Wall clock time and date at job start Tue Mar 31 2020 19:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47472 * 2 1 4 4 H 1.09001 * 109.47892 * 305.02507 * 3 2 1 5 5 O 1.42906 * 109.49121 * 65.04967 * 3 2 1 6 6 C 1.42905 * 114.09991 * 181.14815 * 5 3 2 7 7 C 1.53089 * 109.41316 * 298.84397 * 6 5 3 8 8 C 1.53317 * 109.19874 * 57.60904 * 7 6 5 9 9 C 1.53092 * 109.48488 * 184.99935 * 3 2 1 10 10 H 1.09008 * 109.51991 * 62.42960 * 9 3 2 11 11 C 1.50695 * 109.52102 * 302.30456 * 9 3 2 12 12 O 1.21275 * 120.00164 * 337.34210 * 11 9 3 13 13 N 1.34782 * 119.99822 * 157.34518 * 11 9 3 14 14 C 1.46886 * 120.49484 * 355.06633 * 13 11 9 15 15 C 1.53329 * 108.76535 * 235.58171 * 14 13 11 16 16 C 1.52667 * 109.21786 * 307.57394 * 15 14 13 17 17 C 1.53486 * 113.60966 * 285.94273 * 16 15 14 18 18 N 1.47668 * 85.98944 * 269.03484 * 17 16 15 19 19 C 1.36940 * 134.45652 * 155.67970 * 18 17 16 20 20 H 1.07995 * 119.99430 * 180.02562 * 19 18 17 21 21 C 1.38807 * 119.99976 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00079 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00090 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47221 * 59.99483 * 23 21 19 25 25 H 1.48500 * 109.47327 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46530 * 300.00162 * 23 21 19 27 27 C 1.47662 * 91.08264 * 335.67965 * 18 17 16 28 28 C 1.52799 * 113.12470 * 57.40952 * 16 15 14 29 29 C 1.46899 * 120.49465 * 175.04496 * 13 11 9 30 30 H 1.09003 * 109.47345 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47008 * 300.00045 * 1 2 3 32 32 H 1.08997 * 109.47079 * 59.99888 * 1 2 3 33 33 H 1.09007 * 109.46790 * 240.00087 * 2 1 3 34 34 H 1.08997 * 109.47079 * 120.00112 * 2 1 3 35 35 H 1.08997 * 109.47814 * 58.82397 * 6 5 3 36 36 H 1.08997 * 109.47683 * 178.84816 * 6 5 3 37 37 H 1.09000 * 109.51899 * 177.51399 * 7 6 5 38 38 H 1.08996 * 109.52684 * 297.63878 * 7 6 5 39 39 H 1.08995 * 109.62801 * 183.18329 * 8 7 6 40 40 H 1.09001 * 109.52850 * 62.86973 * 8 7 6 41 41 H 1.09004 * 109.58423 * 115.80555 * 14 13 11 42 42 H 1.08989 * 109.70865 * 355.44086 * 14 13 11 43 43 H 1.08998 * 109.51797 * 67.51237 * 15 14 13 44 44 H 1.08993 * 109.52403 * 187.63451 * 15 14 13 45 45 H 1.08998 * 113.78956 * 23.30728 * 17 16 15 46 46 H 1.09002 * 113.79075 * 154.76664 * 17 16 15 47 47 H 0.97003 * 120.00115 * 180.02562 * 22 21 19 48 48 H 1.09002 * 113.79066 * 270.04993 * 27 18 17 49 49 H 1.09001 * 113.89692 * 138.60246 * 27 18 17 50 50 H 1.09002 * 109.50148 * 182.68477 * 28 16 15 51 51 H 1.08992 * 109.56383 * 62.54513 * 28 16 15 52 52 H 1.08991 * 109.58600 * 244.19711 * 29 13 11 53 53 H 1.08998 * 109.58647 * 4.48234 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6052 1.9817 -0.8415 5 8 1.6632 2.0814 1.2214 6 6 2.0700 3.4482 1.3146 7 6 3.5969 3.5307 1.2416 8 6 4.0747 2.8880 -0.0658 9 6 3.5658 1.4445 -0.1258 10 1 3.8535 0.9961 -1.0768 11 6 4.1655 0.6516 1.0067 12 8 3.5368 0.4858 2.0305 13 7 5.4006 0.1267 0.8818 14 6 6.1284 0.2278 -0.3900 15 6 6.5284 -1.1815 -0.8428 16 6 7.2623 -1.8857 0.2957 17 6 8.6924 -1.3734 0.5150 18 7 9.1051 -2.4306 -0.4299 19 6 10.1777 -2.6071 -1.2628 20 1 10.2477 -3.4963 -1.8717 21 6 11.1742 -1.6429 -1.3251 22 7 11.0885 -0.5590 -0.5832 23 14 12.6369 -1.8834 -2.4617 24 1 12.1608 -1.9984 -3.8636 25 1 13.5525 -0.7202 -2.3432 26 1 13.3605 -3.1231 -2.0815 27 6 7.8978 -3.2208 -0.1166 28 6 6.4383 -1.9694 1.5798 29 6 6.0391 -0.5547 2.0158 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 1.6356 4.0137 0.4903 36 1 1.7280 3.8654 2.2617 37 1 3.9068 4.5754 1.2681 38 1 4.0314 3.0004 2.0889 39 1 5.1641 2.8923 -0.0991 40 1 3.6804 3.4492 -0.9130 41 1 7.0231 0.8349 -0.2518 42 1 5.4887 0.6861 -1.1441 43 1 5.6344 -1.7472 -1.1049 44 1 7.1836 -1.1128 -1.7111 45 1 8.8591 -0.3623 0.1437 46 1 9.0620 -1.5219 1.5297 47 1 11.7847 0.1151 -0.6271 48 1 8.0311 -3.9183 0.7104 49 1 7.4314 -3.6791 -0.9888 50 1 7.0331 -2.4379 2.3639 51 1 5.5413 -2.5618 1.3998 52 1 6.9275 -0.0020 2.3210 53 1 5.3393 -0.6107 2.8496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035718417.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:22 Heat of formation + Delta-G solvation = -51.938795 kcal Electronic energy + Delta-G solvation = -31665.919332 eV Core-core repulsion = 27731.160889 eV Total energy + Delta-G solvation = -3934.758442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96617 -40.76901 -39.08216 -36.91978 -34.94161 -34.79065 -34.28355 -32.37067 -31.77821 -30.79369 -28.59319 -26.77036 -26.27223 -25.77389 -24.68303 -24.17906 -23.05464 -22.21175 -21.90999 -20.15794 -18.82714 -18.56332 -17.97838 -17.38932 -16.84494 -16.77433 -16.62730 -16.19025 -16.05784 -15.64944 -15.41165 -15.18913 -15.06641 -14.80368 -14.51160 -14.18984 -14.09870 -14.07153 -13.68045 -13.54084 -13.38738 -13.19566 -13.06079 -12.87668 -12.75279 -12.69739 -12.52272 -12.47138 -12.21332 -12.12852 -12.03995 -11.75707 -11.65862 -11.60119 -11.44288 -11.21226 -11.07185 -10.97003 -10.80357 -10.46720 -10.19669 -9.49803 -8.86014 -7.86685 -5.18936 1.46182 1.48653 1.54735 1.75844 2.07642 2.49464 2.97246 3.33385 3.42625 3.49066 3.61135 3.71191 3.79974 3.85700 3.98892 4.04594 4.14688 4.20883 4.27278 4.31004 4.33657 4.38799 4.44916 4.51230 4.57712 4.66923 4.70328 4.73712 4.79995 4.83576 4.85077 4.87917 4.88545 4.93207 4.95529 5.01883 5.06218 5.09382 5.13950 5.18572 5.21117 5.27832 5.28450 5.37791 5.41252 5.48269 5.58953 5.61329 5.77601 5.98790 6.49066 6.55013 6.96558 7.33445 7.64908 8.62499 9.29440 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019626 B = 0.002929 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.340536 B = 9557.724483 C = 9993.859092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.111 3.889 4 H 0.087 0.913 5 O -0.382 6.382 6 C 0.059 3.941 7 C -0.157 4.157 8 C -0.110 4.110 9 C -0.144 4.144 10 H 0.121 0.879 11 C 0.522 3.478 12 O -0.558 6.558 13 N -0.607 5.607 14 C 0.115 3.885 15 C -0.091 4.091 16 C -0.083 4.083 17 C 0.176 3.824 18 N -0.637 5.637 19 C -0.233 4.233 20 H 0.079 0.921 21 C -0.063 4.063 22 N -0.950 5.950 23 Si 0.973 3.027 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.283 1.283 27 C 0.123 3.877 28 C -0.105 4.105 29 C 0.119 3.881 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.112 0.888 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.003 0.997 47 H 0.247 0.753 48 H 0.039 0.961 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.058 0.942 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.486 7.332 -1.139 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.053 3.947 4 H 0.104 0.896 5 O -0.301 6.301 6 C -0.017 4.017 7 C -0.194 4.194 8 C -0.147 4.147 9 C -0.165 4.165 10 H 0.139 0.861 11 C 0.311 3.689 12 O -0.436 6.436 13 N -0.340 5.340 14 C -0.007 4.007 15 C -0.129 4.129 16 C -0.084 4.084 17 C 0.051 3.949 18 N -0.363 5.363 19 C -0.362 4.362 20 H 0.097 0.903 21 C -0.256 4.256 22 N -0.599 5.599 23 Si 0.802 3.198 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.209 1.209 27 C -0.002 4.002 28 C -0.144 4.144 29 C -0.004 4.004 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.122 0.878 41 H 0.076 0.924 42 H 0.130 0.870 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.021 0.979 47 H 0.056 0.944 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.091 0.909 51 H 0.091 0.909 52 H 0.076 0.924 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.624 7.217 -0.598 21.858 hybrid contribution 1.967 -0.213 -0.192 1.987 sum -18.657 7.004 -0.791 19.944 Atomic orbital electron populations 1.21622 0.94439 1.01741 1.01953 1.21658 0.97503 0.94603 1.02467 1.22014 0.90339 0.94655 0.87738 0.89575 1.88033 1.77920 1.25118 1.39001 1.22627 0.93383 0.83037 1.02663 1.22195 0.97570 1.02020 0.97643 1.21612 1.01533 0.92497 0.99098 1.22241 0.98103 0.97572 0.98576 0.86116 1.20808 0.80206 0.78684 0.89206 1.90686 1.60640 1.60282 1.31952 1.48190 1.16430 1.56224 1.13194 1.21795 0.96720 0.97156 0.85036 1.21412 0.99364 0.95417 0.96743 1.22161 0.94114 0.96433 0.95713 1.22111 0.88817 0.93599 0.90382 1.46338 1.22698 1.21742 1.45504 1.19348 0.98118 1.03647 1.15075 0.90326 1.25515 1.01294 0.96986 1.01825 1.69991 1.35282 1.10472 1.44151 0.85235 0.79167 0.76477 0.78941 1.20045 1.22121 1.20936 1.22767 0.86139 0.93900 0.97428 1.21710 0.99633 0.96427 0.96605 1.21428 0.97079 0.92659 0.89214 0.92463 0.93516 0.91496 0.89586 0.92999 0.91263 0.89148 0.89066 0.94082 0.91115 0.87805 0.92412 0.87010 0.90347 0.91906 0.93729 0.97877 0.94411 0.94334 0.92851 0.90883 0.90877 0.92390 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.81 71.98 0.71 -1.75 16 2 C -0.12 -2.53 5.22 30.59 0.16 -2.37 16 3 C 0.11 2.14 2.22 30.62 0.07 2.20 16 4 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 5 O -0.38 -9.21 8.56 -129.59 -1.11 -10.32 16 6 C 0.06 1.08 6.84 72.01 0.49 1.57 16 7 C -0.16 -2.93 5.84 30.73 0.18 -2.75 16 8 C -0.11 -1.81 5.51 30.76 0.17 -1.64 16 9 C -0.14 -2.77 1.76 -11.45 -0.02 -2.79 16 10 H 0.12 1.82 6.18 -2.38 -0.01 1.80 16 11 C 0.52 14.02 5.17 87.65 0.45 14.47 16 12 O -0.56 -18.88 12.76 16.38 0.21 -18.67 16 13 N -0.61 -16.47 2.94 -818.58 -2.41 -18.88 16 14 C 0.12 2.98 5.95 86.42 0.51 3.49 16 15 C -0.09 -2.74 5.20 30.59 0.16 -2.58 16 16 C -0.08 -2.88 0.78 -51.99 -0.04 -2.92 16 17 C 0.18 8.09 6.32 86.31 0.55 8.64 16 18 N -0.64 -31.93 3.53 -722.61 -2.55 -34.49 16 19 C -0.23 -12.94 10.70 84.03 0.90 -12.04 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 22 N -0.95 -56.20 11.39 21.65 0.25 -55.96 16 23 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 27 C 0.12 4.81 8.07 86.32 0.70 5.51 16 28 C -0.10 -3.08 5.26 30.64 0.16 -2.92 16 29 C 0.12 3.49 6.32 86.41 0.55 4.04 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.95 7.82 -2.39 -0.02 0.93 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.05 1.41 6.34 -2.39 -0.02 1.40 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.04 1.05 7.12 -2.39 -0.02 1.03 16 39 H 0.07 1.26 7.91 -2.39 -0.02 1.24 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.73 7.52 -2.38 -0.02 1.71 16 42 H 0.11 2.14 5.39 -2.39 -0.01 2.12 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.06 2.23 8.01 -2.39 -0.02 2.21 16 45 H 0.04 2.28 6.47 -2.39 -0.02 2.26 16 46 H 0.00 0.17 8.07 -2.39 -0.02 0.15 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.04 1.48 8.09 -2.39 -0.02 1.46 16 49 H 0.05 1.96 8.09 -2.39 -0.02 1.94 16 50 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 51 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 52 H 0.06 1.80 8.09 -2.39 -0.02 1.78 16 53 H 0.08 2.52 6.98 -2.39 -0.02 2.50 16 Total: -1.00 -70.52 394.32 3.44 -67.08 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.87 Total: 18.90 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 6.16 Total: 5.10 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -4.71 Total: -109.32 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.90 Total: -28.99 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -70.52 3.44 -67.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035718417.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.137 kcal (2) G-P(sol) polarization free energy of solvation -70.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds