Wall clock time and date at job start Tue Mar 31 2020 19:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47420 * 2 1 4 4 H 1.08997 * 109.46708 * 306.43595 * 3 2 1 5 5 N 1.46894 * 109.46885 * 66.43311 * 3 2 1 6 6 C 1.46901 * 110.99940 * 202.95848 * 5 3 2 7 7 C 1.52998 * 109.47139 * 180.96848 * 6 5 3 8 8 H 1.08995 * 109.47744 * 305.00776 * 7 6 5 9 9 O 1.42903 * 109.46872 * 65.00614 * 7 6 5 10 10 C 1.53004 * 109.47382 * 185.00280 * 7 6 5 11 11 N 1.46897 * 109.47378 * 175.59481 * 10 7 6 12 12 C 1.46897 * 111.00019 * 164.54401 * 11 10 7 13 13 C 1.46902 * 110.99841 * 288.49448 * 11 10 7 14 14 C 1.50697 * 109.47114 * 169.99954 * 13 11 10 15 15 H 1.07993 * 120.00298 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99642 * 180.02562 * 14 13 11 17 17 N 1.31513 * 120.00320 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99752 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47117 * 89.99790 * 18 16 14 20 20 H 1.48501 * 109.47155 * 210.00272 * 18 16 14 21 21 H 1.48506 * 109.46958 * 329.99986 * 18 16 14 22 22 C 1.50700 * 109.47002 * 186.43302 * 3 2 1 23 23 C 1.38265 * 119.94691 * 279.72617 * 22 3 2 24 24 C 1.38148 * 120.05268 * 179.72899 * 23 22 3 25 25 C 1.38733 * 119.94664 * 0.54809 * 24 23 22 26 26 O 1.35894 * 120.05717 * 179.74999 * 25 24 23 27 27 C 1.42902 * 117.00088 * 359.97438 * 26 25 24 28 28 C 1.38730 * 119.88757 * 359.72486 * 25 24 23 29 29 C 1.38150 * 119.94328 * 0.02562 * 28 25 24 30 30 H 1.09001 * 109.46694 * 53.40730 * 1 2 3 31 31 H 1.08990 * 109.47277 * 173.40464 * 1 2 3 32 32 H 1.09001 * 109.46941 * 293.40715 * 1 2 3 33 33 H 1.09008 * 109.47602 * 239.99904 * 2 1 3 34 34 H 1.09004 * 109.47292 * 119.99978 * 2 1 3 35 35 H 1.00898 * 111.00350 * 326.91556 * 5 3 2 36 36 H 1.09006 * 109.46795 * 60.97323 * 6 5 3 37 37 H 1.08999 * 109.47584 * 300.97074 * 6 5 3 38 38 H 0.96698 * 114.00308 * 60.00342 * 9 7 6 39 39 H 1.08998 * 109.46738 * 55.59038 * 10 7 6 40 40 H 1.09000 * 109.46917 * 295.59608 * 10 7 6 41 41 H 1.09000 * 109.47246 * 185.11316 * 12 11 10 42 42 H 1.08997 * 109.47345 * 65.11142 * 12 11 10 43 43 H 1.09000 * 109.47054 * 305.10940 * 12 11 10 44 44 H 1.08997 * 109.46987 * 290.00453 * 13 11 10 45 45 H 1.09003 * 109.46873 * 49.99788 * 13 11 10 46 46 H 0.97000 * 119.99940 * 180.02562 * 17 16 14 47 47 H 1.07997 * 119.96841 * 0.02562 * 23 22 3 48 48 H 1.07999 * 120.02288 * 180.27033 * 24 23 22 49 49 H 1.08995 * 109.46956 * 59.99840 * 27 26 25 50 50 H 1.08991 * 109.47360 * 180.02562 * 27 26 25 51 51 H 1.09008 * 109.47004 * 300.00157 * 27 26 25 52 52 H 1.08002 * 120.02837 * 179.97438 * 28 25 24 53 53 H 1.08002 * 119.97101 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5857 1.9885 -0.8268 5 7 1.6812 2.0887 1.2694 6 6 1.6459 3.5501 1.1247 7 6 1.2932 4.1875 2.4701 8 1 0.3587 3.7645 2.8388 9 8 2.3377 3.9259 3.4096 10 6 1.1339 5.6988 2.2925 11 7 0.6926 6.2970 3.5594 12 6 0.8775 7.7543 3.5462 13 6 -0.7043 5.9463 3.8489 14 6 -1.0458 6.3638 5.2560 15 1 -0.3001 6.8423 5.8734 16 6 -2.3106 6.1349 5.7551 17 7 -3.2187 5.5518 5.0035 18 14 -2.7343 6.6531 7.4992 19 1 -3.2594 8.0420 7.4891 20 1 -3.7655 5.7379 8.0508 21 1 -1.5146 6.5911 8.3440 22 6 3.5386 1.4454 -0.1592 23 6 4.3493 1.2003 0.9337 24 6 5.7232 1.1969 0.7891 25 6 6.2896 1.4509 -0.4516 26 8 7.6409 1.4531 -0.5953 27 6 8.4181 1.1866 0.5739 28 6 5.4741 1.7020 -1.5454 29 6 4.1007 1.6992 -1.3967 30 1 -0.3633 0.6126 -0.8251 31 1 -0.3633 -1.0208 -0.1180 32 1 -0.3633 0.4083 0.9431 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.8013 1.7385 1.6175 36 1 0.8938 3.8239 0.3847 37 1 2.6230 3.9068 0.7988 38 1 3.2003 4.2747 3.1460 39 1 0.3921 5.8975 1.5190 40 1 2.0897 6.1329 1.9992 41 1 0.6287 8.1610 4.5263 42 1 0.2253 8.1964 2.7931 43 1 1.9157 7.9866 3.3093 44 1 -1.3609 6.4610 3.1475 45 1 -0.8369 4.8691 3.7471 46 1 -4.1085 5.3911 5.3546 47 1 3.9079 1.0067 1.9002 48 1 6.3558 1.0011 1.6422 49 1 8.1663 0.1990 0.9603 50 1 9.4778 1.2188 0.3209 51 1 8.2030 1.9392 1.3325 52 1 5.9127 1.9004 -2.5123 53 1 3.4654 1.8943 -2.2481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578328601.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:47 Heat of formation + Delta-G solvation = -85.097405 kcal Electronic energy + Delta-G solvation = -29495.975826 eV Core-core repulsion = 25559.779518 eV Total energy + Delta-G solvation = -3936.196307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.11448 -39.76578 -38.93891 -37.35903 -36.58139 -34.59752 -33.49338 -31.95395 -31.39295 -30.51586 -29.29588 -28.32457 -27.10298 -25.93885 -24.91066 -23.64807 -22.88970 -22.68916 -21.76107 -20.99977 -19.02436 -18.60740 -17.67212 -17.40611 -16.79321 -16.62625 -16.60076 -16.55517 -16.28386 -15.88722 -15.64352 -15.35777 -15.09574 -14.96403 -14.58434 -14.39823 -14.23261 -13.98352 -13.86924 -13.69333 -13.65333 -13.26893 -13.11769 -12.92843 -12.80136 -12.70980 -12.60400 -12.55869 -12.32910 -12.22025 -12.15428 -11.97729 -11.80205 -11.68951 -11.50270 -11.47457 -11.29826 -10.65531 -10.59669 -9.86252 -9.35080 -8.97734 -8.94495 -8.20159 -6.29033 0.46537 0.54173 1.39884 1.41777 1.53487 2.40585 2.43425 2.82835 2.98537 3.12542 3.43906 3.74404 3.83196 3.97000 4.00675 4.03442 4.10437 4.20474 4.25833 4.35358 4.37970 4.40548 4.43650 4.47371 4.54838 4.58344 4.60722 4.62038 4.71869 4.75155 4.76947 4.77741 4.84103 4.88529 5.07135 5.10128 5.13162 5.18803 5.22497 5.26557 5.31053 5.36259 5.42319 5.52568 5.65322 5.72587 5.89704 6.06783 6.16993 6.34376 6.41656 6.51192 6.65525 6.86384 7.11531 7.40048 8.90935 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.002386 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.138558 B =11733.198076 C =12742.287194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C 0.133 3.867 4 H 0.053 0.947 5 N -0.677 5.677 6 C 0.047 3.953 7 C 0.128 3.872 8 H 0.063 0.937 9 O -0.550 6.550 10 C 0.027 3.973 11 N -0.543 5.543 12 C 0.041 3.959 13 C 0.209 3.791 14 C -0.522 4.522 15 H 0.059 0.941 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.267 1.267 22 C -0.116 4.116 23 C -0.052 4.052 24 C -0.216 4.216 25 C 0.110 3.890 26 O -0.337 6.337 27 C 0.020 3.980 28 C -0.165 4.165 29 C -0.080 4.080 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.343 0.657 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.375 0.625 39 H 0.026 0.974 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.008 0.992 43 H 0.081 0.919 44 H -0.042 1.042 45 H 0.007 0.993 46 H 0.264 0.736 47 H 0.127 0.873 48 H 0.137 0.863 49 H 0.062 0.938 50 H 0.118 0.882 51 H 0.059 0.941 52 H 0.137 0.863 53 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.785 -10.710 -15.004 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C 0.024 3.976 4 H 0.071 0.929 5 N -0.310 5.310 6 C -0.083 4.083 7 C 0.068 3.932 8 H 0.081 0.919 9 O -0.355 6.355 10 C -0.102 4.102 11 N -0.267 5.267 12 C -0.107 4.107 13 C 0.083 3.917 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.792 3.208 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.117 4.117 23 C -0.070 4.070 24 C -0.235 4.235 25 C 0.065 3.935 26 O -0.252 6.252 27 C -0.074 4.074 28 C -0.184 4.184 29 C -0.099 4.099 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.163 0.837 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.222 0.778 39 H 0.044 0.956 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.099 0.901 44 H -0.025 1.025 45 H 0.025 0.975 46 H 0.073 0.927 47 H 0.144 0.856 48 H 0.155 0.845 49 H 0.080 0.920 50 H 0.136 0.864 51 H 0.078 0.922 52 H 0.155 0.845 53 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 19.169 -11.230 -14.221 26.378 hybrid contribution -1.604 0.957 -0.306 1.892 sum 17.565 -10.273 -14.527 25.002 Atomic orbital electron populations 1.21842 0.95412 1.02610 1.01572 1.21631 0.95759 0.94735 1.03064 1.20405 0.91207 0.95310 0.90681 0.92889 1.60340 1.38665 1.03998 1.28016 1.22482 1.01406 0.88703 0.95701 1.21647 0.90714 0.92256 0.88602 0.91929 1.86631 1.20095 1.80953 1.47837 1.22799 1.00545 0.96324 0.90559 1.61951 1.22829 1.10446 1.31446 1.22210 1.00321 0.87624 1.00526 1.19392 0.83060 0.94428 0.94803 1.21465 0.96737 1.38649 0.99184 0.92257 1.25896 0.96209 0.95293 1.02303 1.70074 1.04727 1.44070 1.38566 0.85413 0.78010 0.78180 0.79212 1.19685 1.20645 1.19149 1.19813 0.95202 1.03226 0.93470 1.20880 0.91996 0.95110 0.99050 1.21430 0.96523 1.08655 0.96856 1.19243 0.82908 0.96954 0.94444 1.86020 1.15024 1.86445 1.37673 1.23283 0.96137 1.01198 0.86802 1.20549 0.92876 1.06854 0.98127 1.21016 0.93857 0.97643 0.97355 0.92522 0.91388 0.93350 0.90310 0.91514 0.83708 0.94391 0.89928 0.77753 0.95610 0.88904 0.92652 0.97361 0.90072 1.02452 0.97460 0.92736 0.85552 0.84537 0.91981 0.86359 0.92202 0.84544 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.63 71.98 0.69 -1.95 16 2 C -0.11 -1.95 5.50 30.59 0.17 -1.78 16 3 C 0.13 2.56 2.23 44.17 0.10 2.66 16 4 H 0.05 0.99 7.69 -2.39 -0.02 0.97 16 5 N -0.68 -15.85 5.47 -495.45 -2.71 -18.56 16 6 C 0.05 1.17 5.11 86.30 0.44 1.62 16 7 C 0.13 4.21 3.20 30.59 0.10 4.31 16 8 H 0.06 2.56 6.44 -2.39 -0.02 2.55 16 9 O -0.55 -18.73 13.23 -148.98 -1.97 -20.70 16 10 C 0.03 0.92 4.61 86.31 0.40 1.32 16 11 N -0.54 -23.80 4.65 -927.07 -4.31 -28.11 16 12 C 0.04 1.60 9.33 127.69 1.19 2.80 16 13 C 0.21 11.40 4.57 85.56 0.39 11.79 16 14 C -0.52 -30.47 8.53 25.60 0.22 -30.25 16 15 H 0.06 3.43 7.10 -2.91 -0.02 3.41 16 16 C 0.00 0.05 5.46 84.66 0.46 0.51 16 17 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 18 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 C -0.12 -2.31 4.60 -19.85 -0.09 -2.40 16 23 C -0.05 -1.11 9.32 22.25 0.21 -0.90 16 24 C -0.22 -4.29 9.04 22.37 0.20 -4.09 16 25 C 0.11 2.25 6.69 22.51 0.15 2.40 16 26 O -0.34 -6.52 10.50 -92.35 -0.97 -7.49 16 27 C 0.02 0.24 9.81 113.37 1.11 1.35 16 28 C -0.17 -3.16 9.99 22.37 0.22 -2.94 16 29 C -0.08 -1.45 9.66 22.26 0.22 -1.23 16 30 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.93 6.72 -2.39 -0.02 0.91 16 33 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.34 8.56 6.69 -89.70 -0.60 7.96 16 36 H 0.04 0.92 8.08 -2.38 -0.02 0.91 16 37 H 0.08 1.90 7.90 -2.39 -0.02 1.88 16 38 H 0.38 9.80 9.05 -74.06 -0.67 9.13 16 39 H 0.03 0.91 8.06 -2.39 -0.02 0.89 16 40 H 0.09 2.59 7.89 -2.39 -0.02 2.57 16 41 H 0.05 2.32 6.89 -2.39 -0.02 2.30 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.08 2.50 7.98 -2.39 -0.02 2.48 16 44 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 45 H 0.01 0.43 6.31 -2.39 -0.02 0.42 16 46 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.13 2.92 7.70 -2.91 -0.02 2.89 16 48 H 0.14 2.26 6.30 -2.91 -0.02 2.24 16 49 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 50 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 51 H 0.06 0.66 7.66 -2.38 -0.02 0.64 16 52 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 53 H 0.14 1.95 8.03 -2.91 -0.02 1.93 16 Total: -1.00 -70.06 422.74 -1.85 -71.91 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.38 Total: 29.07 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 6.18 Total: -16.79 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -6.74 Total: -103.31 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -2.94 Total: -28.19 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.06 -1.85 -71.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578328601.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.191 kcal (2) G-P(sol) polarization free energy of solvation -70.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds