Wall clock time and date at job start Tue Mar 31 2020 19:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46636 * 2 1 4 4 H 1.08998 * 110.35554 * 52.86170 * 3 2 1 5 5 O 1.43651 * 110.30996 * 290.71433 * 3 2 1 6 6 C 1.43236 * 109.97157 * 216.66081 * 5 3 2 7 7 C 1.54387 * 107.58793 * 1.70983 * 6 5 3 8 8 C 1.54950 * 110.30746 * 175.00606 * 3 2 1 9 9 H 1.08998 * 111.12391 * 37.39810 * 8 3 2 10 10 C 1.50705 * 111.12208 * 273.28066 * 8 3 2 11 11 O 1.21281 * 119.99984 * 359.97438 * 10 8 3 12 12 N 1.34777 * 119.99586 * 180.02562 * 10 8 3 13 13 C 1.46502 * 119.99400 * 179.97438 * 12 10 8 14 14 C 1.53006 * 115.54686 * 180.02562 * 13 12 10 15 15 C 1.53035 * 109.45975 * 34.41219 * 14 13 12 16 16 C 1.53187 * 109.31042 * 178.62988 * 15 14 13 17 17 N 1.46921 * 108.77833 * 54.63827 * 16 15 14 18 18 C 1.36935 * 120.63677 * 126.36719 * 17 16 15 19 19 H 1.08004 * 119.99664 * 332.45211 * 18 17 16 20 20 C 1.38814 * 120.00325 * 152.44702 * 18 17 16 21 21 N 1.31619 * 120.00014 * 342.77528 * 20 18 17 22 22 Si 1.86797 * 119.99998 * 162.77097 * 20 18 17 23 23 H 1.48503 * 109.47446 * 270.00378 * 22 20 18 24 24 H 1.48503 * 109.47114 * 30.00261 * 22 20 18 25 25 H 1.48501 * 109.47124 * 150.00401 * 22 20 18 26 26 C 1.46930 * 118.73511 * 306.64161 * 17 16 15 27 27 C 1.52761 * 109.00733 * 53.31166 * 26 17 16 28 28 C 1.53003 * 117.50044 * 325.66351 * 13 12 10 29 29 C 1.53001 * 117.50463 * 34.32506 * 13 12 10 30 30 H 1.09006 * 109.46800 * 299.99174 * 1 2 3 31 31 H 1.08994 * 109.47807 * 59.99941 * 1 2 3 32 32 H 1.09003 * 109.46660 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46624 * 240.00344 * 2 1 3 34 34 H 1.08994 * 109.47807 * 120.00059 * 2 1 3 35 35 H 1.08993 * 109.83534 * 121.22719 * 6 5 3 36 36 H 1.08999 * 109.82823 * 242.10917 * 6 5 3 37 37 H 1.09003 * 110.84959 * 263.16683 * 7 6 5 38 38 H 1.09001 * 110.84340 * 139.55171 * 7 6 5 39 39 H 0.96994 * 120.00357 * 359.97438 * 12 10 8 40 40 H 1.08999 * 109.45730 * 154.39100 * 14 13 12 41 41 H 1.08997 * 109.50027 * 58.68278 * 15 14 13 42 42 H 1.08999 * 109.50245 * 298.58029 * 15 14 13 43 43 H 1.08997 * 109.59058 * 294.84773 * 16 15 14 44 44 H 1.09005 * 109.70660 * 174.49085 * 16 15 14 45 45 H 0.97001 * 119.99718 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58739 * 173.14320 * 26 17 16 47 47 H 1.08994 * 109.58811 * 293.56961 * 26 17 16 48 48 H 1.09004 * 109.56300 * 185.55602 * 27 26 17 49 49 H 1.08992 * 109.38882 * 65.51292 * 27 26 17 50 50 H 1.08995 * 117.50005 * 215.00905 * 28 13 12 51 51 H 1.08999 * 117.49916 * 0.02973 * 28 13 12 52 52 H 1.09005 * 117.49353 * 359.97438 * 29 13 12 53 53 H 1.08990 * 117.49806 * 144.99356 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5846 2.0057 0.8146 5 8 1.7568 2.0715 -1.2601 6 6 2.8318 2.9458 -1.6230 7 6 3.9114 2.8386 -0.5246 8 6 3.5841 1.4672 0.1265 9 1 4.0371 0.6482 -0.4322 10 6 4.0112 1.4361 1.5714 11 8 3.1759 1.3978 2.4500 12 7 5.3213 1.4519 1.8873 13 6 5.7364 1.4222 3.2920 14 6 7.2470 1.4443 3.5342 15 6 7.9229 2.3015 2.4617 16 6 9.4308 2.3493 2.7273 17 7 9.9403 0.9737 2.8097 18 6 10.9907 0.5706 2.0291 19 1 11.1707 1.0485 1.0774 20 6 11.8241 -0.4520 2.4609 21 7 11.8317 -0.8036 3.7293 22 14 12.9348 -1.3294 1.2419 23 1 12.2156 -2.4943 0.6664 24 1 13.3115 -0.3930 0.1527 25 1 14.1601 -1.7984 1.9374 26 6 9.2973 0.0369 3.7413 27 6 7.7944 0.0166 3.4683 28 6 4.8480 2.1448 4.3066 29 6 4.8761 0.6148 4.2661 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 3.2489 2.6406 -2.5825 36 1 2.4685 3.9715 -1.6873 37 1 3.8091 3.6464 0.2001 38 1 4.9100 2.8321 -0.9615 39 1 5.9893 1.4828 1.1847 40 1 7.4508 1.8663 4.5183 41 1 7.5157 3.3121 2.4937 42 1 7.7401 1.8661 1.4793 43 1 9.6200 2.8660 3.6681 44 1 9.9307 2.8759 1.9143 45 1 12.4138 -1.5185 4.0309 46 1 9.7073 -0.9625 3.5956 47 1 9.4753 0.3612 4.7666 48 1 7.2958 -0.5991 4.2170 49 1 7.6124 -0.3975 2.4767 50 1 5.3396 2.6354 5.1466 51 1 3.9543 2.6418 3.9291 52 1 4.0009 0.1060 3.8619 53 1 5.3863 0.0989 5.0794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000212726.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:59 Heat of formation + Delta-G solvation = -62.085056 kcal Electronic energy + Delta-G solvation = -30859.712365 eV Core-core repulsion = 26924.513948 eV Total energy + Delta-G solvation = -3935.198417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.91861 -40.47161 -39.14464 -37.38128 -34.62515 -34.54167 -34.42178 -32.78617 -32.09201 -31.42020 -29.38806 -27.41269 -25.40482 -24.35096 -24.08260 -23.62248 -22.94735 -22.01552 -21.39757 -21.17673 -20.19394 -18.97680 -18.64237 -17.52555 -16.90410 -16.76318 -16.54622 -15.94140 -15.82476 -15.65206 -15.29035 -15.03686 -14.90829 -14.84654 -14.58318 -14.45345 -14.34777 -14.30351 -13.94700 -13.89782 -13.27981 -13.10516 -12.95294 -12.70995 -12.68762 -12.56415 -12.46064 -12.28361 -12.12974 -11.94458 -11.90467 -11.89378 -11.78846 -11.72222 -11.62705 -11.53260 -11.12510 -10.93802 -10.65760 -10.51809 -10.42619 -9.56860 -8.65905 -7.85206 -5.29870 1.47976 1.48958 1.49514 1.57739 2.00559 2.52845 2.75767 2.96215 3.29051 3.37628 3.56527 3.58703 3.60530 3.73722 3.87827 4.02656 4.04856 4.14186 4.16296 4.19776 4.28274 4.36819 4.41117 4.48368 4.51432 4.57495 4.66722 4.76822 4.78776 4.81067 4.82568 4.85397 4.95114 4.97262 5.04007 5.05465 5.05939 5.08863 5.18584 5.24383 5.26238 5.27018 5.34987 5.37386 5.39016 5.53036 5.62487 5.68809 5.79479 6.03003 6.41499 6.51913 7.17566 7.18380 7.89841 8.40746 9.21038 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.002823 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.382378 B = 9915.023759 C =10558.900793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.105 3.895 4 H 0.066 0.934 5 O -0.394 6.394 6 C 0.048 3.952 7 C -0.139 4.139 8 C -0.142 4.142 9 H 0.126 0.874 10 C 0.526 3.474 11 O -0.560 6.560 12 N -0.681 5.681 13 C 0.113 3.887 14 C -0.033 4.033 15 C -0.112 4.112 16 C 0.140 3.860 17 N -0.609 5.609 18 C -0.258 4.258 19 H 0.069 0.931 20 C -0.053 4.053 21 N -0.936 5.936 22 Si 0.964 3.036 23 H -0.286 1.286 24 H -0.267 1.267 25 H -0.299 1.299 26 C 0.177 3.823 27 C -0.116 4.116 28 C -0.170 4.170 29 C -0.179 4.179 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.414 0.586 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.012 0.988 44 H 0.057 0.943 45 H 0.248 0.752 46 H 0.050 0.950 47 H -0.007 1.007 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.102 0.898 51 H 0.095 0.905 52 H 0.093 0.907 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.102 6.590 -8.280 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C 0.047 3.953 4 H 0.084 0.916 5 O -0.314 6.314 6 C -0.028 4.028 7 C -0.176 4.176 8 C -0.163 4.163 9 H 0.144 0.856 10 C 0.313 3.687 11 O -0.439 6.439 12 N -0.331 5.331 13 C 0.025 3.975 14 C -0.052 4.052 15 C -0.151 4.151 16 C 0.015 3.985 17 N -0.333 5.333 18 C -0.388 4.388 19 H 0.087 0.913 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.792 3.208 23 H -0.213 1.213 24 H -0.191 1.191 25 H -0.226 1.226 26 C 0.051 3.949 27 C -0.155 4.155 28 C -0.208 4.208 29 C -0.217 4.217 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.132 0.868 39 H 0.252 0.748 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.029 0.971 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.011 0.989 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.120 0.880 51 H 0.114 0.886 52 H 0.112 0.888 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.749 6.444 -7.746 22.171 hybrid contribution 1.435 -0.684 -0.193 1.602 sum -18.314 5.760 -7.939 20.775 Atomic orbital electron populations 1.21666 0.94759 1.02068 1.01716 1.21636 0.97430 0.94170 1.02489 1.22722 0.91704 0.94706 0.86149 0.91631 1.88409 1.43764 1.61080 1.38118 1.23276 0.86545 0.94825 0.98193 1.23127 1.01936 0.94459 0.98117 1.23066 0.98167 1.02024 0.93050 0.85572 1.20448 0.82056 0.75188 0.90961 1.90663 1.52384 1.50494 1.50321 1.45375 1.07160 1.73382 1.07198 1.20692 0.91819 1.05668 0.79328 1.20618 0.88464 0.96130 0.99965 1.21866 0.95474 0.99638 0.98092 1.21060 0.93466 0.85785 0.98227 1.44312 1.35347 1.06923 1.46694 1.19535 1.04265 1.16812 0.98193 0.91288 1.25770 0.99463 1.02723 0.96824 1.70191 1.41756 1.31779 1.14543 0.85317 0.77820 0.78874 0.78754 1.21333 1.19139 1.22587 1.20478 0.89626 0.94474 0.90276 1.21923 0.96500 0.96154 1.00918 1.23400 1.01762 0.95102 1.00556 1.23305 1.02058 0.94839 1.01517 0.93285 0.92456 0.91741 0.90669 0.91332 0.89406 0.90304 0.90382 0.86827 0.74817 0.90544 0.90039 0.91729 0.97051 0.92455 0.94276 0.93108 0.98892 0.92030 0.93070 0.87978 0.88631 0.88823 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.85 71.98 0.71 -1.85 16 2 C -0.12 -2.26 5.66 30.60 0.17 -2.09 16 3 C 0.10 2.09 2.55 31.26 0.08 2.17 16 4 H 0.07 1.57 7.38 -2.39 -0.02 1.55 16 5 O -0.39 -7.84 10.81 -148.98 -1.61 -9.45 16 6 C 0.05 0.65 7.79 72.45 0.56 1.22 16 7 C -0.14 -1.80 6.49 31.85 0.21 -1.60 16 8 C -0.14 -2.42 2.90 -10.08 -0.03 -2.45 16 9 H 0.13 1.83 8.06 -2.39 -0.02 1.81 16 10 C 0.53 11.75 6.86 87.66 0.60 12.35 16 11 O -0.56 -15.76 11.20 -3.03 -0.03 -15.79 16 12 N -0.68 -14.84 5.39 -422.90 -2.28 -17.12 16 13 C 0.11 2.84 2.48 3.61 0.01 2.85 16 14 C -0.03 -0.94 2.28 -10.77 -0.02 -0.96 16 15 C -0.11 -3.13 4.83 30.67 0.15 -2.98 16 16 C 0.14 5.27 6.52 86.36 0.56 5.83 16 17 N -0.61 -28.92 3.00 -699.94 -2.10 -31.03 16 18 C -0.26 -13.60 9.58 84.03 0.81 -12.80 16 19 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 20 C -0.05 -2.87 4.91 84.86 0.42 -2.45 16 21 N -0.94 -54.71 11.19 21.65 0.24 -54.47 16 22 Si 0.96 43.85 29.59 68.60 2.03 45.88 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 26 C 0.18 8.21 5.28 86.22 0.46 8.67 16 27 C -0.12 -4.05 5.20 30.53 0.16 -3.89 16 28 C -0.17 -4.27 9.37 30.62 0.29 -3.99 16 29 C -0.18 -4.76 8.91 30.62 0.27 -4.49 16 30 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 1.03 7.99 -2.39 -0.02 1.01 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.11 8.03 -2.39 -0.02 1.09 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.41 7.86 6.66 -92.71 -0.62 7.24 16 40 H 0.08 2.29 7.90 -2.39 -0.02 2.27 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 1.71 6.50 -2.39 -0.02 1.69 16 43 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.06 2.10 7.93 -2.38 -0.02 2.08 16 45 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.05 2.72 6.04 -2.39 -0.01 2.71 16 47 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 48 H 0.06 2.02 7.25 -2.39 -0.02 2.00 16 49 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.10 2.34 8.05 -2.39 -0.02 2.32 16 51 H 0.10 2.62 6.37 -2.39 -0.02 2.61 16 52 H 0.09 2.75 6.38 -2.38 -0.02 2.73 16 53 H 0.10 2.49 7.60 -2.39 -0.02 2.47 16 Total: -1.00 -64.91 401.84 1.91 -62.99 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.27 Total: 25.44 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.40 Total: -6.46 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -4.14 Total: -102.61 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.64 Total: -25.24 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.91 1.91 -62.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000212726.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.907 kcal (2) G-P(sol) polarization free energy of solvation -64.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds