Wall clock time and date at job start Tue Mar 31 2020 19:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47547 * 2 1 4 4 H 1.09006 * 109.46531 * 305.73660 * 3 2 1 5 5 N 1.46902 * 109.47135 * 65.72704 * 3 2 1 6 6 C 1.46899 * 110.99996 * 206.51252 * 5 3 2 7 7 C 1.53001 * 109.47049 * 185.39936 * 6 5 3 8 8 H 1.09005 * 109.46811 * 60.00407 * 7 6 5 9 9 O 1.42897 * 109.47381 * 300.00438 * 7 6 5 10 10 C 1.52997 * 109.47010 * 179.97438 * 7 6 5 11 11 N 1.46905 * 109.47227 * 185.00040 * 10 7 6 12 12 C 1.46897 * 110.99547 * 66.04805 * 11 10 7 13 13 C 1.46894 * 111.00084 * 190.00142 * 11 10 7 14 14 C 1.50706 * 109.46916 * 170.00173 * 13 11 10 15 15 H 1.07994 * 119.99837 * 359.97438 * 14 13 11 16 16 C 1.37879 * 119.99926 * 180.02562 * 14 13 11 17 17 N 1.31510 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99951 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46742 * 60.00206 * 18 16 14 20 20 H 1.48503 * 109.47028 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47323 * 300.00155 * 18 16 14 22 22 C 1.50694 * 109.47372 * 185.73490 * 3 2 1 23 23 C 1.38169 * 120.02452 * 264.99862 * 22 3 2 24 24 C 1.38247 * 120.05409 * 179.97438 * 23 22 3 25 25 C 1.38291 * 120.11071 * 0.02562 * 24 23 22 26 26 C 1.38123 * 120.05511 * 0.02562 * 25 24 23 27 27 C 1.38713 * 120.03050 * 84.72154 * 22 3 2 28 28 O 1.35899 * 120.05487 * 359.97438 * 27 22 3 29 29 C 1.42900 * 117.00076 * 179.97438 * 28 27 22 30 30 H 1.08995 * 109.47181 * 174.25911 * 1 2 3 31 31 H 1.09002 * 109.47568 * 294.25961 * 1 2 3 32 32 H 1.09002 * 109.46703 * 54.25778 * 1 2 3 33 33 H 1.08998 * 109.47410 * 239.99441 * 2 1 3 34 34 H 1.09008 * 109.46975 * 119.99442 * 2 1 3 35 35 H 1.00896 * 111.00293 * 330.47626 * 5 3 2 36 36 H 1.08996 * 109.46745 * 65.40378 * 6 5 3 37 37 H 1.08996 * 109.47159 * 305.40524 * 6 5 3 38 38 H 0.96697 * 113.99880 * 299.99651 * 9 7 6 39 39 H 1.09000 * 109.46878 * 65.00949 * 10 7 6 40 40 H 1.08994 * 109.47675 * 305.00662 * 10 7 6 41 41 H 1.09000 * 109.47282 * 183.95272 * 12 11 10 42 42 H 1.08997 * 109.47237 * 63.95769 * 12 11 10 43 43 H 1.09004 * 109.47789 * 303.95148 * 12 11 10 44 44 H 1.08997 * 109.47658 * 289.99865 * 13 11 10 45 45 H 1.09003 * 109.47357 * 50.00625 * 13 11 10 46 46 H 0.97008 * 120.00233 * 180.02562 * 17 16 14 47 47 H 1.07994 * 119.97256 * 359.97282 * 23 22 3 48 48 H 1.07999 * 119.94278 * 179.97438 * 24 23 22 49 49 H 1.07998 * 119.97167 * 180.02562 * 25 24 23 50 50 H 1.07998 * 120.02577 * 179.97438 * 26 25 24 51 51 H 1.08999 * 109.46722 * 180.02562 * 29 28 27 52 52 H 1.08999 * 109.47213 * 300.00845 * 29 28 27 53 53 H 1.09005 * 109.46490 * 60.00594 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5953 1.9850 -0.8342 5 7 1.6666 2.0939 1.2626 6 6 1.5509 3.5482 1.0905 7 6 1.2942 4.2037 2.4489 8 1 2.1230 3.9823 3.1215 9 8 0.0809 3.6916 3.0034 10 6 1.1744 5.7184 2.2697 11 7 1.0478 6.3587 3.5858 12 6 2.2786 6.1960 4.3709 13 6 0.6944 7.7779 3.4490 14 6 0.3341 8.3385 4.8007 15 1 0.3643 7.7038 5.6739 16 6 -0.0350 9.6614 4.9224 17 7 -0.0731 10.4339 3.8587 18 14 -0.4822 10.3560 6.5977 19 1 0.6778 10.2214 7.5150 20 1 -0.8394 11.7908 6.4594 21 1 -1.6399 9.6082 7.1507 22 6 3.5403 1.4448 -0.1420 23 6 4.3410 1.5104 0.9821 24 6 5.7174 1.5120 0.8526 25 6 6.2963 1.4486 -0.4017 26 6 5.5002 1.3839 -1.5285 27 6 4.1186 1.3753 -1.4009 28 8 3.3332 1.3045 -2.5077 29 6 3.9973 1.2359 -3.7711 30 1 -0.3633 -1.0225 -0.1028 31 1 -0.3634 0.4222 0.9369 32 1 -0.3633 0.6003 -0.8341 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.8122 1.7043 1.6316 36 1 0.7222 3.7696 0.4179 37 1 2.4764 3.9388 0.6675 38 1 -0.7002 3.8530 2.4567 39 1 0.2931 5.9446 1.6695 40 1 2.0639 6.0963 1.7659 41 1 2.1336 6.6175 5.3656 42 1 3.0983 6.7139 3.8730 43 1 2.5174 5.1359 4.4569 44 1 1.5442 8.3266 3.0430 45 1 -0.1573 7.8771 2.7759 46 1 -0.3325 11.3647 3.9443 47 1 3.8913 1.5604 1.9627 48 1 6.3416 1.5638 1.7325 49 1 7.3718 1.4496 -0.5002 50 1 5.9528 1.3348 -2.5079 51 1 3.2562 1.1840 -4.5687 52 1 4.6142 2.1243 -3.9060 53 1 4.6280 0.3474 -3.8023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840745233.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:03 Heat of formation + Delta-G solvation = -83.838026 kcal Electronic energy + Delta-G solvation = -29677.756401 eV Core-core repulsion = 25741.614705 eV Total energy + Delta-G solvation = -3936.141697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28768 -39.68688 -38.57865 -37.66207 -36.77749 -34.62200 -33.48407 -32.05278 -30.95466 -30.74183 -29.00179 -28.16980 -27.54580 -26.42442 -24.84288 -23.24912 -22.92197 -22.53818 -21.86273 -21.13793 -18.91657 -18.57050 -17.60049 -17.43039 -17.07613 -16.78024 -16.64477 -16.55727 -16.14525 -15.91151 -15.68736 -15.43317 -15.27503 -14.96067 -14.58038 -14.48650 -14.17094 -13.96549 -13.80642 -13.71837 -13.55781 -13.21930 -13.04983 -12.96144 -12.74651 -12.60628 -12.55687 -12.52636 -12.39894 -12.23042 -12.12806 -12.00012 -11.95783 -11.74280 -11.63642 -11.49128 -11.38656 -10.70538 -10.61525 -9.70878 -9.38842 -9.04435 -8.97033 -8.20728 -6.30806 0.45159 0.55034 1.40987 1.44568 1.52469 2.40323 2.42460 2.85012 2.91764 3.11618 3.41731 3.68597 3.78258 3.98863 4.04846 4.07622 4.13328 4.18547 4.22212 4.28569 4.33656 4.38581 4.40921 4.42867 4.54017 4.55073 4.62600 4.67809 4.71864 4.73138 4.75595 4.79435 4.88586 4.92152 5.05843 5.10713 5.14839 5.16191 5.17753 5.23802 5.32057 5.37181 5.43269 5.55735 5.64657 5.69810 5.94274 6.03854 6.10992 6.31903 6.47460 6.53848 6.63055 6.84998 6.97199 7.38876 8.90215 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.002241 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.207100 B =12491.376516 C =13021.519583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C 0.142 3.858 4 H 0.044 0.956 5 N -0.675 5.675 6 C 0.044 3.956 7 C 0.134 3.866 8 H 0.096 0.904 9 O -0.557 6.557 10 C 0.025 3.975 11 N -0.538 5.538 12 C 0.041 3.959 13 C 0.208 3.792 14 C -0.524 4.524 15 H 0.062 0.938 16 C 0.000 4.000 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.124 4.124 23 C -0.064 4.064 24 C -0.172 4.172 25 C -0.089 4.089 26 C -0.218 4.218 27 C 0.113 3.887 28 O -0.333 6.333 29 C 0.020 3.980 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.354 0.646 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.378 0.622 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.055 0.945 42 H 0.008 0.992 43 H 0.078 0.922 44 H -0.041 1.041 45 H 0.003 0.997 46 H 0.265 0.735 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.143 0.857 50 H 0.144 0.856 51 H 0.115 0.885 52 H 0.059 0.941 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.564 -24.367 -14.737 30.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C 0.033 3.967 4 H 0.062 0.938 5 N -0.309 5.309 6 C -0.087 4.087 7 C 0.074 3.926 8 H 0.114 0.886 9 O -0.362 6.362 10 C -0.105 4.105 11 N -0.262 5.262 12 C -0.107 4.107 13 C 0.081 3.919 14 C -0.562 4.562 15 H 0.080 0.920 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.125 4.125 23 C -0.082 4.082 24 C -0.190 4.190 25 C -0.107 4.107 26 C -0.237 4.237 27 C 0.067 3.933 28 O -0.246 6.246 29 C -0.075 4.075 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.176 0.824 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.226 0.774 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.096 0.904 44 H -0.023 1.023 45 H 0.021 0.979 46 H 0.073 0.927 47 H 0.154 0.846 48 H 0.153 0.847 49 H 0.161 0.839 50 H 0.162 0.838 51 H 0.133 0.867 52 H 0.077 0.923 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.957 -24.593 -13.857 29.933 hybrid contribution -0.407 1.682 -1.067 2.033 sum 9.551 -22.911 -14.924 28.963 Atomic orbital electron populations 1.21812 0.94733 1.02626 1.01826 1.21580 0.96360 0.94462 1.02534 1.20125 0.90713 0.95311 0.90574 0.93775 1.60237 1.40938 1.02670 1.27094 1.22442 1.00895 0.89124 0.96209 1.21725 0.87950 0.88806 0.94077 0.88592 1.86571 1.17334 1.80581 1.51740 1.22823 1.00200 0.96313 0.91138 1.61954 1.33647 1.15403 1.15157 1.22226 0.89457 1.00718 0.98325 1.19397 0.92955 0.83232 0.96273 1.21439 1.45096 0.95203 0.94443 0.92017 1.25929 0.95441 0.97326 1.01036 1.70078 1.49479 1.07071 1.30998 0.85426 0.79054 0.77013 0.79076 1.19230 1.20735 1.19297 1.19384 0.96144 1.06623 0.90374 1.21075 0.93033 0.95401 0.98697 1.21393 0.95100 1.04137 0.98342 1.21241 1.00690 0.96986 0.91823 1.21426 0.92071 1.09289 1.00895 1.19048 0.90064 0.97470 0.86716 1.86045 1.35924 1.88477 1.14199 1.23282 0.99849 1.01953 0.82370 0.91341 0.92244 0.92996 0.91547 0.91238 0.82409 0.94354 0.91248 0.77398 0.91512 0.95408 0.92577 0.97375 0.90364 1.02297 0.97862 0.92665 0.84560 0.84724 0.83886 0.83840 0.86722 0.92267 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.65 71.98 0.69 -1.55 16 2 C -0.11 -1.93 5.49 30.59 0.17 -1.76 16 3 C 0.14 2.91 1.96 44.17 0.09 2.99 16 4 H 0.04 1.01 7.39 -2.38 -0.02 0.99 16 5 N -0.68 -14.19 5.01 -495.46 -2.48 -16.68 16 6 C 0.04 1.03 5.15 86.30 0.44 1.47 16 7 C 0.13 3.81 3.20 30.59 0.10 3.91 16 8 H 0.10 2.90 6.26 -2.38 -0.01 2.88 16 9 O -0.56 -16.18 12.73 -148.98 -1.90 -18.08 16 10 C 0.02 0.87 4.60 86.30 0.40 1.27 16 11 N -0.54 -23.99 4.70 -927.06 -4.36 -28.35 16 12 C 0.04 1.66 9.17 127.69 1.17 2.83 16 13 C 0.21 11.42 4.72 85.56 0.40 11.82 16 14 C -0.52 -30.54 8.51 25.60 0.22 -30.32 16 15 H 0.06 3.55 7.10 -2.91 -0.02 3.53 16 16 C 0.00 0.03 5.46 84.66 0.46 0.49 16 17 N -0.94 -57.29 13.29 21.45 0.28 -57.01 16 18 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 C -0.12 -2.72 4.84 -19.77 -0.10 -2.82 16 23 C -0.06 -1.38 9.32 22.26 0.21 -1.18 16 24 C -0.17 -3.26 10.04 22.28 0.22 -3.04 16 25 C -0.09 -1.52 10.04 22.26 0.22 -1.30 16 26 C -0.22 -3.85 9.04 22.36 0.20 -3.64 16 27 C 0.11 2.34 6.66 22.51 0.15 2.49 16 28 O -0.33 -6.41 9.64 -92.41 -0.89 -7.30 16 29 C 0.02 0.22 9.81 113.37 1.11 1.33 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.87 6.66 -2.39 -0.02 0.85 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.35 7.10 6.13 -89.70 -0.55 6.55 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 1.77 7.97 -2.39 -0.02 1.75 16 38 H 0.38 8.83 9.05 -74.06 -0.67 8.16 16 39 H 0.07 2.37 7.93 -2.39 -0.02 2.35 16 40 H 0.03 1.00 8.12 -2.39 -0.02 0.98 16 41 H 0.06 2.44 6.86 -2.39 -0.02 2.42 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 43 H 0.08 2.68 6.21 -2.39 -0.01 2.66 16 44 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 45 H 0.00 0.19 7.93 -2.39 -0.02 0.17 16 46 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 47 H 0.14 3.04 7.26 -2.91 -0.02 3.02 16 48 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 49 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 50 H 0.14 1.82 6.30 -2.91 -0.02 1.80 16 51 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.06 0.59 7.65 -2.39 -0.02 0.57 16 53 H 0.07 0.56 7.67 -2.38 -0.02 0.54 16 Total: -1.00 -69.50 419.92 -1.48 -70.98 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.32 Total: 26.27 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 6.17 Total: -16.99 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -6.56 Total: -102.04 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -2.79 Total: -25.37 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.50 -1.48 -70.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840745233.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.863 kcal (2) G-P(sol) polarization free energy of solvation -69.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds