Wall clock time and date at job start Tue Mar 31 2020 20:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46794 * 2 1 4 4 H 1.08998 * 109.46872 * 304.99997 * 3 2 1 5 5 C 1.52995 * 109.47067 * 185.00399 * 3 2 1 6 6 O 1.42894 * 109.47280 * 64.99966 * 3 2 1 7 7 C 1.35896 * 117.00335 * 204.63475 * 6 3 2 8 8 C 1.38810 * 120.01530 * 354.95613 * 7 6 3 9 9 C 1.38178 * 120.09191 * 179.72202 * 8 7 6 10 10 C 1.38150 * 120.12788 * 0.26180 * 9 8 7 11 11 C 1.38926 * 120.03717 * 359.97438 * 10 9 8 12 12 N 1.39668 * 120.04910 * 180.02562 * 11 10 9 13 13 C 1.46503 * 120.00012 * 0.02562 * 12 11 10 14 14 C 1.53001 * 109.47324 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.47129 * 305.00033 * 14 13 12 16 16 O 1.42906 * 109.46709 * 64.99907 * 14 13 12 17 17 C 1.52999 * 109.47212 * 184.99837 * 14 13 12 18 18 N 1.46893 * 109.47083 * 178.43393 * 17 14 13 19 19 C 1.46905 * 110.99758 * 163.97607 * 18 17 14 20 20 C 1.46904 * 111.00280 * 287.92657 * 18 17 14 21 21 C 1.50697 * 109.47399 * 170.00036 * 20 18 17 22 22 H 1.08004 * 119.99800 * 0.02562 * 21 20 18 23 23 C 1.37867 * 119.99974 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00165 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00250 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47350 * 90.00106 * 25 23 21 27 27 H 1.48499 * 109.47237 * 210.00180 * 25 23 21 28 28 H 1.48502 * 109.46841 * 329.99982 * 25 23 21 29 29 C 1.38576 * 120.02063 * 175.21529 * 7 6 3 30 30 H 1.09009 * 109.47008 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47520 * 299.99645 * 1 2 3 32 32 H 1.09003 * 109.47597 * 60.00274 * 1 2 3 33 33 H 1.08998 * 109.47520 * 240.00355 * 2 1 3 34 34 H 1.08998 * 109.47150 * 119.99816 * 2 1 3 35 35 H 1.09007 * 109.46686 * 299.99702 * 5 3 2 36 36 H 1.08994 * 109.47937 * 59.99519 * 5 3 2 37 37 H 1.09002 * 109.47320 * 180.02562 * 5 3 2 38 38 H 1.08004 * 119.95618 * 0.02562 * 8 7 6 39 39 H 1.07999 * 119.93052 * 180.27175 * 9 8 7 40 40 H 1.08000 * 119.98144 * 180.02562 * 10 9 8 41 41 H 0.96998 * 120.00330 * 180.02562 * 12 11 10 42 42 H 1.09005 * 109.46763 * 300.00280 * 13 12 11 43 43 H 1.08998 * 109.47376 * 59.99714 * 13 12 11 44 44 H 0.96701 * 113.99713 * 60.00413 * 16 14 13 45 45 H 1.09004 * 109.47010 * 298.43341 * 17 14 13 46 46 H 1.09002 * 109.46667 * 58.43241 * 17 14 13 47 47 H 1.08999 * 109.47184 * 65.35988 * 19 18 17 48 48 H 1.09007 * 109.46791 * 185.36079 * 19 18 17 49 49 H 1.09000 * 109.46992 * 305.35659 * 19 18 17 50 50 H 1.09000 * 109.47026 * 290.00677 * 20 18 17 51 51 H 1.08999 * 109.46783 * 50.00077 * 20 18 17 52 52 H 0.97000 * 120.00360 * 179.97438 * 24 23 21 53 53 H 1.07999 * 120.06366 * 359.96894 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5647 1.4445 -0.1258 6 8 1.6619 2.0815 1.2210 7 6 1.5594 3.4364 1.2024 8 6 1.9183 4.1444 0.0636 9 6 1.8093 5.5217 0.0410 10 6 1.3480 6.1991 1.1531 11 6 0.9919 5.4963 2.2974 12 7 0.5250 6.1809 3.4217 13 6 0.4099 7.6412 3.3947 14 6 -0.1221 8.1358 4.7412 15 1 -1.0604 7.6301 4.9691 16 8 0.8336 7.8507 5.7647 17 6 -0.3602 9.6456 4.6720 18 7 -0.9063 10.1143 5.9526 19 6 -0.7952 11.5745 6.0693 20 6 -2.2984 9.6771 6.1229 21 6 -2.7443 9.9588 7.5346 22 1 -2.0619 10.4173 8.2351 23 6 -4.0232 9.6313 7.9318 24 7 -4.4123 9.8767 9.1640 25 14 -5.2032 8.8378 6.7205 26 1 -5.0691 7.3607 6.7940 27 1 -6.5959 9.2258 7.0596 28 1 -4.8827 9.2961 5.3448 29 6 1.1016 4.1125 2.3221 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9993 0.9055 0.7161 36 1 3.8531 0.9572 -1.0571 37 1 3.9280 2.4722 -0.1254 38 1 2.2786 3.6176 -0.8077 39 1 2.0851 6.0695 -0.8479 40 1 1.2633 7.2756 1.1327 41 1 0.2770 5.6896 4.2204 42 1 1.3903 8.0795 3.2077 43 1 -0.2773 7.9369 2.6021 44 1 1.6943 8.2694 5.6268 45 1 0.5832 10.1534 4.4717 46 1 -1.0681 9.8654 3.8728 47 1 -1.4262 12.0482 5.3173 48 1 -1.1184 11.8852 7.0629 49 1 0.2415 11.8735 5.9144 50 1 -2.9373 10.2185 5.4252 51 1 -2.3699 8.6074 5.9259 52 1 -5.3122 9.6467 9.4434 53 1 0.8254 3.5636 3.2102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566126202.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:57 Heat of formation + Delta-G solvation = -86.497621 kcal Electronic energy + Delta-G solvation = -28737.558374 eV Core-core repulsion = 24801.301348 eV Total energy + Delta-G solvation = -3936.257025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.25033 -39.88057 -38.94403 -37.28484 -35.77127 -34.87995 -34.60749 -32.08545 -31.15731 -30.56757 -30.09195 -29.32144 -27.04979 -25.26633 -24.82339 -23.84307 -23.39911 -22.50866 -21.68798 -21.15933 -19.25771 -19.05316 -17.91723 -17.22575 -17.13880 -16.90579 -16.54168 -16.36643 -16.19747 -16.06960 -15.47670 -15.45439 -14.97718 -14.93478 -14.57596 -14.48783 -14.43887 -14.27312 -14.19969 -14.03689 -13.85632 -13.26097 -13.17474 -13.02809 -12.81690 -12.65731 -12.62998 -12.48349 -12.40666 -12.24850 -12.05078 -11.99134 -11.88594 -11.69060 -11.63617 -11.46352 -11.42315 -10.89273 -10.82554 -10.79056 -9.22879 -8.96991 -8.35261 -8.29628 -6.32346 0.57538 0.70757 1.31604 1.32722 1.42685 2.10577 2.31670 2.59851 2.96759 3.03169 3.19256 3.62414 3.74181 3.82624 3.94683 4.02836 4.04700 4.07334 4.23229 4.26441 4.35629 4.37765 4.41981 4.46576 4.54111 4.58492 4.62423 4.66383 4.67638 4.69388 4.72255 4.80882 4.89830 4.94000 4.99341 5.03624 5.06076 5.12220 5.17579 5.20844 5.25337 5.34891 5.37199 5.48750 5.54034 5.63880 5.73838 5.96847 6.35303 6.39407 6.59229 6.64943 6.73952 6.74428 6.99458 7.30714 8.87184 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.002056 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.886190 B =13616.887745 C =14780.786294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C 0.074 3.926 4 H 0.080 0.920 5 C -0.177 4.177 6 O -0.327 6.327 7 C 0.167 3.833 8 C -0.274 4.274 9 C -0.034 4.034 10 C -0.245 4.245 11 C 0.248 3.752 12 N -0.739 5.739 13 C 0.107 3.893 14 C 0.109 3.891 15 H 0.075 0.925 16 O -0.560 6.560 17 C 0.026 3.974 18 N -0.542 5.542 19 C 0.042 3.958 20 C 0.173 3.827 21 C -0.514 4.514 22 H 0.036 0.964 23 C 0.005 3.995 24 N -0.948 5.948 25 Si 0.945 3.055 26 H -0.268 1.268 27 H -0.280 1.280 28 H -0.249 1.249 29 C -0.258 4.258 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.401 0.599 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.383 0.617 45 H 0.103 0.897 46 H 0.044 0.956 47 H 0.019 0.981 48 H 0.043 0.957 49 H 0.084 0.916 50 H -0.013 1.013 51 H 0.025 0.975 52 H 0.266 0.734 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.483 -14.657 -27.001 34.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C 0.018 3.982 4 H 0.098 0.902 5 C -0.234 4.234 6 O -0.241 6.241 7 C 0.120 3.880 8 C -0.294 4.294 9 C -0.052 4.052 10 C -0.267 4.267 11 C 0.142 3.858 12 N -0.367 5.367 13 C -0.018 4.018 14 C 0.048 3.952 15 H 0.093 0.907 16 O -0.366 6.366 17 C -0.103 4.103 18 N -0.265 5.265 19 C -0.106 4.106 20 C 0.045 3.955 21 C -0.552 4.552 22 H 0.055 0.945 23 C -0.192 4.192 24 N -0.589 5.589 25 Si 0.768 3.232 26 H -0.193 1.193 27 H -0.206 1.206 28 H -0.173 1.173 29 C -0.282 4.282 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.152 0.848 41 H 0.236 0.764 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.232 0.768 45 H 0.121 0.879 46 H 0.062 0.938 47 H 0.038 0.962 48 H 0.062 0.938 49 H 0.103 0.897 50 H 0.005 0.995 51 H 0.043 0.957 52 H 0.075 0.925 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.083 -15.130 -26.122 34.204 hybrid contribution -1.082 0.352 -0.156 1.148 sum 15.001 -14.778 -26.279 33.675 Atomic orbital electron populations 1.21763 0.95677 1.02249 1.01532 1.21678 0.96353 0.93350 1.04023 1.22752 0.95887 0.94257 0.85277 0.90171 1.22365 0.94248 1.03053 1.03757 1.86079 1.83717 1.16911 1.37437 1.18729 0.92943 0.82464 0.93817 1.21205 1.13697 0.95576 0.98950 1.20985 0.93273 0.93352 0.97633 1.20777 1.11895 1.00476 0.93591 1.17606 0.90511 0.90085 0.87566 1.44687 1.71794 1.06087 1.14163 1.21992 1.02112 0.80411 0.97326 1.21967 0.92311 0.94346 0.86535 0.90669 1.86655 1.25824 1.75187 1.48920 1.22784 1.01250 0.95805 0.90460 1.61706 1.20246 1.12316 1.32265 1.22196 1.01028 0.86957 1.00417 1.19950 0.85770 0.95080 0.94658 1.21281 0.97607 1.39663 0.96664 0.94546 1.25866 1.00073 0.96261 0.97020 1.70052 1.19663 1.50075 1.19140 0.85749 0.77989 0.79285 0.80133 1.19319 1.20597 1.17283 1.19779 1.16029 0.92610 0.99788 0.91434 0.94171 0.92399 0.87647 0.91380 0.92159 0.88808 0.92244 0.84126 0.83376 0.84819 0.76419 0.89724 0.90595 0.76832 0.87869 0.93773 0.96246 0.93817 0.89724 0.99550 0.95745 0.92484 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.81 71.98 0.71 -1.33 16 2 C -0.12 -1.32 5.64 30.60 0.17 -1.15 16 3 C 0.07 1.04 2.23 30.60 0.07 1.11 16 4 H 0.08 1.01 6.31 -2.39 -0.02 1.00 16 5 C -0.18 -1.99 9.17 71.98 0.66 -1.33 16 6 O -0.33 -7.10 9.33 -92.38 -0.86 -7.96 16 7 C 0.17 3.80 6.59 22.49 0.15 3.95 16 8 C -0.27 -5.06 8.23 22.39 0.18 -4.87 16 9 C -0.03 -0.58 10.03 22.23 0.22 -0.36 16 10 C -0.24 -4.84 9.31 22.41 0.21 -4.63 16 11 C 0.25 5.77 6.65 38.20 0.25 6.03 16 12 N -0.74 -16.90 5.68 -339.46 -1.93 -18.83 16 13 C 0.11 2.13 4.55 86.38 0.39 2.52 16 14 C 0.11 2.92 3.02 30.59 0.09 3.01 16 15 H 0.08 2.50 6.55 -2.39 -0.02 2.48 16 16 O -0.56 -16.39 13.18 -148.98 -1.96 -18.35 16 17 C 0.03 0.72 4.63 86.30 0.40 1.12 16 18 N -0.54 -21.36 4.60 -927.04 -4.27 -25.63 16 19 C 0.04 1.52 9.32 127.69 1.19 2.71 16 20 C 0.17 8.24 3.64 85.56 0.31 8.55 16 21 C -0.51 -30.25 9.09 25.60 0.23 -30.01 16 22 H 0.04 2.40 7.34 -2.91 -0.02 2.38 16 23 C 0.00 0.29 5.47 84.65 0.46 0.75 16 24 N -0.95 -60.39 13.96 21.44 0.30 -60.10 16 25 Si 0.95 44.78 27.47 68.60 1.88 46.66 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 28 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 29 C -0.26 -6.47 9.83 22.49 0.22 -6.25 16 30 H 0.07 0.72 8.14 -2.38 -0.02 0.71 16 31 H 0.04 0.71 7.82 -2.39 -0.02 0.69 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.75 6.90 -2.39 -0.02 0.74 16 38 H 0.14 1.97 5.42 -2.91 -0.02 1.95 16 39 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.13 2.20 6.73 -2.91 -0.02 2.18 16 41 H 0.40 9.90 8.48 -92.71 -0.79 9.11 16 42 H 0.08 1.35 7.95 -2.38 -0.02 1.33 16 43 H 0.08 1.41 7.95 -2.39 -0.02 1.39 16 44 H 0.38 8.03 9.05 -74.06 -0.67 7.36 16 45 H 0.10 2.17 7.88 -2.39 -0.02 2.15 16 46 H 0.04 1.17 8.05 -2.39 -0.02 1.15 16 47 H 0.02 0.66 8.13 -2.39 -0.02 0.64 16 48 H 0.04 1.87 6.90 -2.38 -0.02 1.85 16 49 H 0.08 2.38 7.97 -2.39 -0.02 2.36 16 50 H -0.01 -0.62 7.17 -2.39 -0.02 -0.64 16 51 H 0.02 1.17 5.81 -2.39 -0.01 1.15 16 52 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 53 H 0.12 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -73.95 417.87 -1.52 -75.46 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -0.61 Total: 28.94 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 5.93 Total: -20.19 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -5.90 Total: -104.56 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -2.83 Total: -26.31 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -73.95 -1.52 -75.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566126202.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.034 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds