Wall clock time and date at job start Tue Mar 31 2020 19:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47135 * 2 1 4 4 H 1.08994 * 109.47466 * 54.76938 * 3 2 1 5 5 N 1.46910 * 109.46730 * 294.77407 * 3 2 1 6 6 C 1.46897 * 110.99782 * 155.43087 * 5 3 2 7 7 C 1.52996 * 109.47212 * 185.26268 * 6 5 3 8 8 H 1.08999 * 109.47679 * 59.99458 * 7 6 5 9 9 O 1.42910 * 109.46772 * 299.99953 * 7 6 5 10 10 C 1.53001 * 109.47422 * 180.02562 * 7 6 5 11 11 N 1.46897 * 109.47104 * 180.38998 * 10 7 6 12 12 C 1.46904 * 110.99763 * 199.20484 * 11 10 7 13 13 C 1.46893 * 111.00328 * 75.25074 * 11 10 7 14 14 C 1.50697 * 109.47495 * 189.99819 * 13 11 10 15 15 H 1.07994 * 120.00025 * 0.02562 * 14 13 11 16 16 C 1.37879 * 120.00142 * 180.02562 * 14 13 11 17 17 N 1.31511 * 120.00252 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.46932 * 89.99889 * 18 16 14 20 20 H 1.48492 * 109.47320 * 209.99745 * 18 16 14 21 21 H 1.48502 * 109.47203 * 330.00105 * 18 16 14 22 22 C 1.50702 * 109.47149 * 174.77932 * 3 2 1 23 23 C 1.38266 * 119.94538 * 79.72568 * 22 3 2 24 24 C 1.38145 * 120.05330 * 179.72683 * 23 22 3 25 25 C 1.38737 * 119.94214 * 0.54510 * 24 23 22 26 26 O 1.35898 * 120.05129 * 179.75067 * 25 24 23 27 27 C 1.42895 * 117.00504 * 359.97438 * 26 25 24 28 28 C 1.38734 * 119.88947 * 359.72563 * 25 24 23 29 29 C 1.38145 * 119.94241 * 0.02562 * 28 25 24 30 30 H 1.09001 * 109.47220 * 305.39097 * 1 2 3 31 31 H 1.09001 * 109.46739 * 65.38844 * 1 2 3 32 32 H 1.08998 * 109.47117 * 185.38863 * 1 2 3 33 33 H 1.08994 * 109.47443 * 239.99519 * 2 1 3 34 34 H 1.08997 * 109.47066 * 119.99492 * 2 1 3 35 35 H 1.00898 * 110.99924 * 279.38352 * 5 3 2 36 36 H 1.08999 * 109.47241 * 65.25457 * 6 5 3 37 37 H 1.09009 * 109.47413 * 305.25924 * 6 5 3 38 38 H 0.96700 * 113.99718 * 299.99774 * 9 7 6 39 39 H 1.08995 * 109.47020 * 60.38871 * 10 7 6 40 40 H 1.09002 * 109.47039 * 300.38778 * 10 7 6 41 41 H 1.09001 * 109.47355 * 56.77221 * 12 11 10 42 42 H 1.09000 * 109.47120 * 176.77322 * 12 11 10 43 43 H 1.09002 * 109.47166 * 296.77314 * 12 11 10 44 44 H 1.09006 * 109.47312 * 310.00241 * 13 11 10 45 45 H 1.09004 * 109.47500 * 69.99630 * 13 11 10 46 46 H 0.97001 * 120.00699 * 180.02562 * 17 16 14 47 47 H 1.08000 * 119.97272 * 359.97438 * 23 22 3 48 48 H 1.07998 * 120.02503 * 180.26812 * 24 23 22 49 49 H 1.09007 * 109.47226 * 59.99836 * 27 26 25 50 50 H 1.09000 * 109.47657 * 180.02562 * 27 26 25 51 51 H 1.09005 * 109.46915 * 300.00406 * 27 26 25 52 52 H 1.07998 * 120.02731 * 179.97438 * 28 25 24 53 53 H 1.07999 * 119.97058 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9827 0.8394 5 7 1.6560 2.0976 -1.2576 6 6 1.5865 3.5555 -1.0919 7 6 1.0587 4.1907 -2.3799 8 1 0.0636 3.8016 -2.5957 9 8 1.9381 3.8755 -3.4614 10 6 0.9869 5.7092 -2.2075 11 7 0.4714 6.3182 -3.4409 12 6 0.8039 7.7478 -3.5010 13 6 -0.9772 6.1090 -3.5657 14 6 -1.4280 6.5244 -4.9424 15 1 -0.7101 6.9052 -5.6537 16 6 -2.7570 6.4182 -5.2939 17 7 -3.6312 5.9539 -4.4281 18 14 -3.3159 6.9337 -7.0002 19 1 -3.2365 5.7702 -7.9197 20 1 -4.7178 7.4192 -6.9363 21 1 -2.4377 8.0214 -7.5012 22 6 3.5415 1.4445 0.1293 23 6 4.3300 1.1960 -0.9790 24 6 5.7066 1.2029 -0.8642 25 6 6.2977 1.4481 0.3668 26 8 7.6516 1.4504 0.4833 27 6 8.4053 1.1921 -0.7030 28 6 5.5041 1.6916 1.4784 29 6 4.1280 1.6887 1.3573 30 1 -0.3634 0.5952 0.8378 31 1 -0.3633 0.4280 -0.9343 32 1 -0.3633 -1.0231 0.0965 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.2886 1.8482 -2.0031 36 1 2.5815 3.9445 -0.8761 37 1 0.9157 3.7959 -0.2669 38 1 2.8434 4.1921 -3.3372 39 1 1.9833 6.0987 -1.9989 40 1 0.3218 5.9497 -1.3781 41 1 1.8836 7.8735 -3.4192 42 1 0.4609 8.1611 -4.4495 43 1 0.3141 8.2697 -2.6789 44 1 -1.2068 5.0547 -3.4109 45 1 -1.4967 6.7076 -2.8174 46 1 -4.5661 5.8788 -4.6754 47 1 3.8693 1.0004 -1.9360 48 1 6.3221 1.0130 -1.7311 49 1 8.1746 1.9494 -1.4522 50 1 9.4699 1.2225 -0.4710 51 1 8.1463 0.2068 -1.0907 52 1 5.9619 1.8823 2.4378 53 1 3.5099 1.8786 2.2223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578328602.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:51 Heat of formation + Delta-G solvation = -86.107381 kcal Electronic energy + Delta-G solvation = -29447.307068 eV Core-core repulsion = 25511.066965 eV Total energy + Delta-G solvation = -3936.240103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.25089 -39.82302 -38.99520 -37.33623 -36.47782 -34.59330 -33.52782 -32.08842 -31.41094 -30.52285 -29.28277 -28.32928 -27.08656 -25.95350 -24.94562 -23.77148 -22.76334 -22.64690 -21.78477 -21.16518 -19.19085 -18.60707 -17.69152 -17.32639 -17.05994 -16.72964 -16.65101 -16.44500 -16.17211 -15.92945 -15.59366 -15.41870 -15.10426 -14.86680 -14.64072 -14.45594 -14.18188 -14.04895 -13.96161 -13.70809 -13.47840 -13.20880 -13.08651 -13.02223 -12.88122 -12.74485 -12.56070 -12.51279 -12.31170 -12.21601 -12.12848 -11.97375 -11.80591 -11.69651 -11.54478 -11.50236 -11.31602 -10.71858 -10.59346 -9.97900 -9.35356 -9.04692 -8.94239 -8.18970 -6.28350 0.36893 0.40592 1.40302 1.42858 1.53229 2.37693 2.41128 2.74768 2.97320 3.13547 3.47906 3.71374 3.75860 3.81850 3.94991 4.04192 4.15645 4.24570 4.30501 4.31448 4.36330 4.37462 4.42374 4.49563 4.52388 4.56549 4.61161 4.62686 4.71156 4.76088 4.78025 4.78421 4.84185 5.04847 5.05720 5.08131 5.15220 5.18022 5.28047 5.29021 5.32033 5.34421 5.38401 5.56481 5.58375 5.66141 5.79658 6.07475 6.15288 6.35816 6.43043 6.50150 6.65945 6.87331 7.05234 7.40734 8.92203 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.002327 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.624844 B =12032.031391 C =13049.231118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C 0.134 3.866 4 H 0.086 0.914 5 N -0.680 5.680 6 C 0.047 3.953 7 C 0.129 3.871 8 H 0.064 0.936 9 O -0.556 6.556 10 C 0.027 3.973 11 N -0.541 5.541 12 C 0.041 3.959 13 C 0.210 3.790 14 C -0.522 4.522 15 H 0.060 0.940 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.969 3.031 19 H -0.275 1.275 20 H -0.281 1.281 21 H -0.264 1.264 22 C -0.151 4.151 23 C -0.082 4.082 24 C -0.206 4.206 25 C 0.110 3.890 26 O -0.337 6.337 27 C 0.019 3.981 28 C -0.161 4.161 29 C -0.076 4.076 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.347 0.653 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.376 0.624 39 H 0.093 0.907 40 H 0.026 0.974 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.008 0.992 44 H 0.004 0.996 45 H -0.042 1.042 46 H 0.264 0.736 47 H 0.129 0.871 48 H 0.142 0.858 49 H 0.061 0.939 50 H 0.118 0.882 51 H 0.063 0.937 52 H 0.138 0.862 53 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.393 -11.391 12.858 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C 0.024 3.976 4 H 0.104 0.896 5 N -0.312 5.312 6 C -0.083 4.083 7 C 0.069 3.931 8 H 0.082 0.918 9 O -0.361 6.361 10 C -0.103 4.103 11 N -0.265 5.265 12 C -0.107 4.107 13 C 0.084 3.916 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.200 1.200 20 H -0.206 1.206 21 H -0.188 1.188 22 C -0.153 4.153 23 C -0.100 4.100 24 C -0.224 4.224 25 C 0.065 3.935 26 O -0.251 6.251 27 C -0.075 4.075 28 C -0.180 4.180 29 C -0.094 4.094 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.168 0.832 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.223 0.777 39 H 0.111 0.889 40 H 0.045 0.955 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.026 0.974 44 H 0.022 0.978 45 H -0.025 1.025 46 H 0.072 0.928 47 H 0.147 0.853 48 H 0.160 0.840 49 H 0.080 0.920 50 H 0.136 0.864 51 H 0.082 0.918 52 H 0.156 0.844 53 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 21.339 -11.983 12.484 27.473 hybrid contribution 0.211 1.093 -0.044 1.114 sum 21.550 -10.890 12.440 27.162 Atomic orbital electron populations 1.21631 0.95596 1.01031 1.01681 1.21449 0.95970 0.94338 1.01986 1.20604 0.88276 0.96136 0.92541 0.89633 1.60517 1.56717 1.07118 1.06871 1.22425 1.00048 0.88554 0.97293 1.21675 0.93427 0.91894 0.86146 0.91813 1.86648 1.23892 1.80833 1.44765 1.22786 1.00389 0.96150 0.90935 1.61939 1.15252 1.14013 1.35291 1.22223 1.00380 0.87887 1.00219 1.19370 0.82898 0.94296 0.95024 1.21465 0.93186 1.42119 0.99228 0.92144 1.25926 0.96803 0.95427 1.01705 1.70084 1.03026 1.47489 1.36894 0.85393 0.77393 0.78738 0.79150 1.20017 1.20631 1.18786 1.20677 0.97075 1.03415 0.94099 1.20875 0.92954 0.97444 0.98752 1.21386 0.96063 1.07817 0.97179 1.19260 0.82957 0.96809 0.94499 1.86036 1.15174 1.86495 1.37382 1.23311 0.96700 1.01339 0.86178 1.20644 0.93205 1.06074 0.98035 1.21061 0.93655 0.97136 0.97549 0.93121 0.93529 0.92608 0.92310 0.90822 0.83169 0.93606 0.90439 0.77695 0.88911 0.95540 0.90009 0.92697 0.97351 0.97818 1.02454 0.92750 0.85306 0.83984 0.92016 0.86368 0.91849 0.84444 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.74 71.98 0.70 -2.21 16 2 C -0.10 -1.81 5.58 30.59 0.17 -1.64 16 3 C 0.13 2.54 2.22 44.17 0.10 2.64 16 4 H 0.09 1.59 7.58 -2.39 -0.02 1.58 16 5 N -0.68 -15.79 5.76 -495.43 -2.85 -18.64 16 6 C 0.05 1.15 5.20 86.30 0.45 1.60 16 7 C 0.13 4.23 3.29 30.59 0.10 4.33 16 8 H 0.06 2.71 6.75 -2.39 -0.02 2.69 16 9 O -0.56 -18.05 12.65 -148.98 -1.88 -19.93 16 10 C 0.03 0.91 4.66 86.30 0.40 1.31 16 11 N -0.54 -23.75 4.56 -927.05 -4.23 -27.98 16 12 C 0.04 1.59 9.32 127.69 1.19 2.78 16 13 C 0.21 11.61 4.55 85.56 0.39 12.00 16 14 C -0.52 -30.68 8.50 25.60 0.22 -30.46 16 15 H 0.06 3.50 7.11 -2.91 -0.02 3.48 16 16 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 17 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 18 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 19 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 22 C -0.15 -2.69 4.76 -19.85 -0.09 -2.79 16 23 C -0.08 -1.45 9.11 22.25 0.20 -1.25 16 24 C -0.21 -3.49 9.04 22.37 0.20 -3.29 16 25 C 0.11 2.04 6.69 22.51 0.15 2.19 16 26 O -0.34 -5.93 10.50 -92.40 -0.97 -6.90 16 27 C 0.02 0.19 9.81 113.37 1.11 1.30 16 28 C -0.16 -2.83 9.99 22.37 0.22 -2.61 16 29 C -0.08 -1.25 9.66 22.25 0.22 -1.04 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.18 7.91 -2.39 -0.02 1.16 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.35 7.96 5.90 -89.70 -0.53 7.43 16 36 H 0.05 0.98 8.08 -2.39 -0.02 0.96 16 37 H 0.08 1.91 7.93 -2.38 -0.02 1.89 16 38 H 0.38 8.87 9.04 -74.06 -0.67 8.20 16 39 H 0.09 2.54 7.85 -2.39 -0.02 2.52 16 40 H 0.03 0.95 8.01 -2.39 -0.02 0.93 16 41 H 0.08 2.50 8.00 -2.39 -0.02 2.48 16 42 H 0.05 2.31 6.84 -2.39 -0.02 2.30 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.00 0.23 6.59 -2.38 -0.02 0.21 16 45 H -0.04 -2.52 8.12 -2.38 -0.02 -2.54 16 46 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 47 H 0.13 2.18 6.52 -2.91 -0.02 2.16 16 48 H 0.14 1.86 6.30 -2.91 -0.02 1.85 16 49 H 0.06 0.55 7.66 -2.38 -0.02 0.53 16 50 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.06 0.52 7.66 -2.38 -0.02 0.50 16 52 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 53 H 0.14 1.83 8.03 -2.91 -0.02 1.80 16 Total: -1.00 -71.64 422.29 -1.74 -73.37 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.31 Total: 26.66 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 6.19 Total: -16.73 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -6.79 Total: -104.14 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -2.85 Total: -26.84 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -71.64 -1.74 -73.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578328602.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.735 kcal (2) G-P(sol) polarization free energy of solvation -71.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds