Wall clock time and date at job start Tue Mar 31 2020 20:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47588 * 2 1 4 4 H 1.09005 * 109.47189 * 56.42903 * 3 2 1 5 5 N 1.46901 * 109.47178 * 296.43166 * 3 2 1 6 6 C 1.46899 * 111.00244 * 153.71197 * 5 3 2 7 7 C 1.53003 * 109.47323 * 176.82191 * 6 5 3 8 8 H 1.09006 * 109.46918 * 304.99860 * 7 6 5 9 9 O 1.42890 * 109.47219 * 65.00076 * 7 6 5 10 10 C 1.52999 * 109.47175 * 185.00527 * 7 6 5 11 11 N 1.46894 * 109.47233 * 175.12966 * 10 7 6 12 12 C 1.46898 * 111.00450 * 164.23831 * 11 10 7 13 13 C 1.46905 * 110.99999 * 288.19270 * 11 10 7 14 14 C 1.50700 * 109.47087 * 169.99982 * 13 11 10 15 15 H 1.08000 * 120.00254 * 359.97438 * 14 13 11 16 16 C 1.37876 * 119.99647 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00361 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99919 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47113 * 60.00094 * 18 16 14 20 20 H 1.48501 * 109.47332 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47232 * 300.00281 * 18 16 14 22 22 C 1.52996 * 109.47333 * 176.43106 * 3 2 1 23 23 H 1.09003 * 109.46874 * 174.99831 * 22 3 2 24 24 O 1.42896 * 109.47116 * 55.00004 * 22 3 2 25 25 C 1.50700 * 109.47096 * 295.00006 * 22 3 2 26 26 C 1.38230 * 119.99832 * 84.72813 * 25 22 3 27 27 C 1.38237 * 119.99827 * 179.81052 * 26 25 22 28 28 C 1.38230 * 120.00066 * 0.39537 * 27 26 25 29 29 C 1.38242 * 120.00005 * 359.85622 * 28 27 26 30 30 C 1.38230 * 119.99741 * 359.95668 * 29 28 27 31 31 H 1.09001 * 109.47108 * 305.15579 * 1 2 3 32 32 H 1.09002 * 109.47070 * 65.15511 * 1 2 3 33 33 H 1.09001 * 109.47588 * 185.15516 * 1 2 3 34 34 H 1.09005 * 109.47081 * 239.99709 * 2 1 3 35 35 H 1.08995 * 109.47138 * 120.00188 * 2 1 3 36 36 H 1.00898 * 111.00428 * 277.67227 * 5 3 2 37 37 H 1.09005 * 109.46837 * 56.82626 * 6 5 3 38 38 H 1.08997 * 109.47200 * 296.82232 * 6 5 3 39 39 H 0.96705 * 114.00114 * 59.99794 * 9 7 6 40 40 H 1.08998 * 109.47291 * 55.12702 * 10 7 6 41 41 H 1.09000 * 109.47000 * 295.13242 * 10 7 6 42 42 H 1.08994 * 109.47690 * 180.53125 * 12 11 10 43 43 H 1.08999 * 109.46832 * 60.52649 * 12 11 10 44 44 H 1.09004 * 109.46746 * 300.53378 * 12 11 10 45 45 H 1.08995 * 109.46875 * 289.99961 * 13 11 10 46 46 H 1.08995 * 109.47155 * 49.99816 * 13 11 10 47 47 H 0.96996 * 120.00257 * 179.97438 * 17 16 14 48 48 H 0.96697 * 114.00322 * 300.00152 * 24 22 3 49 49 H 1.08001 * 120.00517 * 359.97438 * 26 25 22 50 50 H 1.08005 * 119.99706 * 180.22820 * 27 26 25 51 51 H 1.07998 * 120.00273 * 179.83396 * 28 27 26 52 52 H 1.07993 * 120.00010 * 179.97438 * 29 28 27 53 53 H 1.08003 * 119.99747 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6254 1.9744 0.8563 5 7 1.6221 2.1096 -1.2402 6 6 1.5180 3.5622 -1.0473 7 6 1.1587 4.2288 -2.3768 8 1 1.8871 3.9422 -3.1355 9 8 -0.1444 3.8073 -2.7842 10 6 1.1727 5.7491 -2.2052 11 7 0.9428 6.3909 -3.5064 12 6 0.5790 7.8042 -3.3394 13 6 2.1166 6.2488 -4.3782 14 6 1.7631 6.6954 -5.7734 15 1 0.7660 7.0489 -5.9909 16 6 2.7126 6.6526 -6.7722 17 7 3.9265 6.2217 -6.5075 18 14 2.2742 7.2055 -8.5019 19 1 1.8470 8.6274 -8.4737 20 1 3.4608 7.0621 -9.3831 21 1 1.1661 6.3660 -9.0240 22 6 3.5674 1.4433 0.0898 23 1 3.9360 2.4652 0.0004 24 8 4.1071 0.6480 -0.9677 25 6 3.9929 0.8699 1.4169 26 6 4.1114 -0.4985 1.5726 27 6 4.5055 -1.0242 2.7888 28 6 4.7731 -0.1819 3.8517 29 6 4.6496 1.1863 3.6976 30 6 4.2592 1.7122 2.4802 31 1 -0.3633 0.5917 0.8402 32 1 -0.3633 0.4318 -0.9326 33 1 -0.3634 -1.0235 0.0923 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.2502 1.8896 -1.9986 37 1 2.4726 3.9508 -0.6923 38 1 0.7424 3.7764 -0.3122 39 1 -0.8443 4.0298 -2.1550 40 1 2.1400 6.0615 -1.8118 41 1 0.3858 6.0435 -1.5107 42 1 0.4052 8.2528 -4.3175 43 1 1.3901 8.3312 -2.8369 44 1 -0.3283 7.8775 -2.7397 45 1 2.9304 6.8644 -3.9949 46 1 2.4295 5.2050 -4.3991 47 1 4.5944 6.1912 -7.2103 48 1 3.8209 -0.2754 -0.9509 49 1 3.8986 -1.1568 0.7432 50 1 4.6016 -2.0932 2.9093 51 1 5.0784 -0.5928 4.8027 52 1 4.8583 1.8443 4.5281 53 1 4.1631 2.7811 2.3597 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872249786.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:50 Heat of formation + Delta-G solvation = -100.998135 kcal Electronic energy + Delta-G solvation = -29742.487338 eV Core-core repulsion = 25805.601523 eV Total energy + Delta-G solvation = -3936.885815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.11250 -39.56327 -38.64846 -37.15906 -35.97327 -34.60687 -33.60822 -32.48413 -31.74751 -30.84244 -29.36146 -28.39511 -26.66077 -25.42140 -24.68610 -23.45814 -22.89335 -22.42893 -21.77990 -21.10741 -18.70526 -18.59709 -17.77513 -17.21735 -16.93056 -16.61000 -16.49035 -16.46761 -16.21596 -15.99187 -15.50512 -15.29945 -15.05803 -14.87926 -14.66756 -14.41621 -14.19401 -13.96469 -13.77981 -13.70758 -13.44652 -13.23275 -13.03698 -12.89540 -12.82211 -12.59871 -12.57134 -12.53686 -12.32864 -12.16497 -12.13875 -11.91365 -11.71616 -11.66342 -11.50392 -11.32697 -11.26905 -10.65695 -10.60187 -9.87100 -9.81097 -9.14222 -8.95740 -8.20571 -6.30185 0.37528 0.46623 1.39347 1.43614 1.51177 2.40102 2.78156 2.94084 3.11833 3.36351 3.49833 3.61233 3.72906 3.73576 3.90190 3.98253 4.07330 4.13632 4.22191 4.24169 4.27671 4.36517 4.40284 4.50382 4.56705 4.59266 4.60818 4.65814 4.72796 4.76479 4.76683 4.80340 5.02427 5.05280 5.07169 5.11476 5.13346 5.18246 5.24602 5.29467 5.31664 5.53140 5.58237 5.60095 5.61261 5.64241 6.03447 6.06662 6.08680 6.32017 6.35434 6.64118 6.64917 6.85356 7.13918 7.39057 8.90418 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.002309 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.206780 B =12125.324487 C =12445.762691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C 0.071 3.929 4 H 0.087 0.913 5 N -0.668 5.668 6 C 0.041 3.959 7 C 0.127 3.873 8 H 0.057 0.943 9 O -0.551 6.551 10 C 0.027 3.973 11 N -0.543 5.543 12 C 0.040 3.960 13 C 0.209 3.791 14 C -0.523 4.523 15 H 0.061 0.939 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.270 1.270 22 C 0.119 3.881 23 H 0.088 0.912 24 O -0.566 6.566 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.123 4.123 28 C -0.127 4.127 29 C -0.125 4.125 30 C -0.129 4.129 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.340 0.660 37 H 0.034 0.966 38 H 0.095 0.905 39 H 0.378 0.622 40 H 0.024 0.976 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.009 0.991 44 H 0.083 0.917 45 H -0.043 1.043 46 H 0.004 0.996 47 H 0.264 0.736 48 H 0.384 0.616 49 H 0.134 0.866 50 H 0.143 0.857 51 H 0.142 0.858 52 H 0.138 0.862 53 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 -14.366 24.222 28.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 C -0.039 4.039 4 H 0.105 0.895 5 N -0.298 5.298 6 C -0.089 4.089 7 C 0.066 3.934 8 H 0.075 0.925 9 O -0.357 6.357 10 C -0.102 4.102 11 N -0.267 5.267 12 C -0.108 4.108 13 C 0.083 3.917 14 C -0.562 4.562 15 H 0.079 0.921 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.195 1.195 22 C 0.058 3.942 23 H 0.105 0.895 24 O -0.375 6.375 25 C -0.120 4.120 26 C -0.137 4.137 27 C -0.141 4.141 28 C -0.145 4.145 29 C -0.143 4.143 30 C -0.147 4.147 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.159 0.841 37 H 0.052 0.948 38 H 0.113 0.887 39 H 0.226 0.774 40 H 0.042 0.958 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.027 0.973 44 H 0.101 0.899 45 H -0.025 1.025 46 H 0.022 0.978 47 H 0.073 0.927 48 H 0.235 0.765 49 H 0.151 0.849 50 H 0.161 0.839 51 H 0.160 0.840 52 H 0.156 0.844 53 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.937 -14.398 23.335 27.576 hybrid contribution 1.527 0.914 -0.042 1.781 sum -1.410 -13.483 23.293 26.951 Atomic orbital electron populations 1.21542 0.94921 1.01029 1.01792 1.21576 0.97257 0.94316 1.02083 1.22261 0.91449 0.97191 0.93042 0.89531 1.60603 1.55117 1.07636 1.06492 1.22590 1.00731 0.88448 0.97162 1.21636 0.85586 0.91232 0.94898 0.92501 1.86644 1.16310 1.82232 1.50479 1.22801 1.00222 0.95592 0.91565 1.61950 1.37882 1.14888 1.11969 1.22226 0.99235 0.88068 1.01248 1.19375 0.86150 0.94306 0.91856 1.21447 0.97441 1.42580 0.94699 0.92065 1.25934 0.94743 0.95497 1.03665 1.70079 1.04341 1.48265 1.34890 0.85442 0.77648 0.79135 0.78438 1.19014 1.20747 1.19486 1.21523 0.94514 0.94436 0.83728 0.89465 1.86643 1.73907 1.26211 1.50691 1.20481 1.00802 0.94896 0.95852 1.21101 0.99855 0.94155 0.98557 1.21446 0.98756 1.01086 0.92795 1.21511 0.99584 0.93553 0.99886 1.21412 0.99259 0.96167 0.97461 1.21180 1.00103 0.99986 0.93440 0.93319 0.92980 0.92581 0.91729 0.90266 0.84099 0.94798 0.88696 0.77412 0.95769 0.88361 0.92668 0.97265 0.89876 1.02545 0.97791 0.92734 0.76529 0.84864 0.83882 0.83991 0.84379 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.72 71.98 0.70 -1.62 16 2 C -0.11 -1.83 4.55 30.59 0.14 -1.69 16 3 C 0.07 1.33 1.89 44.91 0.08 1.42 16 4 H 0.09 1.59 7.82 -2.38 -0.02 1.57 16 5 N -0.67 -16.05 5.71 -491.57 -2.81 -18.86 16 6 C 0.04 1.01 5.11 86.30 0.44 1.45 16 7 C 0.13 4.23 3.17 30.60 0.10 4.33 16 8 H 0.06 2.44 6.43 -2.38 -0.02 2.42 16 9 O -0.55 -18.76 13.23 -148.98 -1.97 -20.74 16 10 C 0.03 0.94 4.61 86.30 0.40 1.34 16 11 N -0.54 -24.00 4.66 -927.08 -4.32 -28.32 16 12 C 0.04 1.57 9.35 127.69 1.19 2.76 16 13 C 0.21 11.61 4.57 85.56 0.39 12.00 16 14 C -0.52 -30.94 8.47 25.60 0.22 -30.72 16 15 H 0.06 3.56 7.12 -2.91 -0.02 3.53 16 16 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 17 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16 18 Si 0.97 45.87 29.54 68.60 2.03 47.89 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 22 C 0.12 2.39 3.08 29.85 0.09 2.49 16 23 H 0.09 2.04 7.32 -2.39 -0.02 2.03 16 24 O -0.57 -12.69 12.40 -148.98 -1.85 -14.54 16 25 C -0.12 -2.13 4.73 -19.87 -0.09 -2.22 16 26 C -0.12 -1.77 7.35 22.27 0.16 -1.61 16 27 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 28 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 29 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 30 C -0.13 -2.22 9.68 22.27 0.22 -2.00 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 1.11 7.86 -2.39 -0.02 1.10 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.03 6.92 -2.38 -0.02 1.01 16 35 H 0.08 1.08 5.63 -2.39 -0.01 1.07 16 36 H 0.34 9.65 7.87 -89.70 -0.71 8.94 16 37 H 0.03 0.84 7.40 -2.38 -0.02 0.82 16 38 H 0.09 1.91 8.12 -2.39 -0.02 1.89 16 39 H 0.38 9.38 9.05 -74.05 -0.67 8.71 16 40 H 0.02 0.86 8.05 -2.39 -0.02 0.84 16 41 H 0.10 2.64 7.95 -2.39 -0.02 2.62 16 42 H 0.05 2.34 6.77 -2.39 -0.02 2.32 16 43 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.08 2.55 8.08 -2.38 -0.02 2.53 16 45 H -0.04 -2.58 8.12 -2.39 -0.02 -2.60 16 46 H 0.00 0.25 6.32 -2.39 -0.02 0.23 16 47 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 48 H 0.38 6.07 5.63 -74.06 -0.42 5.66 16 49 H 0.13 1.53 6.11 -2.91 -0.02 1.51 16 50 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 51 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 52 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 53 H 0.12 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -73.01 415.56 -4.34 -77.35 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.88 Total: 33.16 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 5.17 Total: -18.03 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -6.84 Total: -105.09 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -3.82 Total: -35.28 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -73.01 -4.34 -77.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872249786.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.653 kcal (2) G-P(sol) polarization free energy of solvation -73.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds