Wall clock time and date at job start Tue Mar 31 2020 20:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00443 * 2 1 4 4 N 1.46501 * 109.47214 * 124.99898 * 3 2 1 5 5 C 1.46503 * 119.99530 * 94.93039 * 4 3 2 6 6 C 1.50694 * 109.47457 * 84.60897 * 5 4 3 7 7 H 1.07997 * 120.00197 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99842 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00138 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99745 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47233 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47325 * 240.00232 * 10 8 6 13 13 H 1.48506 * 109.47279 * 120.00425 * 10 8 6 14 14 C 1.34770 * 120.00327 * 274.92892 * 4 3 2 15 15 O 1.21282 * 120.00186 * 5.54299 * 14 4 3 16 16 C 1.50699 * 120.00045 * 185.54719 * 14 4 3 17 17 H 1.09007 * 109.49727 * 42.87023 * 16 14 4 18 18 C 1.53040 * 109.49948 * 282.80175 * 16 14 4 19 19 C 1.53035 * 109.54087 * 178.71785 * 18 16 14 20 20 C 1.53189 * 109.33887 * 61.31389 * 19 18 16 21 21 N 1.46929 * 108.77768 * 305.38086 * 20 19 18 22 22 C 1.34773 * 120.62967 * 233.63123 * 21 20 19 23 23 O 1.21285 * 120.00389 * 4.89010 * 22 21 20 24 24 C 1.50703 * 119.99969 * 184.88818 * 22 21 20 25 25 H 1.08997 * 109.46798 * 307.09323 * 24 22 21 26 26 C 1.53000 * 109.46937 * 67.09148 * 24 22 21 27 27 C 1.52997 * 109.47067 * 187.09464 * 24 22 21 28 28 C 1.53004 * 109.46987 * 175.00164 * 27 24 22 29 29 C 1.46921 * 118.73725 * 53.60923 * 21 20 19 30 30 H 1.07998 * 119.99831 * 359.97438 * 1 2 3 31 31 H 1.07992 * 120.00320 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99831 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.46740 * 5.00140 * 3 2 1 34 34 H 1.08997 * 109.47422 * 245.00413 * 3 2 1 35 35 H 1.09000 * 109.47041 * 324.60727 * 5 4 3 36 36 H 1.09005 * 109.46537 * 204.61389 * 5 4 3 37 37 H 0.96992 * 120.00258 * 359.97438 * 9 8 6 38 38 H 1.08999 * 109.45982 * 298.70504 * 18 16 14 39 39 H 1.08995 * 109.45727 * 58.65784 * 18 16 14 40 40 H 1.09005 * 109.46969 * 301.36374 * 19 18 16 41 41 H 1.08995 * 109.52365 * 181.30167 * 19 18 16 42 42 H 1.09005 * 109.58474 * 185.59106 * 20 19 18 43 43 H 1.09000 * 109.70440 * 65.24125 * 20 19 18 44 44 H 1.09002 * 109.47085 * 65.16089 * 26 24 22 45 45 H 1.09002 * 109.47007 * 185.16339 * 26 24 22 46 46 H 1.08997 * 109.47383 * 305.16313 * 26 24 22 47 47 H 1.09001 * 109.47113 * 294.99859 * 27 24 22 48 48 H 1.08999 * 109.47368 * 54.99701 * 27 24 22 49 49 H 1.08998 * 109.47185 * 180.02562 * 28 27 24 50 50 H 1.09001 * 109.46946 * 299.99798 * 28 27 24 51 51 H 1.08999 * 109.47445 * 59.99584 * 28 27 24 52 52 H 1.09004 * 109.58809 * 186.60237 * 29 21 20 53 53 H 1.08997 * 109.70348 * 66.25121 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3890 0.9268 0.9423 6 6 5.1878 2.0989 0.4333 7 1 4.7047 3.0505 0.2677 8 6 6.5356 1.9567 0.1801 9 7 7.1240 0.7980 0.3822 10 14 7.5259 3.4098 -0.4501 11 1 6.6366 4.5905 -0.5923 12 1 8.1155 3.0718 -1.7706 13 1 8.6131 3.7225 0.5119 14 6 2.5662 1.7290 2.3462 15 8 1.3910 1.9678 2.5273 16 6 3.5484 1.8765 3.4797 17 1 4.4525 2.3652 3.1164 18 6 3.9019 0.4939 4.0324 19 6 4.9235 0.6403 5.1624 20 6 4.3124 1.4724 6.2941 21 7 3.8383 2.7481 5.7403 22 6 4.2370 3.9192 6.2750 23 8 5.0621 3.9305 7.1638 24 6 3.6576 5.2149 5.7683 25 1 3.7680 5.2631 4.6850 26 6 2.1736 5.2872 6.1334 27 6 4.3985 6.3900 6.4093 28 6 3.8959 7.7017 5.8028 29 6 2.9217 2.7226 4.5924 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9352 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 4.4362 0.1132 0.2184 36 1 4.8020 0.5912 1.8936 37 1 6.6099 0.0436 0.7098 38 1 3.0013 0.0156 4.4175 39 1 4.3256 -0.1180 3.2361 40 1 5.8150 1.1403 4.7837 41 1 5.1925 -0.3460 5.5403 42 1 5.0679 1.6632 7.0564 43 1 3.4753 0.9324 6.7366 44 1 2.0678 5.3313 7.2174 45 1 1.7331 6.1796 5.6887 46 1 1.6625 4.4023 5.7542 47 1 4.2149 6.3927 7.4837 48 1 5.4679 6.2901 6.2237 49 1 4.4240 8.5389 6.2591 50 1 4.0794 7.6990 4.7283 51 1 2.8264 7.8016 5.9883 52 1 2.7595 3.7384 4.2317 53 1 1.9695 2.2850 4.8920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292291522.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:16 Heat of formation + Delta-G solvation = -85.994824 kcal Electronic energy + Delta-G solvation = -31384.864063 eV Core-core repulsion = 27448.628840 eV Total energy + Delta-G solvation = -3936.235222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.86297 -40.81633 -38.36983 -37.22108 -36.50082 -35.46733 -34.33056 -33.64965 -32.40169 -30.48498 -28.91423 -27.51866 -27.05811 -25.72365 -25.19185 -24.44999 -23.06160 -21.43662 -20.99487 -20.17175 -19.92940 -18.96192 -18.28763 -17.98284 -17.31812 -16.90803 -16.46890 -16.37076 -15.91541 -15.69941 -15.49407 -15.32626 -15.23953 -14.96256 -14.77584 -14.35843 -14.22366 -14.02327 -13.92790 -13.65788 -13.64158 -13.47443 -13.31419 -12.97441 -12.71062 -12.62231 -12.57505 -12.52981 -12.29147 -12.27207 -12.14391 -11.98494 -11.91234 -11.75332 -11.71696 -11.60857 -11.18198 -10.85202 -10.71248 -10.57233 -10.29011 -9.73109 -9.50168 -8.63456 -6.41634 1.24919 1.49845 1.52717 1.58342 1.64496 1.74435 1.88836 2.39031 2.53207 3.12897 3.32199 3.60783 3.65933 3.72264 3.79730 3.90597 3.95958 3.99753 4.07218 4.18595 4.19563 4.31317 4.41959 4.46128 4.48665 4.53493 4.58222 4.64597 4.68221 4.68898 4.73078 4.75437 4.78222 4.84394 4.93570 4.94645 4.98448 4.99835 5.07733 5.12797 5.17689 5.26037 5.33014 5.40601 5.49177 5.60091 5.64077 5.80859 5.82874 6.11307 6.28235 6.48434 6.63026 7.06330 7.20649 7.36789 8.71900 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008146 B = 0.004548 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.342604 B = 6155.559436 C = 7463.869594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.184 4.184 3 C 0.145 3.855 4 N -0.590 5.590 5 C 0.231 3.769 6 C -0.617 4.617 7 H 0.045 0.955 8 C -0.016 4.016 9 N -0.928 5.928 10 Si 1.107 2.893 11 H -0.275 1.275 12 H -0.279 1.279 13 H -0.283 1.283 14 C 0.524 3.476 15 O -0.577 6.577 16 C -0.117 4.117 17 H 0.083 0.917 18 C -0.105 4.105 19 C -0.123 4.123 20 C 0.110 3.890 21 N -0.608 5.608 22 C 0.516 3.484 23 O -0.579 6.579 24 C -0.113 4.113 25 H 0.097 0.903 26 C -0.141 4.141 27 C -0.101 4.101 28 C -0.149 4.149 29 C 0.138 3.862 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.010 0.990 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.048 0.952 49 H 0.064 0.936 50 H 0.054 0.946 51 H 0.071 0.929 52 H 0.094 0.906 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 4.111 8.170 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.203 4.203 3 C 0.023 3.977 4 N -0.319 5.319 5 C 0.109 3.891 6 C -0.656 4.656 7 H 0.063 0.937 8 C -0.216 4.216 9 N -0.565 5.565 10 Si 0.930 3.070 11 H -0.200 1.200 12 H -0.204 1.204 13 H -0.209 1.209 14 C 0.313 3.687 15 O -0.458 6.458 16 C -0.139 4.139 17 H 0.102 0.898 18 C -0.142 4.142 19 C -0.161 4.161 20 C -0.012 4.012 21 N -0.340 5.340 22 C 0.306 3.694 23 O -0.460 6.460 24 C -0.135 4.135 25 H 0.115 0.885 26 C -0.199 4.199 27 C -0.139 4.139 28 C -0.206 4.206 29 C 0.015 3.985 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.028 0.972 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.083 0.917 50 H 0.073 0.927 51 H 0.090 0.910 52 H 0.112 0.888 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.367 4.699 8.245 13.334 hybrid contribution -0.911 -0.910 -0.065 1.289 sum -10.278 3.789 8.180 13.671 Atomic orbital electron populations 1.23946 0.95079 1.02717 0.97957 1.23188 0.96807 0.97999 1.02273 1.20467 0.91856 0.96086 0.89312 1.48011 1.11422 1.63903 1.08524 1.19441 0.77522 0.94936 0.97169 1.22533 0.96392 0.98032 1.48628 0.93674 1.26874 0.96898 1.03102 0.94765 1.70873 1.39860 1.02120 1.43647 0.83033 0.74783 0.72450 0.76729 1.20008 1.20427 1.20923 1.20502 0.88479 0.75866 0.83891 1.90582 1.18392 1.53284 1.83586 1.21567 0.98656 0.99710 0.93972 0.89831 1.21522 1.00142 0.94103 0.98472 1.21822 0.97559 1.01487 0.95236 1.21709 1.00206 0.83277 0.96034 1.48175 1.47397 1.06347 1.32093 1.21230 0.80496 0.86113 0.81550 1.90632 1.34477 1.87686 1.33157 1.21442 0.98519 0.91438 1.02053 0.88535 1.21879 0.91546 1.03921 1.02512 1.21303 0.98885 0.93489 1.00184 1.21812 1.02178 0.95757 1.00830 1.21529 0.91898 1.01175 0.83882 0.88256 0.86504 0.87850 0.90840 0.90336 0.97219 0.93918 0.92863 0.90146 0.91788 0.93464 0.88026 0.89811 0.89178 0.91834 0.89260 0.91858 0.91706 0.93341 0.91683 0.92684 0.91001 0.88793 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 14.32 67.78 0.97 -3.13 16 2 C -0.18 -5.63 9.81 25.65 0.25 -5.38 16 3 C 0.15 5.16 5.78 85.63 0.49 5.65 16 4 N -0.59 -23.36 2.45 -830.50 -2.04 -25.40 16 5 C 0.23 10.38 4.02 85.63 0.34 10.72 16 6 C -0.62 -31.26 9.07 25.60 0.23 -31.03 16 7 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 8 C -0.02 -0.83 5.46 84.65 0.46 -0.37 16 9 N -0.93 -51.70 13.65 21.45 0.29 -51.40 16 10 Si 1.11 47.59 29.90 68.60 2.05 49.64 16 11 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 14 C 0.52 19.72 6.83 87.66 0.60 20.32 16 15 O -0.58 -22.53 15.62 -3.04 -0.05 -22.58 16 16 C -0.12 -3.93 1.83 -11.46 -0.02 -3.95 16 17 H 0.08 3.33 7.26 -2.38 -0.02 3.32 16 18 C -0.10 -3.12 4.84 30.62 0.15 -2.97 16 19 C -0.12 -3.32 6.08 30.67 0.19 -3.14 16 20 C 0.11 2.83 6.44 86.36 0.56 3.39 16 21 N -0.61 -17.21 2.97 -818.90 -2.43 -19.64 16 22 C 0.52 15.67 6.98 87.66 0.61 16.28 16 23 O -0.58 -21.17 15.42 -3.04 -0.05 -21.22 16 24 C -0.11 -2.74 1.87 -11.54 -0.02 -2.76 16 25 H 0.10 2.36 7.09 -2.39 -0.02 2.34 16 26 C -0.14 -2.69 8.45 71.98 0.61 -2.08 16 27 C -0.10 -2.32 4.70 30.59 0.14 -2.18 16 28 C -0.15 -2.60 9.67 71.98 0.70 -1.90 16 29 C 0.14 3.90 3.75 86.36 0.32 4.23 16 30 H 0.10 2.50 7.84 -2.91 -0.02 2.47 16 31 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.10 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.07 2.57 7.31 -2.38 -0.02 2.55 16 34 H 0.08 2.87 8.03 -2.39 -0.02 2.85 16 35 H 0.01 0.47 7.98 -2.39 -0.02 0.45 16 36 H 0.04 1.94 4.10 -2.38 -0.01 1.93 16 37 H 0.26 14.43 7.22 -92.71 -0.67 13.76 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 2.14 5.75 -2.39 -0.01 2.12 16 40 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.08 2.33 7.00 -2.38 -0.02 2.32 16 43 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.09 1.36 6.82 -2.39 -0.02 1.34 16 46 H 0.06 1.24 6.05 -2.39 -0.01 1.23 16 47 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.05 1.30 8.06 -2.39 -0.02 1.28 16 49 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.07 1.04 6.68 -2.39 -0.02 1.03 16 52 H 0.09 2.56 5.09 -2.38 -0.01 2.55 16 53 H 0.09 2.41 7.72 -2.39 -0.02 2.39 16 Total: -1.00 -62.80 410.31 5.34 -57.46 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.98 Total: 31.44 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 6.59 Total: 1.70 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -4.18 Total: -96.45 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.09 Total: -43.80 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.05 Total: 49.64 kcal Total: -62.80 5.34 -57.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292291522.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.537 kcal (2) G-P(sol) polarization free energy of solvation -62.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds