Wall clock time and date at job start Tue Mar 31 2020 19:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47216 * 2 1 4 4 H 1.08998 * 109.48768 * 305.03084 * 3 2 1 5 5 O 1.42913 * 109.53698 * 65.02656 * 3 2 1 6 6 C 1.42906 * 114.15073 * 181.07677 * 5 3 2 7 7 C 1.53084 * 109.41372 * 298.87334 * 6 5 3 8 8 C 1.53174 * 109.16456 * 57.61236 * 7 6 5 9 9 C 1.53091 * 109.48142 * 185.00050 * 3 2 1 10 10 H 1.09002 * 109.52401 * 62.50061 * 9 3 2 11 11 C 1.50697 * 109.52162 * 302.37434 * 9 3 2 12 12 O 1.21286 * 120.00215 * 0.13261 * 11 9 3 13 13 N 1.34775 * 119.99974 * 180.12532 * 11 9 3 14 14 C 1.46504 * 120.00074 * 180.02562 * 13 11 9 15 15 C 1.53951 * 113.57957 * 252.72158 * 14 13 11 16 16 C 1.52904 * 86.78193 * 220.66251 * 15 14 13 17 17 C 1.52910 * 121.13843 * 150.61736 * 16 15 14 18 18 C 1.53960 * 86.78014 * 100.82071 * 17 16 15 19 19 N 1.46498 * 113.57657 * 270.12930 * 18 17 16 20 20 C 1.36938 * 120.00274 * 252.71998 * 19 18 17 21 21 H 1.08000 * 119.99492 * 0.02562 * 20 19 18 22 22 C 1.38809 * 120.00368 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00284 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99873 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47060 * 90.00089 * 24 22 20 26 26 H 1.48503 * 109.47462 * 210.00379 * 24 22 20 27 27 H 1.48503 * 109.47299 * 330.00221 * 24 22 20 28 28 C 1.52917 * 121.13604 * 259.17985 * 16 15 14 29 29 C 1.52906 * 88.04362 * 24.89555 * 16 15 14 30 30 H 1.08996 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46854 * 300.00423 * 1 2 3 32 32 H 1.09005 * 109.47089 * 60.00324 * 1 2 3 33 33 H 1.09002 * 109.47307 * 239.99860 * 2 1 3 34 34 H 1.09005 * 109.47089 * 119.99676 * 2 1 3 35 35 H 1.09004 * 109.47895 * 178.88906 * 6 5 3 36 36 H 1.09000 * 109.48922 * 58.86734 * 6 5 3 37 37 H 1.09007 * 109.52269 * 297.70364 * 7 6 5 38 38 H 1.09000 * 109.57238 * 177.55134 * 7 6 5 39 39 H 1.09004 * 109.54572 * 183.15149 * 8 7 6 40 40 H 1.08995 * 109.54814 * 62.88826 * 8 7 6 41 41 H 0.96999 * 119.99913 * 0.02562 * 13 11 9 42 42 H 1.08999 * 112.82391 * 23.90975 * 14 13 11 43 43 H 1.09000 * 113.66042 * 335.13380 * 15 14 13 44 44 H 1.08994 * 113.66400 * 106.19127 * 15 14 13 45 45 H 1.09004 * 113.66570 * 215.28657 * 17 16 15 46 46 H 1.08993 * 113.66214 * 346.35075 * 17 16 15 47 47 H 1.08997 * 113.64626 * 139.35180 * 18 17 16 48 48 H 0.97002 * 120.00039 * 72.72634 * 19 18 17 49 49 H 0.97002 * 120.00282 * 180.02562 * 23 22 20 50 50 H 1.09002 * 113.66048 * 13.65498 * 28 16 15 51 51 H 1.08997 * 113.66255 * 144.70551 * 28 16 15 52 52 H 1.09000 * 113.66436 * 220.62827 * 29 16 15 53 53 H 1.09009 * 113.74563 * 89.58495 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9819 -0.8414 5 8 1.6633 2.0826 1.2209 6 6 2.0713 3.4490 1.3149 7 6 3.5983 3.5301 1.2426 8 6 4.0747 2.8880 -0.0639 9 6 3.5658 1.4446 -0.1258 10 1 3.8535 0.9974 -1.0773 11 6 4.1655 0.6502 1.0057 12 8 3.4442 0.1307 1.8309 13 7 5.5032 0.5169 1.1006 14 6 6.0862 -0.2558 2.2004 15 6 6.7730 0.6147 3.2684 16 6 7.8699 -0.4499 3.3070 17 6 9.3125 -0.0865 3.6604 18 6 9.0138 -0.6336 5.0682 19 7 8.4946 0.3780 5.9920 20 6 9.2887 0.8573 6.9993 21 1 10.2980 0.4899 7.1125 22 6 8.7966 1.8154 7.8749 23 7 9.5600 2.2765 8.8428 24 14 7.0512 2.4514 7.6787 25 1 6.1242 1.6068 8.4742 26 1 6.9785 3.8545 8.1596 27 1 6.6631 2.3984 6.2462 28 6 7.9164 -1.4972 4.4203 29 6 7.4776 -0.8310 1.8791 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 1.7295 3.8661 2.2621 36 1 1.6377 4.0155 0.4907 37 1 4.0318 2.9979 2.0894 38 1 3.9102 4.5742 1.2703 39 1 5.1642 2.8921 -0.0962 40 1 3.6815 3.4499 -0.9110 41 1 6.0801 0.9326 0.4408 42 1 5.3954 -0.9908 2.6134 43 1 7.1133 1.5799 2.8934 44 1 6.2081 0.6947 4.1970 45 1 10.0562 -0.6668 3.1143 46 1 9.5110 0.9850 3.6405 47 1 9.8317 -1.2149 5.4939 48 1 7.5882 0.7082 5.8901 49 1 9.2160 2.9457 9.4550 50 1 6.9996 -1.5526 5.0074 51 1 8.2676 -2.4739 4.0877 52 1 7.4755 -1.9058 1.6980 53 1 8.0153 -0.2730 1.1124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963940210.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:56 Heat of formation + Delta-G solvation = -57.156883 kcal Electronic energy + Delta-G solvation = -30777.864725 eV Core-core repulsion = 26842.880009 eV Total energy + Delta-G solvation = -3934.984716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.96874 -41.22700 -39.14528 -37.23301 -35.43572 -34.85862 -34.68694 -33.39219 -32.01363 -30.88478 -26.85968 -26.62322 -26.30550 -26.04512 -25.32668 -23.91677 -22.58153 -22.26823 -21.35791 -20.61976 -19.77762 -18.79859 -17.99170 -17.55970 -17.00671 -16.89916 -16.77108 -16.27498 -16.22446 -15.86302 -15.60289 -15.13897 -15.06773 -14.70864 -14.56112 -14.43327 -14.21680 -13.94877 -13.72037 -13.59747 -13.45375 -13.31722 -13.27596 -13.09446 -12.90512 -12.62733 -12.58405 -12.40580 -12.26769 -12.12141 -12.02619 -11.85309 -11.73416 -11.51674 -11.34937 -11.25236 -11.11375 -10.90048 -10.75970 -10.48186 -10.21875 -9.89311 -9.30408 -8.07441 -5.38457 1.30125 1.32127 1.38065 1.72786 2.24485 2.40984 2.93116 3.23083 3.42604 3.50951 3.54801 3.65729 3.68805 3.75154 3.79992 3.92951 3.96536 3.98601 4.07310 4.24349 4.28542 4.31894 4.39148 4.47545 4.49438 4.59240 4.70737 4.73127 4.75519 4.77033 4.83196 4.85687 4.89618 4.93672 4.95067 4.99272 5.05034 5.08231 5.10461 5.12213 5.15399 5.22813 5.32294 5.39991 5.43502 5.51854 5.60844 5.71179 5.78827 6.19744 6.43331 6.66220 7.04415 7.40566 7.83824 8.00627 9.14371 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.003121 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.158769 B = 8970.084106 C =10056.506327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.108 3.892 4 H 0.085 0.915 5 O -0.392 6.392 6 C 0.054 3.946 7 C -0.162 4.162 8 C -0.108 4.108 9 C -0.138 4.138 10 H 0.137 0.863 11 C 0.514 3.486 12 O -0.563 6.563 13 N -0.710 5.710 14 C 0.132 3.868 15 C -0.133 4.133 16 C -0.092 4.092 17 C -0.141 4.141 18 C 0.144 3.856 19 N -0.736 5.736 20 C -0.226 4.226 21 H 0.063 0.937 22 C -0.059 4.059 23 N -0.981 5.981 24 Si 0.943 3.057 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.261 1.261 28 C -0.124 4.124 29 C -0.104 4.104 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.413 0.587 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.033 0.967 45 H 0.104 0.896 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.363 0.637 49 H 0.258 0.742 50 H 0.051 0.949 51 H 0.116 0.884 52 H 0.091 0.909 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.554 -2.206 -30.051 33.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.050 3.950 4 H 0.103 0.897 5 O -0.311 6.311 6 C -0.022 4.022 7 C -0.200 4.200 8 C -0.145 4.145 9 C -0.160 4.160 10 H 0.155 0.845 11 C 0.302 3.698 12 O -0.441 6.441 13 N -0.362 5.362 14 C 0.027 3.973 15 C -0.172 4.172 16 C -0.093 4.093 17 C -0.181 4.181 18 C 0.035 3.965 19 N -0.377 5.377 20 C -0.357 4.357 21 H 0.081 0.919 22 C -0.251 4.251 23 N -0.632 5.632 24 Si 0.771 3.229 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.186 1.186 28 C -0.163 4.163 29 C -0.142 4.142 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.250 0.750 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.052 0.948 45 H 0.122 0.878 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.196 0.804 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.134 0.866 52 H 0.109 0.891 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.995 -2.651 -29.175 32.466 hybrid contribution -0.401 1.126 0.774 1.424 sum -14.397 -1.525 -28.401 31.878 Atomic orbital electron populations 1.21642 0.95222 1.01513 1.01563 1.21854 0.96851 0.94917 1.03513 1.22058 0.91139 0.94585 0.87209 0.89744 1.88046 1.78268 1.25103 1.39675 1.22661 0.93900 0.83128 1.02543 1.22219 0.97093 1.02404 0.98267 1.21638 1.02182 0.92528 0.98161 1.22194 0.97560 0.97435 0.98780 0.84549 1.20997 0.82264 0.79868 0.86693 1.90665 1.60721 1.49265 1.43487 1.45940 1.06720 1.54027 1.29464 1.22292 0.94110 0.93578 0.87369 1.23190 0.96947 0.98439 0.98594 1.22036 0.94885 0.96643 0.95696 1.23427 0.95856 1.00626 0.98228 1.21441 0.95924 0.89953 0.89184 1.42539 1.13760 1.47829 1.33615 1.19120 0.96206 1.16319 1.04017 0.91881 1.25345 1.01499 1.00341 0.97889 1.69848 1.37911 1.34755 1.20670 0.85598 0.81410 0.77540 0.78322 1.20910 1.21815 1.18625 1.23185 0.98811 0.98276 0.96014 1.23080 0.93013 1.02456 0.95672 0.92612 0.94141 0.91645 0.89515 0.91262 0.89975 0.90899 0.94594 0.89074 0.89575 0.87798 0.75000 0.89113 0.89812 0.94807 0.87793 0.93443 0.92163 0.80370 0.93314 0.93058 0.86628 0.89087 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.81 71.98 0.71 -1.79 16 2 C -0.13 -2.56 5.21 30.60 0.16 -2.40 16 3 C 0.11 1.88 2.22 30.63 0.07 1.95 16 4 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 5 O -0.39 -9.51 9.02 -133.15 -1.20 -10.71 16 6 C 0.05 1.00 6.84 72.01 0.49 1.50 16 7 C -0.16 -2.80 5.88 30.68 0.18 -2.62 16 8 C -0.11 -1.19 5.46 30.71 0.17 -1.03 16 9 C -0.14 -1.96 2.59 -11.45 -0.03 -1.99 16 10 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 11 C 0.51 11.46 5.64 87.66 0.49 11.96 16 12 O -0.56 -18.22 12.52 12.79 0.16 -18.06 16 13 N -0.71 -13.13 5.23 -439.52 -2.30 -15.43 16 14 C 0.13 3.08 4.24 45.62 0.19 3.27 16 15 C -0.13 -3.91 7.18 30.88 0.22 -3.69 16 16 C -0.09 -2.43 1.02 -52.31 -0.05 -2.48 16 17 C -0.14 -4.25 7.64 30.89 0.24 -4.01 16 18 C 0.14 5.42 4.56 45.63 0.21 5.63 16 19 N -0.74 -35.44 5.11 -319.93 -1.63 -37.08 16 20 C -0.23 -13.14 10.45 84.03 0.88 -12.26 16 21 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 22 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 23 N -0.98 -64.12 13.97 21.65 0.30 -63.82 16 24 Si 0.94 48.10 27.73 68.60 1.90 50.01 16 25 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 27 H -0.26 -12.47 6.52 99.48 0.65 -11.82 16 28 C -0.12 -3.65 7.59 30.89 0.23 -3.42 16 29 C -0.10 -1.89 7.59 30.88 0.23 -1.66 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.87 7.83 -2.39 -0.02 0.85 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.88 5.45 -2.38 -0.01 1.87 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.04 0.89 7.39 -2.38 -0.02 0.88 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 0.75 7.50 -2.38 -0.02 0.73 16 40 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.41 4.80 8.12 -92.71 -0.75 4.05 16 42 H 0.09 2.57 7.47 -2.39 -0.02 2.55 16 43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.03 1.22 7.47 -2.39 -0.02 1.21 16 45 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.06 2.34 8.10 -2.39 -0.02 2.32 16 48 H 0.36 17.38 4.62 -92.71 -0.43 16.95 16 49 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 50 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 52 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 53 H 0.11 1.48 8.12 -2.38 -0.02 1.47 16 Total: -1.00 -78.92 404.29 1.74 -77.18 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.35 Total: 34.09 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 4.86 Total: -16.18 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -3.63 Total: -116.32 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.04 Total: -28.77 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.90 Total: 50.01 kcal Total: -78.92 1.74 -77.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963940210.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.023 kcal (2) G-P(sol) polarization free energy of solvation -78.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds