Wall clock time and date at job start Tue Mar 31 2020 19:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47256 * 2 1 4 4 H 1.09004 * 109.47576 * 304.97571 * 3 2 1 5 5 C 1.53086 * 109.49082 * 184.94636 * 3 2 1 6 6 C 1.53174 * 109.16215 * 182.40005 * 5 3 2 7 7 H 1.09000 * 109.61646 * 176.89098 * 6 5 3 8 8 C 1.50702 * 109.54370 * 297.11200 * 6 5 3 9 9 O 1.21283 * 120.00072 * 120.99253 * 8 6 5 10 10 N 1.34777 * 120.00105 * 300.99301 * 8 6 5 11 11 C 1.47670 * 134.45649 * 183.50714 * 10 8 6 12 12 C 1.53431 * 85.97527 * 155.74991 * 11 10 8 13 13 C 1.47675 * 134.45244 * 3.56224 * 10 8 6 14 14 C 1.52631 * 113.72741 * 137.84586 * 12 11 10 15 15 C 1.53192 * 109.34383 * 188.77574 * 14 12 11 16 16 C 1.53135 * 109.35429 * 300.93732 * 15 14 12 17 17 N 1.46897 * 109.10049 * 56.44192 * 16 15 14 18 18 C 1.36934 * 120.69239 * 124.64165 * 17 16 15 19 19 H 1.08002 * 119.99610 * 325.85076 * 18 17 16 20 20 C 1.38811 * 120.00261 * 145.84660 * 18 17 16 21 21 N 1.31617 * 120.00281 * 348.88998 * 20 18 17 22 22 Si 1.86800 * 120.00059 * 168.88581 * 20 18 17 23 23 H 1.48498 * 109.47207 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46912 * 120.00138 * 22 20 18 25 25 H 1.48496 * 109.47436 * 240.00092 * 22 20 18 26 26 C 1.47123 * 118.62164 * 304.91721 * 17 16 15 27 27 C 1.53175 * 109.03738 * 56.97843 * 6 5 3 28 28 C 1.53082 * 109.16449 * 303.01997 * 27 6 5 29 29 O 1.42898 * 109.48102 * 64.99301 * 3 2 1 30 30 H 1.08997 * 109.47031 * 60.00370 * 1 2 3 31 31 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47390 * 300.00388 * 1 2 3 33 33 H 1.08999 * 109.47057 * 239.99184 * 2 1 3 34 34 H 1.09010 * 109.46487 * 119.99310 * 2 1 3 35 35 H 1.08999 * 109.52158 * 62.49396 * 5 3 2 36 36 H 1.08999 * 109.52037 * 302.30701 * 5 3 2 37 37 H 1.09000 * 113.79278 * 41.48184 * 11 10 8 38 38 H 1.09008 * 113.79434 * 270.01971 * 11 10 8 39 39 H 1.09003 * 113.79075 * 89.98319 * 13 10 8 40 40 H 1.09001 * 113.78846 * 318.50746 * 13 10 8 41 41 H 1.09001 * 109.49880 * 68.81137 * 14 12 11 42 42 H 1.09003 * 109.49403 * 308.73397 * 14 12 11 43 43 H 1.08998 * 109.49361 * 180.96981 * 15 14 12 44 44 H 1.09006 * 109.48808 * 60.89965 * 15 14 12 45 45 H 1.08999 * 109.53388 * 296.55685 * 16 15 14 46 46 H 1.08993 * 109.59879 * 176.36915 * 16 15 14 47 47 H 0.97003 * 120.00566 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.64000 * 170.82524 * 26 17 16 49 49 H 1.08996 * 109.63927 * 291.44700 * 26 17 16 50 50 H 1.09002 * 109.52217 * 62.92749 * 27 6 5 51 51 H 1.08998 * 109.52251 * 183.11131 * 27 6 5 52 52 H 1.09009 * 109.48243 * 177.58888 * 28 27 6 53 53 H 1.09004 * 109.48258 * 297.61359 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9815 -0.8421 5 6 3.5659 1.4448 -0.1244 6 6 4.0732 2.8888 -0.0633 7 1 5.1627 2.8956 -0.0958 8 6 3.5291 3.6643 -1.2354 9 8 2.8494 4.6509 -1.0468 10 7 3.7977 3.2614 -2.4932 11 6 3.4972 3.7956 -3.8367 12 6 4.7243 3.0040 -4.3075 13 6 4.5097 2.1084 -3.0800 14 6 4.5168 2.2824 -5.6364 15 6 5.7078 1.3564 -5.9024 16 6 6.9955 2.1842 -5.9411 17 7 7.1279 2.9265 -4.6804 18 6 8.2544 2.8032 -3.9117 19 1 8.7751 1.8581 -3.8645 20 6 8.7271 3.8928 -3.1932 21 7 8.2323 5.0921 -3.4149 22 14 10.0656 3.6570 -1.9117 23 1 10.4493 2.2235 -1.8547 24 1 11.2514 4.4722 -2.2787 25 1 9.5605 4.0879 -0.5834 26 6 6.0224 3.8003 -4.2576 27 6 3.5954 3.5314 1.2424 28 6 2.0685 3.4485 1.3141 29 8 1.6620 2.0816 1.2209 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8902 35 1 3.8544 0.9973 -1.0755 36 1 3.9990 0.8715 0.6952 37 1 3.6141 4.8764 -3.9164 38 1 2.5558 3.4362 -4.2524 39 1 3.8695 1.2469 -3.2706 40 1 5.4310 1.8488 -2.5585 41 1 4.4390 3.0149 -6.4399 42 1 3.6009 1.6930 -5.5912 43 1 5.5703 0.8527 -6.8592 44 1 5.7762 0.6143 -5.1069 45 1 6.9529 2.8858 -6.7742 46 1 7.8522 1.5221 -6.0659 47 1 8.5629 5.8536 -2.9131 48 1 6.1987 4.1477 -3.2396 49 1 5.9515 4.6537 -4.9320 50 1 4.0292 3.0003 2.0898 51 1 3.9052 4.5761 1.2689 52 1 1.7258 3.8659 2.2610 53 1 1.6346 4.0139 0.4893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982106453.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:49 Heat of formation + Delta-G solvation = -60.438123 kcal Electronic energy + Delta-G solvation = -32080.108328 eV Core-core repulsion = 28144.981327 eV Total energy + Delta-G solvation = -3935.127001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.13585 -40.79194 -38.97372 -37.33094 -34.95379 -34.85171 -34.60240 -32.13833 -31.44848 -30.61221 -27.95850 -27.35213 -27.11900 -26.11168 -24.69459 -23.96379 -22.97059 -22.20271 -21.74661 -19.79795 -19.44402 -18.55762 -17.88580 -17.46381 -17.20184 -16.82108 -16.71722 -16.53906 -15.79622 -15.68331 -15.27036 -15.18846 -14.95782 -14.70385 -14.51632 -14.42028 -14.26797 -14.12220 -13.77354 -13.56986 -13.33268 -13.22170 -13.09371 -12.88740 -12.76855 -12.72761 -12.63829 -12.54555 -12.24853 -12.16091 -11.98032 -11.86382 -11.79245 -11.63369 -11.49679 -11.37317 -11.17724 -11.01732 -10.65832 -10.56101 -10.26934 -9.64970 -8.57527 -7.88219 -5.40356 1.41715 1.44958 1.54018 1.57115 1.84268 2.47978 2.80048 3.22616 3.32017 3.44512 3.52021 3.73361 3.75892 3.84906 3.99373 4.03699 4.11994 4.14399 4.24972 4.34592 4.39581 4.42290 4.44454 4.48935 4.56085 4.58168 4.60486 4.62774 4.72560 4.77653 4.81517 4.87264 4.90035 4.92133 5.01687 5.05471 5.06827 5.08714 5.10667 5.12960 5.21862 5.27144 5.30617 5.37186 5.44406 5.48922 5.59917 5.68772 5.72823 6.24901 6.41697 6.73320 7.09870 7.16365 7.86513 8.41289 9.17406 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.004276 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.361473 B = 6545.855978 C = 7646.042166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.090 3.910 4 H 0.035 0.965 5 C -0.134 4.134 6 C -0.109 4.109 7 H 0.093 0.907 8 C 0.532 3.468 9 O -0.586 6.586 10 N -0.638 5.638 11 C 0.113 3.887 12 C -0.105 4.105 13 C 0.127 3.873 14 C -0.089 4.089 15 C -0.121 4.121 16 C 0.136 3.864 17 N -0.605 5.605 18 C -0.255 4.255 19 H 0.068 0.932 20 C -0.043 4.043 21 N -0.935 5.935 22 Si 0.955 3.045 23 H -0.259 1.259 24 H -0.295 1.295 25 H -0.295 1.295 26 C 0.217 3.783 27 C -0.131 4.131 28 C 0.058 3.942 29 O -0.386 6.386 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.007 0.993 46 H 0.051 0.949 47 H 0.245 0.755 48 H 0.039 0.961 49 H -0.014 1.014 50 H 0.095 0.905 51 H 0.065 0.935 52 H 0.107 0.893 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.532 -12.856 2.897 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C 0.032 3.968 4 H 0.053 0.947 5 C -0.172 4.172 6 C -0.130 4.130 7 H 0.111 0.889 8 C 0.323 3.677 9 O -0.468 6.468 10 N -0.371 5.371 11 C -0.009 4.009 12 C -0.107 4.107 13 C 0.006 3.994 14 C -0.127 4.127 15 C -0.160 4.160 16 C 0.011 3.989 17 N -0.328 5.328 18 C -0.385 4.385 19 H 0.086 0.914 20 C -0.239 4.239 21 N -0.581 5.581 22 Si 0.784 3.216 23 H -0.183 1.183 24 H -0.222 1.222 25 H -0.222 1.222 26 C 0.092 3.908 27 C -0.169 4.169 28 C -0.019 4.019 29 O -0.305 6.305 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.025 0.975 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.004 0.996 50 H 0.113 0.887 51 H 0.083 0.917 52 H 0.125 0.875 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.948 -12.254 3.397 18.875 hybrid contribution 1.446 1.397 0.436 2.057 sum -12.502 -10.857 3.833 16.996 Atomic orbital electron populations 1.21693 0.95114 1.02226 1.01452 1.21569 0.96846 0.92515 1.03877 1.22203 0.93068 0.95124 0.86400 0.94712 1.22246 0.96579 0.93379 1.04971 1.21380 1.01753 0.97004 0.92874 0.88886 1.20684 0.78968 0.84490 0.83525 1.90589 1.41528 1.29427 1.85238 1.50075 1.55252 1.27608 1.04162 1.23313 0.98823 0.99142 0.79637 1.22572 0.95047 0.96820 0.96306 1.23317 0.95692 0.89781 0.90630 1.21311 0.98994 0.98211 0.94161 1.21886 0.94298 0.97641 1.02141 1.21112 0.97218 0.93627 0.86935 1.44194 1.15334 1.52283 1.20994 1.19455 1.03224 0.94122 1.21726 0.91449 1.25899 1.00185 0.94738 1.03045 1.70153 1.46169 0.98759 1.43005 0.85385 0.79160 0.78249 0.78827 1.18258 1.22248 1.22234 1.19925 0.84181 0.89440 0.97303 1.21959 0.97609 1.01359 0.95954 1.22689 0.93551 0.82793 1.02857 1.87853 1.78858 1.24941 1.38858 0.93406 0.91019 0.93317 0.88814 0.90437 0.89199 0.88471 0.92810 0.86907 0.86485 0.91224 0.92150 0.88909 0.89681 0.91776 0.97457 0.93008 0.94558 0.94220 0.99606 0.88702 0.91666 0.87513 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.81 71.98 0.71 -1.80 16 2 C -0.11 -1.92 5.64 30.60 0.17 -1.75 16 3 C 0.09 2.10 2.42 30.62 0.07 2.17 16 4 H 0.03 0.96 7.38 -2.38 -0.02 0.94 16 5 C -0.13 -3.07 4.82 30.68 0.15 -2.92 16 6 C -0.11 -3.22 2.90 -11.42 -0.03 -3.25 16 7 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 8 C 0.53 19.00 6.04 87.66 0.53 19.53 16 9 O -0.59 -24.55 14.62 -3.04 -0.04 -24.59 16 10 N -0.64 -20.94 3.42 -843.37 -2.89 -23.82 16 11 C 0.11 3.50 7.97 86.29 0.69 4.19 16 12 C -0.11 -3.36 0.87 -52.18 -0.05 -3.41 16 13 C 0.13 3.61 5.44 86.30 0.47 4.08 16 14 C -0.09 -2.21 5.07 30.54 0.15 -2.06 16 15 C -0.12 -3.19 6.01 30.70 0.18 -3.01 16 16 C 0.14 5.09 6.46 86.35 0.56 5.65 16 17 N -0.60 -28.22 2.98 -700.36 -2.09 -30.31 16 18 C -0.25 -13.27 9.54 84.03 0.80 -12.47 16 19 H 0.07 3.40 7.85 -2.91 -0.02 3.38 16 20 C -0.04 -2.34 5.02 84.86 0.43 -1.91 16 21 N -0.94 -55.50 11.38 21.65 0.25 -55.26 16 22 Si 0.96 44.07 29.57 68.60 2.03 46.10 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 26 C 0.22 9.92 4.24 86.05 0.36 10.28 16 27 C -0.13 -3.61 5.27 30.68 0.16 -3.44 16 28 C 0.06 1.57 6.55 72.01 0.47 2.05 16 29 O -0.39 -10.22 9.94 -148.98 -1.48 -11.70 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.95 7.82 -2.39 -0.02 0.93 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.09 1.88 5.87 -2.39 -0.01 1.86 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 1.93 8.09 -2.39 -0.02 1.91 16 38 H 0.11 2.68 8.09 -2.38 -0.02 2.66 16 39 H 0.12 2.37 7.91 -2.39 -0.02 2.36 16 40 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.65 8.12 -2.39 -0.02 1.63 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 1.66 7.93 -2.38 -0.02 1.64 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 47 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 48 H 0.04 2.13 6.35 -2.39 -0.02 2.12 16 49 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 50 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.06 1.98 8.01 -2.39 -0.02 1.96 16 52 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 53 H 0.05 1.57 5.86 -2.38 -0.01 1.56 16 Total: -1.00 -69.46 398.63 2.47 -66.99 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.86 Total: 20.66 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 5.83 Total: 11.93 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -4.73 Total: -109.39 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -1.53 Total: -36.29 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -69.46 2.47 -66.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982106453.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.555 kcal (2) G-P(sol) polarization free energy of solvation -69.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds