Wall clock time and date at job start Tue Mar 31 2020 20:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00343 * 2 1 4 4 C 1.52996 * 109.47636 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47041 * 300.00765 * 3 2 1 6 6 N 1.46901 * 109.46769 * 299.99294 * 5 3 2 7 7 C 1.46906 * 110.99793 * 180.02562 * 6 5 3 8 8 C 1.52995 * 109.46978 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47639 * 60.00040 * 8 7 6 10 10 O 1.42900 * 109.47121 * 299.99679 * 8 7 6 11 11 C 1.53007 * 109.47182 * 180.02562 * 8 7 6 12 12 N 1.46897 * 109.47064 * 184.99687 * 11 8 7 13 13 C 1.46906 * 111.00056 * 66.04842 * 12 11 8 14 14 C 1.46899 * 110.99585 * 189.99888 * 12 11 8 15 15 C 1.50706 * 109.46964 * 170.00465 * 14 12 11 16 16 H 1.08001 * 120.00068 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00076 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99851 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99934 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47215 * 60.00010 * 19 17 15 21 21 H 1.48505 * 109.46934 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47278 * 299.99966 * 19 17 15 23 23 C 1.50703 * 109.46869 * 60.00304 * 3 2 1 24 24 C 1.38235 * 120.00136 * 209.72888 * 23 3 2 25 25 C 1.38228 * 119.99890 * 179.78601 * 24 23 3 26 26 C 1.38231 * 120.00295 * 0.44182 * 25 24 23 27 27 C 1.38234 * 120.00053 * 359.81230 * 26 25 24 28 28 C 1.38232 * 119.99684 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.46986 * 299.99277 * 1 2 3 30 30 H 1.08995 * 109.47308 * 59.99708 * 1 2 3 31 31 H 1.09002 * 109.47309 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47554 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.47108 * 300.00231 * 4 3 2 34 34 H 1.09000 * 109.46870 * 60.00125 * 4 3 2 35 35 H 1.09002 * 109.47398 * 59.99589 * 5 3 2 36 36 H 1.09001 * 109.47194 * 179.97438 * 5 3 2 37 37 H 1.00899 * 111.00283 * 303.95539 * 6 5 3 38 38 H 1.08995 * 109.47087 * 299.99901 * 7 6 5 39 39 H 1.09002 * 109.46903 * 59.99922 * 7 6 5 40 40 H 0.96701 * 114.00644 * 300.00239 * 10 8 7 41 41 H 1.08998 * 109.46492 * 304.99755 * 11 8 7 42 42 H 1.09000 * 109.46532 * 64.99742 * 11 8 7 43 43 H 1.08999 * 109.46897 * 59.99268 * 13 12 11 44 44 H 1.08994 * 109.47118 * 179.97438 * 13 12 11 45 45 H 1.08997 * 109.46542 * 299.99800 * 13 12 11 46 46 H 1.09002 * 109.47221 * 289.99957 * 14 12 11 47 47 H 1.09000 * 109.47505 * 50.00272 * 14 12 11 48 48 H 0.97003 * 119.99678 * 179.97438 * 18 17 15 49 49 H 1.08000 * 119.99506 * 0.02562 * 24 23 3 50 50 H 1.08010 * 119.99821 * 180.27706 * 25 24 23 51 51 H 1.08004 * 120.00316 * 179.83125 * 26 25 24 52 52 H 1.07996 * 120.00365 * 179.97438 * 27 26 25 53 53 H 1.08005 * 119.99929 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 1.5587 2.0648 -1.2492 6 7 1.9922 1.3358 -2.4486 7 6 1.5756 2.0374 -3.6702 8 6 2.0434 1.2495 -4.8955 9 1 1.5992 0.2542 -4.8788 10 8 3.4677 1.1360 -4.8736 11 6 1.6101 1.9806 -6.1679 12 7 1.9532 1.1663 -7.3414 13 6 1.1692 -0.0757 -7.3678 14 6 1.7718 1.9299 -8.5831 15 6 2.3597 1.1592 -9.7371 16 1 2.8222 0.1985 -9.5652 17 6 2.3080 1.6811 -11.0123 18 7 1.7452 2.8512 -11.2216 19 14 3.0373 0.7261 -12.4425 20 1 2.3510 -0.5852 -12.5635 21 1 2.8538 1.4980 -13.6979 22 1 4.4863 0.5062 -12.2034 23 6 1.5657 2.0532 1.2305 24 6 1.4490 3.4303 1.1981 25 6 1.0370 4.1157 2.3255 26 6 0.7503 3.4251 3.4881 27 6 0.8720 2.0486 3.5222 28 6 1.2798 1.3627 2.3935 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.9788 2.1803 -0.0011 33 1 3.8575 0.6435 0.8891 34 1 3.8567 0.6439 -0.8909 35 1 0.4721 2.1509 -1.2491 36 1 2.0017 3.0607 -1.2489 37 1 2.9900 1.1865 -2.4402 38 1 0.4892 2.1236 -3.6872 39 1 2.0194 3.0329 -3.6867 40 1 3.9303 1.9851 -4.8867 41 1 0.5331 2.1462 -6.1428 42 1 2.1240 2.9400 -6.2284 43 1 0.1071 0.1659 -7.4084 44 1 1.4426 -0.6593 -8.2468 45 1 1.3759 -0.6550 -6.4679 46 1 0.7081 2.0913 -8.7583 47 1 2.2756 2.8924 -8.4948 48 1 1.7092 3.2185 -12.1186 49 1 1.6761 3.9701 0.2907 50 1 0.9415 5.1913 2.2987 51 1 0.4310 3.9610 4.3698 52 1 0.6484 1.5090 4.4306 53 1 1.3753 0.2872 2.4202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571277634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:05 Heat of formation + Delta-G solvation = -82.005831 kcal Electronic energy + Delta-G solvation = -29339.129686 eV Core-core repulsion = 25403.067439 eV Total energy + Delta-G solvation = -3936.062247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.25103 -39.60817 -38.69491 -37.35911 -35.94830 -34.62368 -33.70532 -31.81532 -31.28455 -30.37785 -29.09167 -28.01418 -27.11534 -26.54898 -24.93135 -23.82780 -23.06552 -22.59060 -21.80669 -20.72032 -18.58124 -18.41785 -17.92373 -17.20436 -17.00075 -16.72971 -16.42620 -16.31661 -16.01380 -15.85748 -15.61810 -15.41604 -15.28308 -15.05834 -14.79083 -14.32308 -14.12245 -13.90613 -13.81684 -13.72164 -13.40409 -13.32305 -13.19769 -12.96220 -12.88684 -12.73747 -12.57612 -12.56080 -12.48479 -12.38784 -12.25222 -12.01121 -11.87929 -11.62001 -11.46857 -11.42318 -10.81241 -10.61648 -10.43565 -9.82371 -9.67611 -9.32306 -8.96723 -8.20934 -6.30816 0.38539 0.48018 1.41008 1.44309 1.52286 2.40119 2.72403 2.82905 3.03206 3.11445 3.41266 3.68461 3.69707 3.80207 3.92588 4.05878 4.11912 4.13328 4.16050 4.25871 4.29371 4.41362 4.49517 4.51674 4.55307 4.58873 4.61684 4.67547 4.68057 4.72729 4.74953 4.79769 4.80982 4.88885 4.96993 5.05959 5.07762 5.13982 5.15949 5.17266 5.25327 5.32007 5.54391 5.59780 5.61663 5.64408 5.97723 6.05384 6.08591 6.31240 6.31692 6.48229 6.63446 6.84823 6.96603 7.38762 8.89751 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029319 B = 0.001803 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.788979 B =15527.396126 C =15802.307175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.161 3.839 4 C -0.137 4.137 5 C 0.040 3.960 6 N -0.681 5.681 7 C 0.040 3.960 8 C 0.130 3.870 9 H 0.092 0.908 10 O -0.559 6.559 11 C 0.025 3.975 12 N -0.540 5.540 13 C 0.040 3.960 14 C 0.208 3.792 15 C -0.525 4.525 16 H 0.061 0.939 17 C 0.001 3.999 18 N -0.934 5.934 19 Si 0.970 3.030 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.269 1.269 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.127 4.127 28 C -0.113 4.113 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.350 0.650 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.379 0.621 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.011 0.989 44 H 0.055 0.945 45 H 0.075 0.925 46 H -0.039 1.039 47 H 0.005 0.995 48 H 0.265 0.735 49 H 0.130 0.870 50 H 0.139 0.861 51 H 0.141 0.859 52 H 0.139 0.861 53 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 1.323 32.174 32.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.121 3.879 4 C -0.194 4.194 5 C -0.089 4.089 6 N -0.315 5.315 7 C -0.091 4.091 8 C 0.070 3.930 9 H 0.110 0.890 10 O -0.365 6.365 11 C -0.104 4.104 12 N -0.264 5.264 13 C -0.108 4.108 14 C 0.082 3.918 15 C -0.563 4.563 16 H 0.079 0.921 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.194 1.194 23 C -0.118 4.118 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.143 4.143 27 C -0.145 4.145 28 C -0.131 4.131 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.171 0.829 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.227 0.773 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.029 0.971 44 H 0.074 0.926 45 H 0.093 0.907 46 H -0.022 1.022 47 H 0.023 0.977 48 H 0.073 0.927 49 H 0.148 0.852 50 H 0.157 0.843 51 H 0.159 0.841 52 H 0.156 0.844 53 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.169 0.091 32.076 32.149 hybrid contribution -0.337 1.628 -1.200 2.050 sum -2.506 1.719 30.876 31.025 Atomic orbital electron populations 1.22797 0.80919 1.02977 1.00057 1.87958 1.20257 1.26574 1.94602 1.20289 0.94575 0.82825 0.90179 1.21781 0.91253 1.03128 1.03282 1.22562 1.01050 0.95520 0.89772 1.60250 1.21571 1.49377 1.00262 1.22489 1.01394 0.95369 0.89800 1.21759 0.81461 0.99465 0.90310 0.89014 1.86582 1.17768 1.35513 1.96632 1.22828 0.98516 0.97157 0.91908 1.61943 1.55922 1.06177 1.02348 1.22225 0.93860 0.92781 1.01930 1.19393 0.92587 0.92856 0.87010 1.21445 1.37281 1.05245 0.92331 0.92118 1.25917 0.95841 0.96081 1.01869 1.70075 1.45691 1.19026 1.22670 0.85429 0.79094 0.78486 0.77563 1.19326 1.20698 1.19377 1.20395 1.01113 0.94497 0.95822 1.21278 0.99951 0.93485 0.99419 1.21439 0.99069 1.00982 0.92974 1.21500 0.99440 0.94533 0.98808 1.21424 0.99566 0.94920 0.98596 1.21098 0.99049 1.00415 0.92553 0.93675 0.94122 0.89194 0.90066 0.91691 0.91236 0.90979 0.93011 0.82895 0.90279 0.93805 0.77328 0.95007 0.91255 0.97083 0.92639 0.90650 1.02168 0.97719 0.92672 0.85171 0.84284 0.84102 0.84362 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.04 113.37 1.14 1.65 16 2 O -0.38 -7.87 9.40 -148.98 -1.40 -9.27 16 3 C 0.16 2.80 0.73 -11.54 -0.01 2.79 16 4 C -0.14 -2.20 8.50 71.98 0.61 -1.59 16 5 C 0.04 0.69 3.61 86.30 0.31 1.01 16 6 N -0.68 -13.92 6.35 -513.88 -3.26 -17.19 16 7 C 0.04 0.84 5.39 86.30 0.47 1.31 16 8 C 0.13 3.60 3.20 30.60 0.10 3.70 16 9 H 0.09 2.80 6.34 -2.39 -0.02 2.79 16 10 O -0.56 -16.18 12.62 -148.98 -1.88 -18.06 16 11 C 0.03 0.86 4.59 86.31 0.40 1.26 16 12 N -0.54 -23.82 4.70 -927.03 -4.36 -28.17 16 13 C 0.04 1.63 9.15 127.69 1.17 2.79 16 14 C 0.21 11.28 4.72 85.56 0.40 11.68 16 15 C -0.52 -30.44 8.46 25.60 0.22 -30.22 16 16 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 17 C 0.00 0.05 5.46 84.65 0.46 0.51 16 18 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 19 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 C -0.12 -1.89 4.01 -19.86 -0.08 -1.97 16 24 C -0.12 -1.77 9.14 22.27 0.20 -1.57 16 25 C -0.13 -1.58 10.05 22.27 0.22 -1.35 16 26 C -0.12 -1.46 10.05 22.27 0.22 -1.24 16 27 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 28 C -0.11 -1.77 7.77 22.27 0.17 -1.60 16 29 H 0.04 0.73 6.05 -2.38 -0.01 0.72 16 30 H 0.04 0.76 6.42 -2.39 -0.02 0.75 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.21 6.57 -2.39 -0.02 1.19 16 35 H 0.07 1.31 6.54 -2.39 -0.02 1.30 16 36 H 0.05 0.77 6.51 -2.39 -0.02 0.75 16 37 H 0.35 7.22 6.16 -89.69 -0.55 6.66 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.38 8.60 9.05 -74.06 -0.67 7.93 16 41 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 42 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.05 2.43 6.76 -2.39 -0.02 2.41 16 45 H 0.07 2.62 6.37 -2.39 -0.02 2.60 16 46 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 47 H 0.00 0.27 7.93 -2.39 -0.02 0.25 16 48 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 49 H 0.13 1.59 6.17 -2.91 -0.02 1.57 16 50 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 51 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 52 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 53 H 0.12 1.97 7.40 -2.91 -0.02 1.95 16 Total: -1.00 -68.88 413.01 -2.68 -71.56 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.32 Total: 24.79 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 6.23 Total: -14.26 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -7.33 Total: -101.76 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -3.28 Total: -27.32 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -68.88 -2.68 -71.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571277634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.448 kcal (2) G-P(sol) polarization free energy of solvation -68.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds