Wall clock time and date at job start Tue Mar 31 2020 20:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 H 1.09002 * 109.46772 * 54.99662 * 3 2 1 5 5 C 1.52999 * 109.47395 * 174.99784 * 3 2 1 6 6 O 1.42895 * 109.47102 * 295.00259 * 3 2 1 7 7 C 1.35900 * 117.00532 * 150.55671 * 6 3 2 8 8 C 1.38820 * 120.01497 * 5.57365 * 7 6 3 9 9 C 1.38166 * 120.09220 * 180.02562 * 8 7 6 10 10 C 1.38159 * 120.13192 * 0.02562 * 9 8 7 11 11 C 1.38932 * 120.02986 * 0.02562 * 10 9 8 12 12 N 1.39664 * 120.04172 * 179.97438 * 11 10 9 13 13 C 1.46500 * 120.00302 * 0.02562 * 12 11 10 14 14 C 1.53004 * 109.47199 * 180.02562 * 13 12 11 15 15 H 1.09005 * 109.47069 * 304.99811 * 14 13 12 16 16 O 1.42896 * 109.47137 * 65.00301 * 14 13 12 17 17 C 1.53002 * 109.46816 * 185.00094 * 14 13 12 18 18 N 1.46906 * 109.46950 * 176.66431 * 17 14 13 19 19 C 1.46898 * 111.00068 * 163.25220 * 18 17 14 20 20 C 1.46899 * 111.00017 * 287.21096 * 18 17 14 21 21 C 1.50703 * 109.46694 * 169.99522 * 20 18 17 22 22 H 1.07995 * 120.00479 * 0.02562 * 21 20 18 23 23 C 1.37884 * 119.99714 * 179.97438 * 21 20 18 24 24 N 1.31509 * 120.00030 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99827 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46718 * 60.00690 * 25 23 21 27 27 H 1.48500 * 109.47081 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47125 * 300.00336 * 25 23 21 29 29 C 1.38570 * 120.02417 * 185.60590 * 7 6 3 30 30 H 1.08999 * 109.47658 * 299.99879 * 1 2 3 31 31 H 1.09003 * 109.47439 * 60.00151 * 1 2 3 32 32 H 1.09010 * 109.46737 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47159 * 240.00052 * 2 1 3 34 34 H 1.09000 * 109.46933 * 119.99903 * 2 1 3 35 35 H 1.08998 * 109.46776 * 60.00086 * 5 3 2 36 36 H 1.08998 * 109.47394 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.46724 * 300.00085 * 5 3 2 38 38 H 1.08003 * 119.95292 * 359.75258 * 8 7 6 39 39 H 1.08003 * 119.93208 * 180.02562 * 9 8 7 40 40 H 1.08000 * 119.98304 * 180.02562 * 10 9 8 41 41 H 0.97003 * 119.99919 * 180.02562 * 12 11 10 42 42 H 1.08999 * 109.47033 * 299.99920 * 13 12 11 43 43 H 1.08997 * 109.46772 * 60.00225 * 13 12 11 44 44 H 0.96693 * 114.00106 * 59.99895 * 16 14 13 45 45 H 1.08998 * 109.47292 * 296.66319 * 17 14 13 46 46 H 1.08997 * 109.47395 * 56.66720 * 17 14 13 47 47 H 1.09003 * 109.46727 * 65.87132 * 19 18 17 48 48 H 1.09000 * 109.47490 * 185.87062 * 19 18 17 49 49 H 1.08995 * 109.47286 * 305.87623 * 19 18 17 50 50 H 1.08997 * 109.47461 * 289.99580 * 20 18 17 51 51 H 1.08995 * 109.47134 * 50.00075 * 20 18 17 52 52 H 0.97004 * 120.00422 * 179.97438 * 24 23 21 53 53 H 1.08003 * 120.05748 * 359.94680 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 8 1.6619 2.0813 -1.2210 7 6 1.4614 3.4248 -1.1782 8 6 1.7369 4.1313 -0.0154 9 6 1.5333 5.4971 0.0301 10 6 1.0544 6.1643 -1.0809 11 6 0.7759 5.4623 -2.2470 12 7 0.2913 6.1364 -3.3701 13 6 0.0768 7.5847 -3.3192 14 6 -0.4545 8.0694 -4.6697 15 1 0.2275 7.7586 -5.4612 16 8 -1.7458 7.5041 -4.9042 17 6 -0.5605 9.5957 -4.6580 18 7 -0.9943 10.0666 -5.9802 19 6 -1.4865 11.4489 -5.9113 20 6 0.0886 9.9417 -6.9649 21 6 -0.4569 10.1973 -8.3464 22 1 -1.5031 10.4297 -8.4794 23 6 0.3802 10.1354 -9.4403 24 7 1.6543 9.8529 -9.2783 25 14 -0.2957 10.4530 -11.1526 26 1 -0.8652 11.8231 -11.2136 27 1 0.7989 10.3266 -12.1481 28 1 -1.3581 9.4612 -11.4571 29 6 0.9814 4.0902 -2.2948 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9994 0.9054 -0.7160 36 1 3.9280 2.4721 0.1262 37 1 3.8531 0.9571 1.0572 38 1 2.1068 3.6119 0.8564 39 1 1.7488 6.0442 0.9360 40 1 0.8964 7.2320 -1.0428 41 1 0.0967 5.6456 -4.1839 42 1 -0.6482 7.8175 -2.5393 43 1 1.0203 8.0842 -3.0991 44 1 -2.4051 7.7392 -4.2372 45 1 -1.2871 9.9037 -3.9062 46 1 0.4126 10.0257 -4.4205 47 1 -0.6633 12.1152 -5.6530 48 1 -1.8972 11.7371 -6.8790 49 1 -2.2640 11.5203 -5.1508 50 1 0.8684 10.6697 -6.7418 51 1 0.5065 8.9361 -6.9197 52 1 2.2431 9.8090 -10.0479 53 1 0.7668 3.5421 -3.2004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566126200.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:53 Heat of formation + Delta-G solvation = -89.401012 kcal Electronic energy + Delta-G solvation = -28638.220499 eV Core-core repulsion = 24701.837573 eV Total energy + Delta-G solvation = -3936.382926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.24411 -39.86458 -38.91999 -37.25095 -35.77864 -34.87149 -34.61940 -32.06185 -31.13627 -30.52128 -29.67323 -29.14855 -27.07103 -25.47582 -24.85735 -23.88486 -23.45395 -22.52382 -21.78523 -21.14750 -19.25851 -18.62467 -17.92742 -17.17138 -17.12650 -16.88297 -16.56204 -16.53446 -16.16648 -15.98187 -15.46903 -15.29378 -15.17115 -14.90837 -14.56795 -14.45973 -14.34674 -14.14590 -13.99642 -13.97440 -13.81038 -13.19499 -13.09714 -12.94985 -12.82211 -12.63219 -12.61321 -12.54730 -12.49140 -12.31990 -12.17193 -12.06488 -11.97550 -11.63195 -11.54272 -11.39108 -11.35104 -10.89559 -10.82857 -10.61027 -9.22970 -8.96434 -8.36006 -8.21467 -6.30788 0.57437 0.70492 1.39091 1.42769 1.50373 2.10561 2.39281 2.60377 2.96386 3.10845 3.25307 3.60418 3.74645 3.85972 3.95653 4.03228 4.05095 4.06967 4.24989 4.26819 4.36369 4.38116 4.42850 4.47048 4.57745 4.58312 4.63301 4.66930 4.68508 4.70686 4.78315 4.81000 4.94510 5.03307 5.06171 5.07059 5.10093 5.18461 5.20897 5.25092 5.30230 5.35139 5.37830 5.48752 5.63227 5.63957 5.73897 6.05495 6.32839 6.37781 6.59197 6.64060 6.73463 6.84990 6.99715 7.38521 8.89230 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.001869 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.904792 B =14979.668547 C =15662.843842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.072 3.928 4 H 0.084 0.916 5 C -0.175 4.175 6 O -0.327 6.327 7 C 0.168 3.832 8 C -0.274 4.274 9 C -0.033 4.033 10 C -0.246 4.246 11 C 0.247 3.753 12 N -0.739 5.739 13 C 0.108 3.892 14 C 0.114 3.886 15 H 0.068 0.932 16 O -0.558 6.558 17 C 0.028 3.972 18 N -0.543 5.543 19 C 0.041 3.959 20 C 0.208 3.792 21 C -0.524 4.524 22 H 0.061 0.939 23 C -0.001 4.001 24 N -0.934 5.934 25 Si 0.968 3.032 26 H -0.266 1.266 27 H -0.283 1.283 28 H -0.271 1.271 29 C -0.259 4.259 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.132 0.868 41 H 0.401 0.599 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.383 0.617 45 H 0.104 0.896 46 H 0.032 0.968 47 H 0.009 0.991 48 H 0.053 0.947 49 H 0.085 0.915 50 H -0.040 1.040 51 H 0.005 0.995 52 H 0.264 0.736 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 -14.216 25.915 29.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.016 3.984 4 H 0.102 0.898 5 C -0.232 4.232 6 O -0.241 6.241 7 C 0.122 3.878 8 C -0.294 4.294 9 C -0.051 4.051 10 C -0.269 4.269 11 C 0.142 3.858 12 N -0.367 5.367 13 C -0.017 4.017 14 C 0.054 3.946 15 H 0.086 0.914 16 O -0.364 6.364 17 C -0.101 4.101 18 N -0.266 5.266 19 C -0.107 4.107 20 C 0.082 3.918 21 C -0.562 4.562 22 H 0.079 0.921 23 C -0.199 4.199 24 N -0.575 5.575 25 Si 0.793 3.207 26 H -0.190 1.190 27 H -0.209 1.209 28 H -0.196 1.196 29 C -0.282 4.282 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.150 0.850 41 H 0.235 0.765 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.232 0.768 45 H 0.122 0.878 46 H 0.051 0.949 47 H 0.028 0.972 48 H 0.072 0.928 49 H 0.103 0.897 50 H -0.023 1.023 51 H 0.023 0.977 52 H 0.072 0.928 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.729 -14.694 25.004 29.011 hybrid contribution 0.575 0.808 -0.901 1.340 sum -0.154 -13.886 24.103 27.817 Atomic orbital electron populations 1.21758 0.95554 1.02280 1.01559 1.21697 0.96470 0.93400 1.03973 1.22793 0.95832 0.94299 0.85433 0.89802 1.22325 0.94305 1.02868 1.03726 1.86084 1.83259 1.18000 1.36758 1.18718 0.92618 0.82724 0.93778 1.21190 1.13999 0.95805 0.98436 1.20980 0.92912 0.93391 0.97831 1.20781 1.12278 1.00618 0.93194 1.17628 0.90393 0.90210 0.87611 1.44686 1.71573 1.07262 1.13153 1.21966 1.01438 0.80771 0.97517 1.21862 0.85312 0.92004 0.95461 0.91444 1.86642 1.20429 1.74560 1.54761 1.22735 1.00049 0.95233 0.92095 1.61922 1.36597 1.21988 1.06139 1.22217 0.98652 0.87790 1.02008 1.19394 0.87741 0.93903 0.90751 1.21460 0.95597 1.46993 0.92130 0.92079 1.25923 0.95078 0.95134 1.03739 1.70071 1.05213 1.50251 1.31970 0.85454 0.77840 0.79116 0.78330 1.19042 1.20852 1.19568 1.19770 1.15747 0.93055 0.99649 0.92301 0.94189 0.91386 0.91494 0.87658 0.92244 0.92543 0.88708 0.83990 0.83292 0.84972 0.76473 0.89458 0.91186 0.76822 0.87810 0.94940 0.97247 0.92813 0.89685 1.02250 0.97736 0.92759 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.81 71.98 0.71 -1.34 16 2 C -0.12 -1.41 5.64 30.59 0.17 -1.24 16 3 C 0.07 1.08 2.20 30.59 0.07 1.14 16 4 H 0.08 1.10 6.02 -2.39 -0.01 1.09 16 5 C -0.17 -2.20 9.30 71.98 0.67 -1.53 16 6 O -0.33 -7.46 9.32 -92.43 -0.86 -8.33 16 7 C 0.17 4.07 6.64 22.49 0.15 4.21 16 8 C -0.27 -5.42 8.48 22.39 0.19 -5.23 16 9 C -0.03 -0.61 10.03 22.23 0.22 -0.39 16 10 C -0.25 -5.39 9.31 22.42 0.21 -5.19 16 11 C 0.25 6.33 6.65 38.20 0.25 6.58 16 12 N -0.74 -19.04 5.68 -339.48 -1.93 -20.97 16 13 C 0.11 2.53 4.55 86.38 0.39 2.92 16 14 C 0.11 3.49 3.05 30.60 0.09 3.58 16 15 H 0.07 2.66 6.54 -2.38 -0.02 2.65 16 16 O -0.56 -17.30 13.21 -148.98 -1.97 -19.27 16 17 C 0.03 0.88 4.63 86.30 0.40 1.28 16 18 N -0.54 -22.76 4.63 -927.05 -4.29 -27.05 16 19 C 0.04 1.53 9.32 127.69 1.19 2.72 16 20 C 0.21 11.16 4.57 85.56 0.39 11.55 16 21 C -0.52 -30.27 8.54 25.60 0.22 -30.05 16 22 H 0.06 3.47 7.10 -2.91 -0.02 3.45 16 23 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 24 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 25 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 28 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 29 C -0.26 -6.95 9.83 22.49 0.22 -6.73 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.71 7.82 -2.39 -0.02 0.69 16 32 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.81 7.42 -2.39 -0.02 0.79 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.14 2.13 5.60 -2.91 -0.02 2.11 16 39 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.13 2.50 6.73 -2.91 -0.02 2.48 16 41 H 0.40 11.09 8.48 -92.71 -0.79 10.30 16 42 H 0.09 1.61 7.95 -2.39 -0.02 1.59 16 43 H 0.07 1.62 7.95 -2.39 -0.02 1.60 16 44 H 0.38 8.39 9.04 -74.06 -0.67 7.72 16 45 H 0.10 2.47 7.85 -2.39 -0.02 2.45 16 46 H 0.03 1.05 8.04 -2.39 -0.02 1.03 16 47 H 0.01 0.33 8.13 -2.39 -0.02 0.32 16 48 H 0.05 2.18 6.91 -2.39 -0.02 2.16 16 49 H 0.08 2.42 7.95 -2.39 -0.02 2.40 16 50 H -0.04 -2.33 8.11 -2.39 -0.02 -2.35 16 51 H 0.00 0.27 6.40 -2.39 -0.02 0.25 16 52 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 53 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -71.56 422.30 -1.28 -72.85 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.56 Total: 29.73 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 6.01 Total: -17.30 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.93 Total: -104.96 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -2.83 Total: -27.60 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -71.56 -1.28 -72.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566126200.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.555 kcal (2) G-P(sol) polarization free energy of solvation -71.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds