Wall clock time and date at job start Tue Mar 31 2020 20:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99890 * 2 1 4 4 N 1.46502 * 109.47048 * 125.00241 * 3 2 1 5 5 C 1.46495 * 120.00210 * 92.16306 * 4 3 2 6 6 C 1.50706 * 109.47144 * 95.27717 * 5 4 3 7 7 H 1.08001 * 119.99589 * 359.97438 * 6 5 4 8 8 C 1.37869 * 119.99914 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00305 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99896 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46948 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.46937 * 239.99804 * 10 8 6 13 13 H 1.48501 * 109.47349 * 120.00003 * 10 8 6 14 14 C 1.34779 * 119.99814 * 272.16541 * 4 3 2 15 15 O 1.21287 * 119.99780 * 4.88418 * 14 4 3 16 16 C 1.50696 * 120.00204 * 184.88463 * 14 4 3 17 17 H 1.09007 * 109.49536 * 41.64249 * 16 14 4 18 18 C 1.53040 * 109.49734 * 281.58062 * 16 14 4 19 19 C 1.53044 * 109.53696 * 178.68478 * 18 16 14 20 20 C 1.53183 * 109.31678 * 61.36263 * 19 18 16 21 21 N 1.46928 * 108.77558 * 305.36643 * 20 19 18 22 22 C 1.34780 * 120.63116 * 233.60619 * 21 20 19 23 23 O 1.21276 * 119.99853 * 183.71094 * 22 21 20 24 24 C 1.50700 * 119.99694 * 3.71976 * 22 21 20 25 25 H 1.08999 * 109.46932 * 325.14424 * 24 22 21 26 26 C 1.53005 * 109.46537 * 205.15390 * 24 22 21 27 27 C 1.52995 * 109.47416 * 85.15119 * 24 22 21 28 28 C 1.52992 * 109.47098 * 184.99682 * 27 24 22 29 29 C 1.46935 * 118.76365 * 53.58909 * 21 20 19 30 30 H 1.08002 * 119.99869 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99869 * 359.97438 * 1 2 3 32 32 H 1.08000 * 119.99869 * 180.02562 * 2 1 3 33 33 H 1.08990 * 109.47467 * 4.99650 * 3 2 1 34 34 H 1.09001 * 109.47073 * 244.99743 * 3 2 1 35 35 H 1.09002 * 109.47180 * 335.27233 * 5 4 3 36 36 H 1.09000 * 109.47316 * 215.27581 * 5 4 3 37 37 H 0.96996 * 119.99678 * 0.02562 * 9 8 6 38 38 H 1.08999 * 109.46219 * 298.69925 * 18 16 14 39 39 H 1.08995 * 109.46261 * 58.67384 * 18 16 14 40 40 H 1.08999 * 109.49637 * 181.31794 * 19 18 16 41 41 H 1.09005 * 109.49382 * 301.41097 * 19 18 16 42 42 H 1.08999 * 109.58340 * 65.15080 * 20 19 18 43 43 H 1.08995 * 109.58929 * 185.58014 * 20 19 18 44 44 H 1.09000 * 109.47123 * 295.74341 * 26 24 22 45 45 H 1.08997 * 109.47576 * 55.74546 * 26 24 22 46 46 H 1.08999 * 109.46662 * 175.74917 * 26 24 22 47 47 H 1.08998 * 109.47308 * 304.99705 * 27 24 22 48 48 H 1.08997 * 109.47059 * 64.99706 * 27 24 22 49 49 H 1.09005 * 109.47246 * 179.97438 * 28 27 24 50 50 H 1.08998 * 109.47411 * 299.99762 * 28 27 24 51 51 H 1.08997 * 109.47145 * 60.00077 * 28 27 24 52 52 H 1.09005 * 109.61381 * 186.64610 * 29 21 20 53 53 H 1.08991 * 109.56474 * 66.21570 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3730 0.8697 0.9569 6 6 5.2652 2.0492 0.6671 7 1 4.8465 3.0436 0.6176 8 6 6.6155 1.8588 0.4644 9 7 7.1251 0.6478 0.5242 10 14 7.7213 3.3207 0.1045 11 1 6.9092 4.5640 0.0907 12 1 8.3684 3.1379 -1.2196 13 1 8.7652 3.4225 1.1558 14 6 2.5808 1.7817 2.3329 15 8 1.4175 2.0807 2.5013 16 6 3.5643 1.9131 3.4671 17 1 4.4996 2.3281 3.0913 18 6 3.8263 0.5347 4.0783 19 6 4.8499 0.6623 5.2089 20 6 4.2868 1.5765 6.3014 21 7 3.8971 2.8559 5.6930 22 6 4.3658 4.0205 6.1834 23 8 3.9845 5.0726 5.7158 24 6 5.3640 4.0153 7.3125 25 1 5.1484 3.1843 7.9840 26 6 5.2675 5.3329 8.0843 27 6 6.7759 3.8591 6.7443 28 6 7.7767 3.7288 7.8942 29 6 2.9869 2.8422 4.5396 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3587 2.1316 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 4.4181 0.1669 0.1249 36 1 4.7087 0.3755 1.8685 37 1 6.5509 -0.1113 0.7107 38 1 2.8951 0.1306 4.4755 39 1 4.2146 -0.1350 3.3110 40 1 5.0535 -0.3230 5.6282 41 1 5.7731 1.0894 4.8172 42 1 3.4144 1.1076 6.7565 43 1 5.0488 1.7503 7.0611 44 1 5.5563 6.1577 7.4327 45 1 4.2427 5.4805 8.4247 46 1 5.9351 5.2992 8.9453 47 1 6.8201 2.9659 6.1212 48 1 7.0246 4.7339 6.1436 49 1 8.7826 3.6170 7.4894 50 1 7.7326 4.6220 8.5173 51 1 7.5280 2.8540 8.4949 52 1 2.8917 3.8505 4.1366 53 1 2.0084 2.4770 4.8511 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292291519.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:11 Heat of formation + Delta-G solvation = -88.407589 kcal Electronic energy + Delta-G solvation = -31400.844555 eV Core-core repulsion = 27464.504707 eV Total energy + Delta-G solvation = -3936.339848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.83095 -40.83653 -38.35456 -37.27338 -36.54235 -35.52896 -34.28398 -33.55976 -32.27650 -30.55006 -28.97432 -27.75083 -26.92537 -25.81536 -25.11243 -24.36332 -22.78025 -21.86569 -20.98251 -20.20278 -19.70128 -19.02989 -18.45262 -18.05023 -17.22383 -16.91228 -16.42309 -16.30221 -15.83397 -15.76318 -15.63756 -15.29718 -15.22057 -14.94938 -14.65278 -14.49395 -14.21660 -13.96816 -13.87363 -13.79340 -13.65462 -13.38418 -13.30782 -13.06223 -12.75039 -12.68706 -12.60576 -12.46136 -12.32642 -12.31384 -12.09457 -12.05464 -11.92087 -11.69691 -11.61343 -11.56596 -11.21862 -10.91541 -10.68855 -10.58569 -10.33133 -9.71734 -9.54993 -8.65962 -6.43204 1.20082 1.48361 1.50501 1.54017 1.61981 1.72555 1.90648 2.37695 2.49100 3.09227 3.40511 3.52517 3.74237 3.78034 3.86211 3.91164 3.95825 3.99114 4.02403 4.13696 4.24661 4.32821 4.42183 4.46672 4.50122 4.56481 4.59583 4.63488 4.66440 4.68729 4.72227 4.75337 4.76996 4.87887 4.95127 4.98072 5.03185 5.04232 5.15503 5.16380 5.20813 5.33302 5.34293 5.43146 5.49196 5.56715 5.59174 5.77038 5.80468 6.07548 6.37565 6.46410 6.58100 7.10797 7.17816 7.32845 8.69402 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009184 B = 0.004579 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.055321 B = 6113.203762 C = 7944.156841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.182 4.182 3 C 0.141 3.859 4 N -0.591 5.591 5 C 0.235 3.765 6 C -0.619 4.619 7 H 0.033 0.967 8 C -0.008 4.008 9 N -0.921 5.921 10 Si 1.102 2.898 11 H -0.289 1.289 12 H -0.274 1.274 13 H -0.275 1.275 14 C 0.522 3.478 15 O -0.587 6.587 16 C -0.112 4.112 17 H 0.085 0.915 18 C -0.104 4.104 19 C -0.126 4.126 20 C 0.101 3.899 21 N -0.608 5.608 22 C 0.507 3.493 23 O -0.592 6.592 24 C -0.101 4.101 25 H 0.128 0.872 26 C -0.131 4.131 27 C -0.116 4.116 28 C -0.144 4.144 29 C 0.144 3.856 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.017 0.983 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.055 0.945 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.042 0.958 45 H 0.051 0.949 46 H 0.095 0.905 47 H 0.063 0.937 48 H 0.046 0.954 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.076 0.924 52 H 0.055 0.945 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.082 -2.642 15.249 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.201 4.201 3 C 0.018 3.982 4 N -0.320 5.320 5 C 0.114 3.886 6 C -0.657 4.657 7 H 0.051 0.949 8 C -0.210 4.210 9 N -0.557 5.557 10 Si 0.926 3.074 11 H -0.215 1.215 12 H -0.200 1.200 13 H -0.200 1.200 14 C 0.310 3.690 15 O -0.470 6.470 16 C -0.134 4.134 17 H 0.103 0.897 18 C -0.142 4.142 19 C -0.164 4.164 20 C -0.020 4.020 21 N -0.340 5.340 22 C 0.297 3.703 23 O -0.473 6.473 24 C -0.121 4.121 25 H 0.145 0.855 26 C -0.189 4.189 27 C -0.154 4.154 28 C -0.201 4.201 29 C 0.020 3.980 30 H 0.139 0.861 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.138 0.862 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.114 0.886 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.086 0.914 51 H 0.095 0.905 52 H 0.074 0.926 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.296 -1.523 14.755 14.890 hybrid contribution -1.695 -0.215 -0.798 1.885 sum -2.990 -1.738 13.957 14.379 Atomic orbital electron populations 1.23971 0.95146 1.02715 0.98021 1.23193 0.96767 0.97907 1.02191 1.20511 0.92030 0.96313 0.89299 1.48043 1.12724 1.61995 1.09239 1.19410 0.77458 0.94654 0.97082 1.22476 0.95511 0.94098 1.53643 0.94866 1.26736 0.97744 1.03187 0.93311 1.70866 1.39268 0.99268 1.46336 0.83074 0.74540 0.72019 0.77751 1.21500 1.19988 1.20003 1.20673 0.88309 0.75721 0.84271 1.90569 1.19834 1.52921 1.83645 1.21527 0.98665 0.99694 0.93502 0.89654 1.21514 1.00724 0.93178 0.98735 1.21902 0.97534 1.01796 0.95188 1.22189 1.02075 0.81918 0.95811 1.48276 1.47042 1.07676 1.31040 1.21639 0.81471 0.82474 0.84687 1.90654 1.61097 1.32733 1.62768 1.21466 0.93473 1.02625 0.94573 0.85471 1.21679 1.02401 0.94778 1.00039 1.21499 0.92649 1.01849 0.99419 1.21770 0.97852 1.03241 0.97204 1.21024 0.92544 0.98819 0.85641 0.86064 0.88700 0.87200 0.91401 0.90169 0.96471 0.94112 0.92669 0.90522 0.91780 0.86915 0.92638 0.88847 0.86244 0.93883 0.93014 0.88632 0.91871 0.93555 0.92373 0.91410 0.90504 0.92623 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.45 14.32 67.78 0.97 -3.48 16 2 C -0.18 -5.88 9.83 25.64 0.25 -5.63 16 3 C 0.14 5.42 5.76 85.63 0.49 5.91 16 4 N -0.59 -25.47 2.46 -830.51 -2.04 -27.51 16 5 C 0.23 10.96 4.15 85.64 0.36 11.32 16 6 C -0.62 -32.72 8.18 25.60 0.21 -32.51 16 7 H 0.03 1.88 7.81 -2.91 -0.02 1.85 16 8 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 9 N -0.92 -50.77 13.65 21.45 0.29 -50.48 16 10 Si 1.10 49.12 29.90 68.60 2.05 51.17 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 14 C 0.52 22.44 6.80 87.66 0.60 23.03 16 15 O -0.59 -26.98 15.58 -3.05 -0.05 -27.03 16 16 C -0.11 -4.27 1.87 -11.46 -0.02 -4.29 16 17 H 0.09 3.86 6.58 -2.38 -0.02 3.84 16 18 C -0.10 -3.13 4.91 30.62 0.15 -2.98 16 19 C -0.13 -2.88 6.08 30.67 0.19 -2.69 16 20 C 0.10 1.96 6.24 86.36 0.54 2.50 16 21 N -0.61 -17.80 2.97 -818.90 -2.43 -20.23 16 22 C 0.51 15.86 6.80 87.66 0.60 16.45 16 23 O -0.59 -24.42 15.61 -3.02 -0.05 -24.46 16 24 C -0.10 -2.08 1.89 -11.54 -0.02 -2.10 16 25 H 0.13 1.71 6.30 -2.39 -0.02 1.70 16 26 C -0.13 -2.60 8.30 71.98 0.60 -2.00 16 27 C -0.12 -2.40 5.23 30.59 0.16 -2.24 16 28 C -0.14 -1.98 9.67 71.98 0.70 -1.28 16 29 C 0.14 5.22 5.26 86.36 0.45 5.67 16 30 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.09 2.66 7.84 -2.91 -0.02 2.63 16 32 H 0.11 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.07 2.67 7.21 -2.39 -0.02 2.65 16 34 H 0.08 3.08 8.06 -2.39 -0.02 3.06 16 35 H 0.02 0.83 7.90 -2.39 -0.02 0.82 16 36 H 0.04 1.88 4.54 -2.39 -0.01 1.87 16 37 H 0.26 14.32 7.22 -92.71 -0.67 13.65 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 2.14 5.68 -2.39 -0.01 2.12 16 40 H 0.11 1.83 8.14 -2.39 -0.02 1.82 16 41 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.12 1.57 5.25 -2.39 -0.01 1.55 16 44 H 0.04 1.04 8.01 -2.39 -0.02 1.02 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.10 1.25 6.78 -2.39 -0.02 1.23 16 47 H 0.06 1.40 7.98 -2.39 -0.02 1.38 16 48 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 50 H 0.07 0.81 6.66 -2.39 -0.02 0.80 16 51 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.06 2.41 7.03 -2.38 -0.02 2.39 16 53 H 0.08 2.74 7.73 -2.39 -0.02 2.73 16 Total: -1.00 -70.53 412.06 5.42 -65.11 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.97 Total: 27.74 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 6.67 Total: 5.70 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -4.18 Total: -98.22 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.09 Total: -51.49 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.05 Total: 51.17 kcal Total: -70.53 5.42 -65.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292291519.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.299 kcal (2) G-P(sol) polarization free energy of solvation -70.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds