Wall clock time and date at job start Tue Mar 31 2020 20:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47350 * 2 1 4 4 H 1.09001 * 109.47032 * 55.00216 * 3 2 1 5 5 C 1.53003 * 109.46839 * 175.00066 * 3 2 1 6 6 O 1.42896 * 109.46889 * 294.99859 * 3 2 1 7 7 C 1.36008 * 116.99785 * 150.56198 * 6 3 2 8 8 C 1.38697 * 119.97885 * 5.58273 * 7 6 3 9 9 C 1.38108 * 120.02103 * 179.97438 * 8 7 6 10 10 C 1.38866 * 119.97934 * 0.02562 * 9 8 7 11 11 N 1.39939 * 120.02025 * 180.02562 * 10 9 8 12 12 C 1.46497 * 120.00142 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47337 * 179.97438 * 12 11 10 14 14 H 1.09006 * 109.46819 * 304.99328 * 13 12 11 15 15 O 1.42892 * 109.47424 * 64.99263 * 13 12 11 16 16 C 1.53004 * 109.47200 * 184.99767 * 13 12 11 17 17 N 1.46898 * 109.47163 * 176.66973 * 16 13 12 18 18 C 1.46901 * 110.99912 * 163.27739 * 17 16 13 19 19 C 1.46902 * 110.99934 * 287.23414 * 17 16 13 20 20 C 1.50701 * 109.47145 * 169.99964 * 19 17 16 21 21 H 1.08005 * 120.00066 * 0.02562 * 20 19 17 22 22 C 1.37873 * 120.00241 * 179.97438 * 20 19 17 23 23 N 1.31512 * 120.00000 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00234 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47380 * 90.00093 * 24 22 20 26 26 H 1.48493 * 109.47389 * 210.00302 * 24 22 20 27 27 H 1.48509 * 109.47294 * 330.00351 * 24 22 20 28 28 C 1.38856 * 119.95896 * 0.27826 * 10 9 8 29 29 C 1.38115 * 119.98335 * 359.40582 * 28 10 9 30 30 H 1.08995 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46470 * 300.00029 * 1 2 3 32 32 H 1.09002 * 109.47076 * 59.99377 * 1 2 3 33 33 H 1.09010 * 109.46846 * 239.99936 * 2 1 3 34 34 H 1.09002 * 109.47076 * 120.00622 * 2 1 3 35 35 H 1.09000 * 109.47501 * 299.99938 * 5 3 2 36 36 H 1.09001 * 109.47186 * 60.00245 * 5 3 2 37 37 H 1.09004 * 109.46749 * 180.02562 * 5 3 2 38 38 H 1.08001 * 119.99506 * 0.02562 * 8 7 6 39 39 H 1.08006 * 120.01370 * 179.97438 * 9 8 7 40 40 H 0.97004 * 119.99775 * 359.97438 * 11 10 9 41 41 H 1.09005 * 109.46870 * 299.99611 * 12 11 10 42 42 H 1.09004 * 109.47287 * 59.99309 * 12 11 10 43 43 H 0.96706 * 114.00247 * 60.00125 * 15 13 12 44 44 H 1.09001 * 109.46658 * 296.66746 * 16 13 12 45 45 H 1.08997 * 109.46983 * 56.67129 * 16 13 12 46 46 H 1.09000 * 109.46982 * 65.87085 * 18 17 16 47 47 H 1.09004 * 109.46897 * 185.86399 * 18 17 16 48 48 H 1.08994 * 109.47298 * 305.86888 * 18 17 16 49 49 H 1.08999 * 109.47051 * 290.00046 * 19 17 16 50 50 H 1.09000 * 109.47412 * 49.99939 * 19 17 16 51 51 H 0.96999 * 120.00159 * 179.97438 * 23 22 20 52 52 H 1.08007 * 120.01140 * 179.69878 * 28 10 9 53 53 H 1.07996 * 119.99340 * 180.31451 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 8 1.6621 2.0813 -1.2210 7 6 1.4617 3.4258 -1.1781 8 6 1.7375 4.1309 -0.0160 9 6 1.5348 5.4963 0.0284 10 6 1.0542 6.1632 -1.0908 11 7 0.8491 7.5468 -1.0470 12 6 0.3416 8.2499 -2.2278 13 6 0.2086 9.7416 -1.9152 14 1 -0.4139 9.8733 -1.0301 15 8 1.5037 10.2949 -1.6732 16 6 -0.4374 10.4562 -3.1039 17 7 -0.6380 11.8734 -2.7732 18 6 -0.8770 12.6680 -3.9854 19 6 -1.7349 12.0391 -1.8103 20 6 -1.7532 13.4603 -1.3094 21 1 -1.0232 14.1697 -1.6706 22 6 -2.7023 13.8554 -0.3908 23 7 -3.5915 12.9919 0.0488 24 14 -2.7245 15.6169 0.2306 25 1 -3.5921 16.4411 -0.6487 26 1 -3.2551 15.6460 1.6172 27 1 -1.3440 16.1640 0.2173 28 6 0.7724 5.4556 -2.2518 29 6 0.9819 4.0911 -2.2966 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.8533 0.9568 1.0571 36 1 3.9995 0.9051 -0.7161 37 1 3.9283 2.4719 0.1262 38 1 2.1116 3.6122 0.8543 39 1 1.7492 6.0451 0.9336 40 1 1.0422 8.0402 -0.2344 41 1 1.0344 8.1126 -3.0580 42 1 -0.6345 7.8473 -2.4988 43 1 2.1122 10.2131 -2.4203 44 1 0.2137 10.3748 -3.9743 45 1 -1.3998 9.9951 -3.3256 46 1 -1.8229 12.3677 -4.4361 47 1 -0.9185 13.7255 -3.7243 48 1 -0.0669 12.5006 -4.6952 49 1 -2.6834 11.8134 -2.2976 50 1 -1.5871 11.3599 -0.9707 51 1 -4.2591 13.2697 0.6953 52 1 0.3940 5.9727 -3.1213 53 1 0.7676 3.5414 -3.2011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819425523.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:09 Heat of formation + Delta-G solvation = -87.683651 kcal Electronic energy + Delta-G solvation = -28528.691181 eV Core-core repulsion = 24592.382726 eV Total energy + Delta-G solvation = -3936.308456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.17423 -39.81853 -38.90215 -37.23197 -35.76954 -34.61663 -34.58172 -32.07533 -31.45833 -30.77759 -29.51508 -28.90530 -26.92880 -25.47801 -24.72222 -24.23971 -22.96347 -22.79196 -21.72081 -21.13120 -19.25228 -18.62528 -18.11169 -17.60984 -17.11603 -16.72494 -16.54792 -16.19439 -16.03858 -15.72678 -15.35514 -15.30404 -15.18388 -14.84228 -14.59018 -14.55593 -14.15591 -14.14594 -14.05339 -13.94181 -13.71252 -13.23263 -13.16096 -13.05637 -12.89788 -12.72940 -12.61394 -12.60583 -12.55611 -12.32755 -12.21093 -11.98315 -11.88063 -11.65439 -11.53833 -11.33607 -11.31986 -10.85354 -10.61387 -10.35966 -9.91550 -8.96137 -8.21363 -7.99042 -6.30588 0.43233 0.74365 1.39369 1.41049 1.52689 2.36901 2.39952 2.51354 2.94739 3.11112 3.27104 3.62448 3.76790 3.86702 3.92727 3.99802 4.04905 4.06551 4.14959 4.26745 4.34547 4.43577 4.44645 4.48716 4.58718 4.59537 4.62484 4.69943 4.70733 4.75888 4.78543 4.81702 5.00915 5.06664 5.07453 5.09317 5.10161 5.12356 5.21743 5.23194 5.29995 5.30981 5.38456 5.43184 5.51778 5.64288 5.77519 6.05800 6.33092 6.38713 6.63702 6.68083 6.83539 6.85458 7.01247 7.38865 8.89581 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020054 B = 0.001762 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.892313 B =15886.017158 C =16404.049539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C 0.072 3.928 4 H 0.074 0.926 5 C -0.174 4.174 6 O -0.325 6.325 7 C 0.059 3.941 8 C -0.160 4.160 9 C -0.168 4.168 10 C 0.175 3.825 11 N -0.744 5.744 12 C 0.109 3.891 13 C 0.115 3.885 14 H 0.068 0.932 15 O -0.557 6.557 16 C 0.027 3.973 17 N -0.542 5.542 18 C 0.041 3.959 19 C 0.208 3.792 20 C -0.523 4.523 21 H 0.061 0.939 22 C 0.000 4.000 23 N -0.934 5.934 24 Si 0.968 3.032 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.266 1.266 28 C -0.167 4.167 29 C -0.113 4.113 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.401 0.599 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.383 0.617 44 H 0.102 0.898 45 H 0.031 0.969 46 H 0.009 0.991 47 H 0.053 0.947 48 H 0.084 0.916 49 H -0.041 1.041 50 H 0.006 0.994 51 H 0.264 0.736 52 H 0.136 0.864 53 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.070 -24.937 -3.342 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C 0.017 3.983 4 H 0.092 0.908 5 C -0.231 4.231 6 O -0.240 6.240 7 C 0.013 3.987 8 C -0.179 4.179 9 C -0.191 4.191 10 C 0.073 3.927 11 N -0.375 5.375 12 C -0.017 4.017 13 C 0.055 3.945 14 H 0.086 0.914 15 O -0.363 6.363 16 C -0.102 4.102 17 N -0.266 5.266 18 C -0.107 4.107 19 C 0.082 3.918 20 C -0.561 4.561 21 H 0.079 0.921 22 C -0.198 4.198 23 N -0.575 5.575 24 Si 0.793 3.207 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.191 1.191 28 C -0.190 4.190 29 C -0.132 4.132 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.159 0.841 39 H 0.148 0.852 40 H 0.236 0.764 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.231 0.769 44 H 0.120 0.880 45 H 0.049 0.951 46 H 0.027 0.973 47 H 0.072 0.928 48 H 0.103 0.897 49 H -0.023 1.023 50 H 0.024 0.976 51 H 0.072 0.928 52 H 0.154 0.846 53 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.005 -24.699 -2.786 28.052 hybrid contribution -1.014 0.825 0.123 1.313 sum 11.992 -23.874 -2.662 26.849 Atomic orbital electron populations 1.21753 0.95661 1.02204 1.01525 1.21673 0.96351 0.93448 1.03921 1.22678 0.95633 0.94317 0.85718 0.90840 1.22315 0.94484 1.02687 1.03660 1.86076 1.84548 1.17618 1.35763 1.18859 1.01498 0.83261 0.95078 1.21143 1.04408 0.94271 0.98069 1.20596 1.05975 0.94410 0.98121 1.17955 0.96207 0.84076 0.94486 1.44571 1.73451 1.03911 1.15616 1.21893 0.99673 0.91114 0.88978 1.21842 0.84928 0.89863 0.97873 0.91365 1.86635 1.22816 1.83007 1.43869 1.22745 0.99898 0.89226 0.98323 1.61929 1.44402 1.07646 1.12612 1.22220 0.98850 0.98571 0.91055 1.19400 0.85920 0.96253 0.90229 1.21489 1.13822 0.96544 1.24258 0.92108 1.25910 0.95070 1.02248 0.96590 1.70078 1.18454 1.36546 1.32432 0.85401 0.78596 0.79248 0.77493 1.19681 1.20789 1.19077 1.20620 1.06899 0.93597 0.97896 1.20345 1.01497 0.93559 0.97793 0.91410 0.92895 0.93740 0.91046 0.88176 0.89228 0.91771 0.92784 0.84087 0.85246 0.76443 0.89938 0.91652 0.76871 0.87959 0.95061 0.97291 0.92777 0.89737 1.02319 0.97621 0.92760 0.84574 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.81 71.98 0.71 -1.29 16 2 C -0.12 -1.32 5.64 30.59 0.17 -1.15 16 3 C 0.07 1.05 2.20 30.60 0.07 1.12 16 4 H 0.07 1.04 6.02 -2.39 -0.01 1.03 16 5 C -0.17 -2.08 9.30 71.98 0.67 -1.41 16 6 O -0.32 -6.70 9.32 -93.64 -0.87 -7.58 16 7 C 0.06 1.31 6.64 22.49 0.15 1.46 16 8 C -0.16 -3.33 8.47 22.35 0.19 -3.14 16 9 C -0.17 -3.80 9.89 22.39 0.22 -3.57 16 10 C 0.18 4.21 6.66 38.15 0.25 4.46 16 11 N -0.74 -18.16 5.69 -339.27 -1.93 -20.09 16 12 C 0.11 2.52 4.55 86.38 0.39 2.91 16 13 C 0.12 3.49 3.05 30.59 0.09 3.58 16 14 H 0.07 2.65 6.54 -2.38 -0.02 2.64 16 15 O -0.56 -16.98 13.21 -148.98 -1.97 -18.95 16 16 C 0.03 0.86 4.63 86.30 0.40 1.26 16 17 N -0.54 -22.68 4.63 -927.04 -4.29 -26.97 16 18 C 0.04 1.52 9.32 127.69 1.19 2.71 16 19 C 0.21 11.10 4.57 85.56 0.39 11.49 16 20 C -0.52 -30.09 8.54 25.60 0.22 -29.87 16 21 H 0.06 3.45 7.10 -2.91 -0.02 3.43 16 22 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 23 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 24 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 C -0.17 -3.75 9.31 22.39 0.21 -3.55 16 29 C -0.11 -2.49 9.98 22.35 0.22 -2.26 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.04 0.73 7.82 -2.39 -0.02 0.71 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.05 0.75 7.42 -2.39 -0.02 0.73 16 38 H 0.14 2.35 5.60 -2.91 -0.02 2.34 16 39 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 40 H 0.40 10.27 8.49 -92.71 -0.79 9.48 16 41 H 0.08 1.54 7.96 -2.38 -0.02 1.52 16 42 H 0.07 1.52 7.94 -2.39 -0.02 1.50 16 43 H 0.38 8.26 9.05 -74.05 -0.67 7.59 16 44 H 0.10 2.46 7.86 -2.39 -0.02 2.44 16 45 H 0.03 1.02 8.04 -2.39 -0.02 1.00 16 46 H 0.01 0.32 8.13 -2.39 -0.02 0.30 16 47 H 0.05 2.19 6.91 -2.39 -0.02 2.17 16 48 H 0.08 2.41 7.95 -2.39 -0.02 2.39 16 49 H -0.04 -2.36 8.11 -2.39 -0.02 -2.38 16 50 H 0.01 0.33 6.40 -2.39 -0.02 0.32 16 51 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 52 H 0.14 2.65 6.73 -2.91 -0.02 2.63 16 53 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -69.86 422.33 -1.30 -71.15 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.56 Total: 28.80 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 6.01 Total: -16.82 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -5.93 Total: -103.62 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -2.84 Total: -26.52 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.86 -1.30 -71.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819425523.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.529 kcal (2) G-P(sol) polarization free energy of solvation -69.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds