Wall clock time and date at job start Tue Mar 31 2020 20:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99994 * 2 1 4 4 C 1.53001 * 109.47178 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47499 * 59.99673 * 3 2 1 6 6 N 1.46904 * 109.46960 * 65.00165 * 5 3 2 7 7 C 1.46902 * 111.00127 * 180.02562 * 6 5 3 8 8 C 1.52998 * 109.47001 * 180.02562 * 7 6 5 9 9 H 1.08992 * 109.47365 * 59.99578 * 8 7 6 10 10 O 1.42898 * 109.47122 * 299.99906 * 8 7 6 11 11 C 1.52998 * 109.46904 * 180.02562 * 8 7 6 12 12 N 1.46902 * 109.47117 * 184.99566 * 11 8 7 13 13 C 1.46908 * 110.99753 * 66.04639 * 12 11 8 14 14 C 1.46896 * 111.00149 * 189.99691 * 12 11 8 15 15 C 1.50702 * 109.47080 * 170.00239 * 14 12 11 16 16 H 1.08000 * 120.00084 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99871 * 180.02562 * 15 14 12 18 18 N 1.31509 * 120.00392 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00096 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47010 * 89.99604 * 19 17 15 21 21 H 1.48496 * 109.47591 * 210.00234 * 19 17 15 22 22 H 1.48503 * 109.47130 * 330.00318 * 19 17 15 23 23 C 1.50706 * 109.47283 * 299.99700 * 3 2 1 24 24 C 1.38237 * 119.99744 * 330.00765 * 23 3 2 25 25 C 1.38235 * 119.99712 * 180.02562 * 24 23 3 26 26 C 1.38234 * 120.00220 * 359.94731 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00223 * 150.01975 * 23 3 2 29 29 H 1.08996 * 109.47108 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46757 * 300.00116 * 1 2 3 31 31 H 1.08999 * 109.46857 * 59.99738 * 1 2 3 32 32 H 1.08993 * 109.47154 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.46664 * 299.99653 * 4 3 2 34 34 H 1.08998 * 109.47218 * 59.99158 * 4 3 2 35 35 H 1.09007 * 109.47277 * 184.99609 * 5 3 2 36 36 H 1.08997 * 109.47386 * 305.00452 * 5 3 2 37 37 H 1.00901 * 110.99837 * 56.04147 * 6 5 3 38 38 H 1.08997 * 109.46680 * 299.99943 * 7 6 5 39 39 H 1.09002 * 109.47030 * 59.99995 * 7 6 5 40 40 H 0.96706 * 114.00007 * 300.00235 * 10 8 7 41 41 H 1.08997 * 109.47225 * 304.99622 * 11 8 7 42 42 H 1.08998 * 109.47020 * 65.00265 * 11 8 7 43 43 H 1.09003 * 109.46886 * 59.99735 * 13 12 11 44 44 H 1.08997 * 109.46924 * 179.97438 * 13 12 11 45 45 H 1.08998 * 109.46823 * 300.00289 * 13 12 11 46 46 H 1.08996 * 109.47685 * 290.00277 * 14 12 11 47 47 H 1.08997 * 109.47096 * 50.00580 * 14 12 11 48 48 H 0.96996 * 120.00589 * 179.97438 * 18 17 15 49 49 H 1.08005 * 120.00088 * 359.97438 * 24 23 3 50 50 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 51 51 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 52 52 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 53 53 H 1.07998 * 119.99975 * 0.02562 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5588 2.0648 1.2491 6 7 2.0938 1.4012 2.4456 7 6 1.6793 2.1040 3.6672 8 6 2.2549 1.3855 4.8892 9 1 3.3430 1.3768 4.8264 10 8 1.7692 0.0421 4.9244 11 6 1.8226 2.1171 6.1614 12 7 2.4714 1.4997 7.3258 13 6 3.9263 1.6993 7.2851 14 6 1.9044 2.0148 8.5792 15 6 2.4116 1.1922 9.7355 16 1 3.0880 0.3693 9.5572 17 6 2.0122 1.4901 11.0211 18 7 1.1882 2.4918 11.2383 19 14 2.6404 0.4700 12.4544 20 1 3.8981 1.0659 12.9724 21 1 1.6204 0.4513 13.5334 22 1 2.9024 -0.9182 11.9967 23 6 1.5657 2.0533 -1.2305 24 6 1.2798 1.3627 -2.3934 25 6 0.8725 2.0487 -3.5223 26 6 0.7500 3.4252 -3.4880 27 6 1.0405 4.1162 -2.3265 28 6 1.4440 3.4298 -1.1965 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9788 2.1803 -0.0011 33 1 3.8574 0.6436 0.8892 34 1 3.8568 0.6437 -0.8908 35 1 1.9293 3.0890 1.2055 36 1 0.4698 2.0739 1.2951 37 1 3.0986 1.3224 2.3966 38 1 2.0502 3.1286 3.6404 39 1 0.5911 2.1130 3.7296 40 1 0.8062 -0.0267 4.9803 41 1 2.1156 3.1649 6.0954 42 1 0.7402 2.0485 6.2700 43 1 4.1468 2.7668 7.2872 44 1 4.3816 1.2328 8.1586 45 1 4.3298 1.2468 6.3792 46 1 2.2041 3.0541 8.7136 47 1 0.8169 1.9526 8.5385 48 1 0.9069 2.7011 12.1426 49 1 1.3754 0.2872 -2.4202 50 1 0.6495 1.5093 -4.4309 51 1 0.4314 3.9611 -4.3699 52 1 0.9491 5.1921 -2.3010 53 1 1.6679 3.9694 -0.2881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571277632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:58 Heat of formation + Delta-G solvation = -54.603458 kcal Electronic energy + Delta-G solvation = -29332.585095 eV Core-core repulsion = 25397.711105 eV Total energy + Delta-G solvation = -3934.873991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.61524 -38.41286 -37.85959 -35.89158 -34.92884 -32.95495 -32.49053 -31.27019 -30.25254 -29.40700 -27.33787 -26.80163 -26.31014 -25.24895 -23.64264 -23.11884 -22.33800 -21.32216 -20.22541 -19.94894 -17.83693 -17.02861 -16.46158 -16.22555 -15.83442 -15.68508 -15.40102 -15.16775 -14.88036 -14.79141 -14.52821 -14.42963 -14.25777 -13.82150 -13.66008 -13.36050 -13.11796 -12.96746 -12.79077 -12.65810 -12.43202 -12.28472 -12.01384 -11.90603 -11.76741 -11.61991 -11.35717 -11.26772 -11.05487 -10.87139 -10.81122 -10.72153 -10.67581 -10.25552 -9.96872 -9.80020 -9.50581 -9.27441 -9.12651 -9.05489 -8.46460 -8.42336 -7.17780 -6.01219 -4.02071 0.93884 1.02758 3.33530 3.38480 3.39552 3.45042 3.48188 3.88236 4.33309 4.44183 4.46879 4.57980 4.63809 4.69769 4.76606 4.83103 4.89634 5.06471 5.15435 5.17296 5.22588 5.24843 5.28553 5.33853 5.37351 5.39952 5.45513 5.53025 5.58315 5.63430 5.66194 5.67597 5.69125 5.71377 5.91570 6.06505 6.08561 6.14358 6.17232 6.20225 6.31241 6.42814 6.61232 6.77410 6.81405 7.02990 7.24935 7.28685 7.33775 7.82340 8.07323 8.17687 8.23647 8.57300 9.06041 9.62097 11.09753 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029193 B = 0.001801 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.896191 B =15541.197434 C =15790.682040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.161 3.839 4 C -0.139 4.139 5 C 0.034 3.966 6 N -0.668 5.668 7 C 0.026 3.974 8 C 0.118 3.882 9 H 0.092 0.908 10 O -0.534 6.534 11 C 0.025 3.975 12 N -0.529 5.529 13 C 0.036 3.964 14 C 0.193 3.807 15 C -0.505 4.505 16 H 0.064 0.936 17 C 0.053 3.947 18 N -0.901 5.901 19 Si 0.898 3.102 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.272 1.272 23 C -0.109 4.109 24 C -0.101 4.101 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.115 4.115 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.343 0.657 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.368 0.632 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.007 0.993 44 H 0.075 0.925 45 H 0.046 0.954 46 H -0.012 1.012 47 H 0.028 0.972 48 H 0.261 0.739 49 H 0.128 0.872 50 H 0.122 0.878 51 H 0.120 0.880 52 H 0.122 0.878 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 2.474 -31.028 31.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.274 6.274 3 C 0.121 3.879 4 C -0.196 4.196 5 C -0.096 4.096 6 N -0.300 5.300 7 C -0.104 4.104 8 C 0.057 3.943 9 H 0.110 0.890 10 O -0.337 6.337 11 C -0.105 4.105 12 N -0.253 5.253 13 C -0.112 4.112 14 C 0.068 3.932 15 C -0.543 4.543 16 H 0.082 0.918 17 C -0.147 4.147 18 N -0.541 5.541 19 Si 0.726 3.274 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.110 4.110 24 C -0.119 4.119 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.139 4.139 28 C -0.133 4.133 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.163 0.837 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.214 0.786 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.026 0.974 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.006 0.994 47 H 0.046 0.954 48 H 0.070 0.930 49 H 0.146 0.854 50 H 0.140 0.860 51 H 0.138 0.862 52 H 0.140 0.860 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.519 1.290 -30.875 30.907 hybrid contribution 0.040 1.884 0.852 2.068 sum -0.479 3.174 -30.023 30.194 Atomic orbital electron populations 1.22794 0.81476 1.02602 1.00119 1.88002 1.19520 1.25428 1.94492 1.20236 0.94419 0.83333 0.89894 1.21778 0.91548 1.02491 1.03829 1.22621 1.01101 0.95387 0.90446 1.60287 1.16976 1.52645 1.00100 1.22747 1.01234 0.95489 0.90931 1.21852 0.98753 0.83040 0.90634 0.89043 1.86601 1.26047 1.24659 1.96417 1.22730 0.99903 0.95451 0.92402 1.62021 1.03151 1.57666 1.02474 1.22258 0.89891 0.97634 1.01453 1.19742 0.95240 0.93425 0.84836 1.21177 1.27847 1.14873 0.90437 0.91764 1.24999 0.95293 0.95443 0.99010 1.69955 1.34014 1.28906 1.21182 0.86486 0.78349 0.80729 0.81800 1.20791 1.21282 1.19693 1.20435 1.00345 0.94165 0.96055 1.21039 0.98295 1.00473 0.92050 1.21177 1.00055 0.94464 0.98312 1.21193 1.00030 0.94519 0.98122 1.21156 0.99651 0.99934 0.93129 1.21152 0.99737 0.93696 0.98669 0.89748 0.93489 0.94214 0.91315 0.90410 0.91449 0.94322 0.90380 0.83742 0.94826 0.90814 0.78631 0.95644 0.91166 0.97434 0.90652 0.93494 0.99375 0.95363 0.92981 0.85412 0.86009 0.86150 0.86023 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.05 101.05 1.02 1.26 16 2 O -0.36 -3.84 9.48 -35.23 -0.33 -4.17 16 3 C 0.16 1.47 0.74 -91.77 -0.07 1.40 16 4 C -0.14 -1.16 8.37 37.16 0.31 -0.85 16 5 C 0.03 0.31 3.95 -3.82 -0.02 0.30 16 6 N -0.67 -7.21 6.24 -113.78 -0.71 -7.92 16 7 C 0.03 0.30 5.35 -3.82 -0.02 0.28 16 8 C 0.12 1.70 3.13 -26.73 -0.08 1.61 16 9 H 0.09 1.36 6.34 -51.93 -0.33 1.03 16 10 O -0.53 -8.64 13.15 -35.23 -0.46 -9.11 16 11 C 0.03 0.44 4.59 -3.82 -0.02 0.42 16 12 N -0.53 -11.59 4.70 -244.37 -1.15 -12.74 16 13 C 0.04 0.72 9.15 60.07 0.55 1.27 16 14 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 15 C -0.50 -14.44 8.46 -34.44 -0.29 -14.73 16 16 H 0.06 1.83 7.12 -52.49 -0.37 1.46 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 19 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.11 -0.93 4.02 -104.62 -0.42 -1.35 16 24 C -0.10 -0.83 7.77 -39.58 -0.31 -1.14 16 25 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 26 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 27 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 28 C -0.11 -0.91 9.14 -39.58 -0.36 -1.27 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.45 6.31 -51.93 -0.33 0.12 16 31 H 0.04 0.33 6.04 -51.93 -0.31 0.02 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.69 6.52 -51.93 -0.34 0.35 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.04 0.32 6.21 -51.93 -0.32 0.00 16 36 H 0.08 0.76 6.29 -51.93 -0.33 0.43 16 37 H 0.34 3.59 6.62 -39.29 -0.26 3.33 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.37 5.04 9.05 45.56 0.41 5.45 16 41 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 43 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 45 H 0.05 0.81 6.37 -51.93 -0.33 0.48 16 46 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 47 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.13 1.04 7.40 -52.48 -0.39 0.65 16 50 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 51 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 52 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 53 H 0.12 0.87 6.05 -52.49 -0.32 0.55 16 LS Contribution 413.26 15.07 6.23 6.23 Total: -1.00 -32.48 413.26 -9.91 -42.39 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -8.17 Total: 4.73 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -1.02 Total: -10.06 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -1.12 Total: -46.93 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.80 Total: -13.28 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.48 -9.91 -42.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571277632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.212 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds