Wall clock time and date at job start Tue Mar 31 2020 19:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47162 * 2 1 4 4 H 1.09008 * 109.47787 * 54.97507 * 3 2 1 5 5 C 1.53085 * 109.48166 * 174.99755 * 3 2 1 6 6 C 1.53175 * 109.16446 * 177.60337 * 5 3 2 7 7 H 1.08998 * 109.54486 * 183.15469 * 6 5 3 8 8 C 1.50703 * 109.54322 * 62.97665 * 6 5 3 9 9 O 1.21274 * 119.99954 * 242.28997 * 8 6 5 10 10 N 1.34773 * 119.99593 * 62.29153 * 8 6 5 11 11 C 1.47178 * 136.00220 * 4.99403 * 10 8 6 12 12 C 1.53181 * 87.74147 * 153.41888 * 11 10 8 13 13 C 1.47170 * 135.99334 * 185.35485 * 10 8 6 14 14 C 1.52508 * 114.45250 * 272.10701 * 12 11 10 15 15 C 1.53209 * 109.35076 * 169.97756 * 14 12 11 16 16 C 1.53151 * 109.34193 * 58.89658 * 15 14 12 17 17 N 1.46884 * 109.12150 * 303.48483 * 16 15 14 18 18 C 1.36940 * 120.70099 * 235.42145 * 17 16 15 19 19 H 1.08004 * 119.99905 * 31.19421 * 18 17 16 20 20 C 1.38808 * 120.00376 * 211.19101 * 18 17 16 21 21 N 1.31613 * 119.99935 * 17.44697 * 20 18 17 22 22 Si 1.86801 * 120.00205 * 197.44731 * 20 18 17 23 23 H 1.48503 * 109.47026 * 89.99856 * 22 20 18 24 24 H 1.48491 * 109.47284 * 209.99882 * 22 20 18 25 25 H 1.48498 * 109.47263 * 330.00189 * 22 20 18 26 26 C 1.47140 * 118.60090 * 55.40343 * 17 16 15 27 27 C 1.53184 * 109.03609 * 303.02254 * 6 5 3 28 28 C 1.53083 * 109.16193 * 56.97917 * 27 6 5 29 29 O 1.42897 * 109.41821 * 302.38851 * 28 27 6 30 30 H 1.08997 * 109.47334 * 299.99773 * 1 2 3 31 31 H 1.08999 * 109.46821 * 60.00195 * 1 2 3 32 32 H 1.09002 * 109.47125 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46934 * 239.99944 * 2 1 3 34 34 H 1.08996 * 109.46678 * 120.00560 * 2 1 3 35 35 H 1.09005 * 109.52038 * 57.70400 * 5 3 2 36 36 H 1.09000 * 109.52625 * 297.51145 * 5 3 2 37 37 H 1.09000 * 113.48817 * 268.11844 * 11 10 8 38 38 H 1.08998 * 113.48948 * 38.61917 * 11 10 8 39 39 H 1.08996 * 113.49714 * 321.37592 * 13 10 8 40 40 H 1.09001 * 113.48807 * 91.88661 * 13 10 8 41 41 H 1.08998 * 109.49062 * 289.94181 * 14 12 11 42 42 H 1.09004 * 109.48901 * 50.01531 * 14 12 11 43 43 H 1.09000 * 109.49414 * 178.85497 * 15 14 12 44 44 H 1.08997 * 109.49696 * 298.93399 * 15 14 12 45 45 H 1.09005 * 109.52612 * 63.37708 * 16 15 14 46 46 H 1.09001 * 109.52657 * 183.58381 * 16 15 14 47 47 H 0.97003 * 120.00218 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.64199 * 189.08111 * 26 17 16 49 49 H 1.09002 * 109.64425 * 68.46036 * 26 17 16 50 50 H 1.09000 * 109.51851 * 176.88809 * 27 6 5 51 51 H 1.08992 * 109.52127 * 297.07093 * 27 6 5 52 52 H 1.09007 * 109.47845 * 182.40562 * 28 27 6 53 53 H 1.08999 * 109.49469 * 62.38100 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 0.8416 5 6 3.5657 1.4446 0.1258 6 6 4.0733 2.8885 0.0649 7 1 5.1628 2.8937 0.0976 8 6 3.5300 3.6638 1.2374 9 8 2.8018 4.6153 1.0502 10 7 3.8535 3.2997 2.4941 11 6 4.7436 2.3035 3.1118 12 6 4.8332 3.2281 4.3298 13 6 3.4667 3.7195 3.8505 14 6 5.9380 4.2761 4.2469 15 6 5.7683 5.2841 5.3882 16 6 5.8280 4.5468 6.7292 17 7 4.8005 3.4972 6.7474 18 6 3.8652 3.4517 7.7466 19 1 3.5293 4.3656 8.2139 20 6 3.3488 2.2310 8.1589 21 7 3.9773 1.1148 7.8568 22 14 1.7618 2.1724 9.1425 23 1 0.6077 2.0657 8.2141 24 1 1.7819 0.9932 10.0448 25 1 1.6341 3.4118 9.9504 26 6 4.7971 2.4961 5.6692 27 6 3.5968 3.5308 -1.2416 28 6 2.0700 3.4481 -1.3145 29 8 1.6632 2.0815 -1.2215 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.9995 0.8711 -0.6934 36 1 3.8534 0.9972 1.0773 37 1 4.2524 1.3535 3.3226 38 1 5.6906 2.1818 2.5861 39 1 3.3328 4.7966 3.9504 40 1 2.6322 3.1504 4.2601 41 1 6.9090 3.7885 4.3338 42 1 5.8756 4.7955 3.2906 43 1 6.5687 6.0226 5.3433 44 1 4.8050 5.7848 5.2910 45 1 6.8123 4.0953 6.8533 46 1 5.6441 5.2510 7.5407 47 1 3.6167 0.2617 8.1451 48 1 3.8917 1.8924 5.7325 49 1 5.6748 1.8561 5.7606 50 1 3.9068 4.5755 -1.2680 51 1 4.0313 2.9996 -2.0883 52 1 1.7282 3.8654 -2.2618 53 1 1.6353 4.0137 -0.4904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982106450.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:37 Heat of formation + Delta-G solvation = -55.131254 kcal Electronic energy + Delta-G solvation = -31595.555950 eV Core-core repulsion = 27660.659072 eV Total energy + Delta-G solvation = -3934.896878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.20441 -40.87425 -38.97807 -37.45057 -34.95561 -34.82908 -34.55989 -32.01748 -31.69777 -30.68444 -28.04861 -27.21332 -27.04905 -26.13930 -24.70867 -24.00996 -22.90889 -22.27558 -21.92299 -19.85185 -19.21405 -18.59563 -17.92326 -17.47760 -17.21222 -17.02345 -16.59947 -16.45854 -15.82934 -15.72199 -15.34538 -15.22565 -14.94224 -14.72535 -14.60310 -14.32949 -14.26695 -14.10025 -14.00952 -13.63953 -13.32064 -13.19311 -13.08871 -12.90272 -12.76236 -12.66916 -12.62574 -12.56702 -12.25232 -12.14019 -12.00059 -11.90617 -11.75174 -11.63487 -11.52609 -11.36049 -11.30859 -11.00394 -10.69667 -10.52809 -10.25805 -9.71486 -8.59278 -7.87106 -5.32359 1.45018 1.48502 1.52767 1.55029 1.84963 2.50965 2.80363 3.20951 3.33105 3.38028 3.54211 3.75180 3.77531 3.86515 3.89745 4.04047 4.10521 4.12526 4.25034 4.32399 4.37367 4.38372 4.42179 4.47896 4.51733 4.57996 4.61525 4.64936 4.66641 4.76461 4.78108 4.82623 4.87379 4.90399 4.99595 5.01030 5.05051 5.05171 5.05820 5.11540 5.15662 5.24200 5.26707 5.28768 5.37395 5.43625 5.54062 5.67166 5.72040 6.25969 6.42351 6.77556 7.08551 7.18427 7.88058 8.41651 9.18770 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012563 B = 0.003656 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.175544 B = 7656.825122 C = 9033.521731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.086 3.914 4 H 0.021 0.979 5 C -0.135 4.135 6 C -0.101 4.101 7 H 0.126 0.874 8 C 0.536 3.464 9 O -0.585 6.585 10 N -0.637 5.637 11 C 0.119 3.881 12 C -0.106 4.106 13 C 0.122 3.878 14 C -0.073 4.073 15 C -0.125 4.125 16 C 0.142 3.858 17 N -0.607 5.607 18 C -0.263 4.263 19 H 0.057 0.943 20 C -0.034 4.034 21 N -0.925 5.925 22 Si 0.951 3.049 23 H -0.289 1.289 24 H -0.293 1.293 25 H -0.273 1.273 26 C 0.208 3.792 27 C -0.128 4.128 28 C 0.047 3.953 29 O -0.387 6.387 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.042 0.958 45 H 0.021 0.979 46 H 0.046 0.954 47 H 0.251 0.749 48 H 0.049 0.951 49 H 0.013 0.987 50 H 0.075 0.925 51 H 0.102 0.898 52 H 0.105 0.895 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 -1.144 -18.766 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C 0.028 3.972 4 H 0.039 0.961 5 C -0.172 4.172 6 C -0.122 4.122 7 H 0.143 0.857 8 C 0.328 3.672 9 O -0.466 6.466 10 N -0.370 5.370 11 C -0.004 4.004 12 C -0.108 4.108 13 C -0.001 4.001 14 C -0.110 4.110 15 C -0.164 4.164 16 C 0.016 3.984 17 N -0.330 5.330 18 C -0.394 4.394 19 H 0.074 0.926 20 C -0.231 4.231 21 N -0.570 5.570 22 Si 0.780 3.220 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.198 1.198 26 C 0.081 3.919 27 C -0.165 4.165 28 C -0.029 4.029 29 O -0.307 6.307 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.039 0.961 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.031 0.969 50 H 0.094 0.906 51 H 0.120 0.880 52 H 0.123 0.877 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.895 -0.821 -19.159 19.394 hybrid contribution -1.149 0.233 1.421 1.842 sum 1.746 -0.588 -17.737 17.833 Atomic orbital electron populations 1.21706 0.95708 1.02116 1.01188 1.21558 0.96493 0.93105 1.03774 1.22170 0.94295 0.94613 0.86123 0.96087 1.22219 0.95511 0.94401 1.05109 1.21428 1.03318 0.95596 0.91834 0.85659 1.20892 0.79632 0.83862 0.82859 1.90619 1.40037 1.31017 1.84934 1.49837 1.45113 1.38144 1.03949 1.23167 0.94579 0.92458 0.90172 1.22404 0.94854 0.97524 0.96022 1.22782 0.97887 0.99795 0.79662 1.20988 0.96989 0.95155 0.97885 1.21900 1.01074 0.97831 0.95547 1.21018 0.90972 0.90513 0.95853 1.44228 1.32281 1.31433 1.25103 1.19346 1.15379 0.91658 1.12973 0.92567 1.25627 1.01714 0.95808 0.99937 1.70125 1.38771 0.97351 1.50743 0.85517 0.80907 0.77076 0.78463 1.21563 1.21929 1.19821 1.20272 0.98977 0.89354 0.83249 1.21959 0.96425 1.01994 0.96163 1.22811 0.94928 0.82531 1.02658 1.87858 1.79290 1.25208 1.38326 0.94350 0.92871 0.91145 0.89652 0.89620 0.87377 0.89584 0.89055 0.87305 0.92712 0.91759 0.90436 0.92099 0.90028 0.93894 0.96082 0.93532 0.93983 0.93221 0.96882 0.90610 0.87960 0.87705 0.93882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.81 71.98 0.71 -2.34 16 2 C -0.11 -2.14 5.64 30.59 0.17 -1.97 16 3 C 0.09 2.00 2.42 30.62 0.07 2.07 16 4 H 0.02 0.63 7.38 -2.38 -0.02 0.62 16 5 C -0.13 -2.45 4.85 30.68 0.15 -2.30 16 6 C -0.10 -2.05 2.88 -11.42 -0.03 -2.08 16 7 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 8 C 0.54 15.79 6.07 87.66 0.53 16.32 16 9 O -0.58 -21.85 14.57 -3.01 -0.04 -21.90 16 10 N -0.64 -18.64 3.39 -857.51 -2.91 -21.55 16 11 C 0.12 2.98 6.28 83.41 0.52 3.50 16 12 C -0.11 -3.41 0.95 -52.42 -0.05 -3.46 16 13 C 0.12 4.28 7.65 83.33 0.64 4.92 16 14 C -0.07 -2.08 5.10 30.50 0.16 -1.93 16 15 C -0.12 -3.93 6.02 30.71 0.19 -3.74 16 16 C 0.14 5.55 6.45 86.36 0.56 6.10 16 17 N -0.61 -28.57 2.98 -699.70 -2.09 -30.66 16 18 C -0.26 -13.99 9.54 84.03 0.80 -13.18 16 19 H 0.06 3.01 7.89 -2.91 -0.02 2.98 16 20 C -0.03 -1.83 4.88 84.86 0.41 -1.41 16 21 N -0.92 -51.64 11.53 21.65 0.25 -51.39 16 22 Si 0.95 43.90 29.59 68.60 2.03 45.93 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.21 8.82 4.45 86.15 0.38 9.20 16 27 C -0.13 -2.50 5.28 30.68 0.16 -2.33 16 28 C 0.05 1.13 6.55 72.01 0.47 1.61 16 29 O -0.39 -9.72 9.95 -148.98 -1.48 -11.20 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 1.15 7.82 -2.39 -0.02 1.13 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.09 1.49 6.63 -2.39 -0.02 1.47 16 37 H 0.09 2.26 7.98 -2.39 -0.02 2.24 16 38 H 0.11 2.01 8.12 -2.39 -0.02 1.99 16 39 H 0.05 2.09 7.46 -2.39 -0.02 2.07 16 40 H 0.06 2.50 7.96 -2.39 -0.02 2.48 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 1.64 7.96 -2.38 -0.02 1.62 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.04 1.49 7.47 -2.39 -0.02 1.47 16 45 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.05 1.84 7.93 -2.39 -0.02 1.83 16 47 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 48 H 0.05 2.41 6.30 -2.39 -0.02 2.40 16 49 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 51 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 53 H 0.04 1.34 5.75 -2.39 -0.01 1.33 16 Total: -1.00 -65.97 398.88 2.46 -63.51 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.86 Total: 18.27 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 5.84 Total: 8.98 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -4.75 Total: -103.59 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -1.53 Total: -33.10 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -65.97 2.46 -63.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982106450.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.381 kcal (2) G-P(sol) polarization free energy of solvation -65.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds