.88 -2.39 -0.02 1.23 16 47 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.07 1.63 8.06 -2.39 -0.02 1.61 16 49 H 0.07 1.13 6.73 -2.39 -0.02 1.11 16 50 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.09 2.38 7.84 -2.39 -0.02 2.36 16 53 H 0.09 2.63 5.05 -2.39 -0.01 2.62 16 Total: -1.00 -60.57 411.78 5.30 -55.27 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.88 Total: 31.54 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 6.68 Total: 8.56 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -4.19 Total: -93.81 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -0.09 Total: -44.74 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -60.57 5.30 -55.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292291513.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.486 kcal (2) G-P(sol) polarization free energy of solvation -60.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds