Wall clock time and date at job start Tue Mar 31 2020 19:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46947 * 2 1 4 4 H 1.08992 * 109.49282 * 54.97085 * 3 2 1 5 5 C 1.53089 * 109.47879 * 175.00324 * 3 2 1 6 6 C 1.53178 * 109.16365 * 177.58956 * 5 3 2 7 7 H 1.09000 * 109.54248 * 62.88025 * 6 5 3 8 8 C 1.50699 * 109.54577 * 183.15126 * 6 5 3 9 9 O 1.21274 * 119.99787 * 21.60701 * 8 6 5 10 10 N 1.34773 * 119.99704 * 201.60973 * 8 6 5 11 11 C 1.46886 * 120.46050 * 183.98088 * 10 8 6 12 12 C 1.52859 * 109.01606 * 235.48408 * 11 10 8 13 13 C 1.52670 * 109.18010 * 307.82144 * 12 11 10 14 14 C 1.53482 * 113.62536 * 188.99406 * 13 12 11 15 15 N 1.47677 * 85.98607 * 137.70706 * 14 13 12 16 16 C 1.36928 * 134.45656 * 155.65205 * 15 14 13 17 17 H 1.08000 * 120.00082 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00286 * 0.03969 * 16 15 14 19 19 N 1.31617 * 119.99821 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00353 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46931 * 60.00302 * 20 18 16 22 22 H 1.48494 * 109.46990 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47226 * 300.00375 * 20 18 16 24 24 C 1.47669 * 91.08549 * 335.67804 * 15 14 13 25 25 C 1.52672 * 113.18503 * 57.45628 * 13 12 11 26 26 C 1.46880 * 120.46954 * 4.25880 * 10 8 6 27 27 C 1.53183 * 109.03410 * 303.01689 * 6 5 3 28 28 C 1.53089 * 109.16271 * 56.97971 * 27 6 5 29 29 O 1.42905 * 109.42809 * 302.38588 * 28 27 6 30 30 H 1.09000 * 109.47476 * 60.00099 * 1 2 3 31 31 H 1.08995 * 109.46867 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47052 * 300.00151 * 1 2 3 33 33 H 1.09000 * 109.47052 * 239.99849 * 2 1 3 34 34 H 1.09004 * 109.47122 * 119.99256 * 2 1 3 35 35 H 1.08998 * 109.52648 * 57.67866 * 5 3 2 36 36 H 1.09005 * 109.51969 * 297.49207 * 5 3 2 37 37 H 1.08999 * 109.59333 * 355.31058 * 11 10 8 38 38 H 1.09003 * 109.59114 * 115.74657 * 11 10 8 39 39 H 1.09006 * 109.61012 * 187.83874 * 12 11 10 40 40 H 1.09004 * 109.44698 * 67.70210 * 12 11 10 41 41 H 1.08994 * 113.79038 * 251.97259 * 14 13 12 42 42 H 1.08995 * 113.78934 * 23.44079 * 14 13 12 43 43 H 0.97008 * 120.00337 * 179.97438 * 19 18 16 44 44 H 1.09000 * 113.79413 * 270.05065 * 24 15 14 45 45 H 1.08999 * 113.78923 * 138.57718 * 24 15 14 46 46 H 1.08996 * 109.53287 * 182.51526 * 25 13 12 47 47 H 1.09005 * 109.52953 * 62.30071 * 25 13 12 48 48 H 1.09009 * 109.58749 * 244.25751 * 26 10 8 49 49 H 1.08993 * 109.58610 * 4.68618 * 26 10 8 50 50 H 1.08994 * 109.52267 * 297.07196 * 27 6 5 51 51 H 1.09000 * 109.51962 * 176.88758 * 27 6 5 52 52 H 1.08999 * 109.48109 * 62.37471 * 28 27 6 53 53 H 1.09000 * 109.48210 * 182.39253 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9820 0.8413 5 6 3.5657 1.4446 0.1257 6 6 4.0733 2.8885 0.0644 7 1 3.6791 3.4499 0.9115 8 6 5.5796 2.8958 0.1096 9 8 6.2005 1.9031 -0.2064 10 7 6.2367 4.0054 0.5012 11 6 7.7043 4.0531 0.4662 12 6 8.2241 4.4187 1.8564 13 6 7.5213 5.6858 2.3375 14 6 8.1187 6.2694 3.6252 15 7 7.9692 7.5865 2.9744 16 6 7.8433 8.8720 3.4290 17 1 7.7449 9.6861 2.7262 18 6 7.8423 9.1289 4.7931 19 7 7.9630 8.1369 5.6497 20 14 7.6698 10.8825 5.4133 21 1 6.3817 11.4502 4.9405 22 1 7.6982 10.8875 6.8979 23 1 8.7929 11.7039 4.8944 24 6 8.0093 6.9617 1.6370 25 6 6.0008 5.5528 2.3740 26 6 5.4955 5.1818 0.9748 27 6 3.5968 3.5306 -1.2422 28 6 2.0699 3.4479 -1.3152 29 8 1.6629 2.0812 -1.2218 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5137 0.8901 35 1 3.9995 0.8709 -0.6933 36 1 3.8534 0.9975 1.0773 37 1 8.0950 3.0776 0.1767 38 1 8.0285 4.8066 -0.2517 39 1 9.2992 4.5931 1.8109 40 1 8.0165 3.6020 2.5478 41 1 7.4855 6.1380 4.5026 42 1 9.1551 5.9802 3.7995 43 1 7.9627 8.3164 6.6030 44 1 9.0131 6.8782 1.2205 45 1 7.2889 7.3804 0.9344 46 1 5.5594 6.5007 2.6815 47 1 5.7202 4.7724 3.0815 48 1 5.6607 6.0164 0.2934 49 1 4.4316 4.9494 1.0201 50 1 4.0312 2.9990 -2.0888 51 1 3.9068 4.5752 -1.2690 52 1 1.6354 4.0136 -0.4910 53 1 1.7281 3.8651 -2.2624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035832786.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:15 Heat of formation + Delta-G solvation = -60.816410 kcal Electronic energy + Delta-G solvation = -30714.530820 eV Core-core repulsion = 26779.387416 eV Total energy + Delta-G solvation = -3935.143405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.86588 -40.70676 -39.58945 -37.08282 -35.09729 -34.73178 -34.32240 -32.28823 -31.83132 -30.74112 -28.78009 -27.13833 -26.66756 -25.02652 -24.67690 -24.26177 -23.19521 -22.30824 -21.55488 -20.31045 -18.95767 -18.68483 -17.96778 -17.37841 -17.20559 -16.85540 -16.65976 -16.20376 -16.07135 -15.66544 -15.49211 -15.15997 -15.04888 -14.82451 -14.56026 -14.48876 -14.21331 -14.11119 -13.83234 -13.66035 -13.52847 -13.11275 -12.89561 -12.81723 -12.72294 -12.68597 -12.60464 -12.33295 -12.22827 -12.14085 -12.08925 -11.77594 -11.68719 -11.64481 -11.55408 -11.24971 -11.12646 -10.98206 -10.84851 -10.78022 -10.30825 -9.60482 -8.87341 -7.87520 -5.20050 1.45729 1.48498 1.54599 1.57959 1.99559 2.49063 2.88218 3.32480 3.38155 3.44168 3.60302 3.62854 3.76996 3.83414 3.94422 4.04230 4.14036 4.15954 4.20572 4.32826 4.35317 4.37472 4.42527 4.46550 4.54003 4.63914 4.67954 4.71804 4.72971 4.78764 4.83421 4.86252 4.86523 4.90977 4.92803 5.05104 5.10508 5.12619 5.15556 5.16251 5.21553 5.22754 5.29360 5.33497 5.34669 5.48605 5.53885 5.60633 5.75477 5.97140 6.34817 6.42662 6.94871 7.15225 7.64544 8.61574 9.29027 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.002534 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.559194 B =11046.049637 C =11699.735694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.093 3.907 4 H 0.071 0.929 5 C -0.128 4.128 6 C -0.108 4.108 7 H 0.114 0.886 8 C 0.519 3.481 9 O -0.584 6.584 10 N -0.603 5.603 11 C 0.119 3.881 12 C -0.109 4.109 13 C -0.081 4.081 14 C 0.167 3.833 15 N -0.637 5.637 16 C -0.229 4.229 17 H 0.083 0.917 18 C -0.069 4.069 19 N -0.955 5.955 20 Si 0.975 3.025 21 H -0.273 1.273 22 H -0.297 1.297 23 H -0.281 1.281 24 C 0.130 3.870 25 C -0.094 4.094 26 C 0.115 3.885 27 C -0.139 4.139 28 C 0.062 3.938 29 O -0.393 6.393 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.037 0.963 42 H 0.007 0.993 43 H 0.246 0.754 44 H 0.040 0.960 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.084 0.916 49 H 0.111 0.889 50 H 0.061 0.939 51 H 0.095 0.905 52 H 0.069 0.931 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.871 -12.608 -13.967 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C 0.036 3.964 4 H 0.089 0.911 5 C -0.166 4.166 6 C -0.129 4.129 7 H 0.132 0.868 8 C 0.308 3.692 9 O -0.465 6.465 10 N -0.334 5.334 11 C -0.004 4.004 12 C -0.148 4.148 13 C -0.082 4.082 14 C 0.042 3.958 15 N -0.363 5.363 16 C -0.357 4.357 17 H 0.101 0.899 18 C -0.261 4.261 19 N -0.604 5.604 20 Si 0.803 3.197 21 H -0.199 1.199 22 H -0.224 1.224 23 H -0.207 1.207 24 C 0.005 3.995 25 C -0.132 4.132 26 C -0.007 4.007 27 C -0.177 4.177 28 C -0.014 4.014 29 O -0.313 6.313 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.025 0.975 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.102 0.898 49 H 0.129 0.871 50 H 0.080 0.920 51 H 0.114 0.886 52 H 0.087 0.913 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.664 -12.946 -14.063 23.496 hybrid contribution 1.020 1.199 1.222 1.993 sum -12.644 -11.747 -12.841 21.511 Atomic orbital electron populations 1.21686 0.94589 1.02013 1.02049 1.21572 0.97159 0.93838 1.02953 1.22208 0.92089 0.94866 0.87248 0.91112 1.22032 0.96542 0.94895 1.03124 1.21455 0.90338 0.99397 1.01666 0.86808 1.21005 0.90920 0.81673 0.75576 1.90647 1.70342 1.34332 1.51150 1.48189 1.07135 1.14600 1.63509 1.21441 0.79451 1.02589 0.96876 1.21644 1.00148 0.96453 0.96535 1.22111 0.96116 0.93440 0.96564 1.22160 0.95510 0.83460 0.94712 1.46348 1.84724 1.02254 1.02997 1.19367 1.41394 0.83926 0.91053 0.89932 1.25578 1.03317 1.01165 0.96077 1.70010 1.58152 1.31344 1.00894 0.85207 0.78297 0.79706 0.76471 1.19911 1.22384 1.20712 1.22755 0.97863 0.90404 0.88478 1.21425 0.93242 1.01452 0.97102 1.21941 0.96978 0.87337 0.94462 1.22142 0.98085 1.02196 0.95270 1.22704 0.92091 0.82682 1.03935 1.87925 1.78567 1.25680 1.39100 0.92839 0.92003 0.92356 0.91927 0.89662 0.91970 0.90840 0.90031 0.90141 0.90438 0.92326 0.94421 0.97529 0.94478 0.94240 0.92314 0.91569 0.92126 0.89791 0.87102 0.91989 0.88606 0.91281 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.81 71.98 0.71 -1.17 16 2 C -0.12 -1.71 5.64 30.60 0.17 -1.54 16 3 C 0.09 1.50 2.64 30.63 0.08 1.58 16 4 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 5 C -0.13 -2.45 4.25 30.68 0.13 -2.32 16 6 C -0.11 -1.96 1.76 -11.42 -0.02 -1.98 16 7 H 0.11 1.67 6.27 -2.39 -0.01 1.66 16 8 C 0.52 13.03 6.84 87.66 0.60 13.63 16 9 O -0.58 -19.15 15.39 -3.01 -0.05 -19.19 16 10 N -0.60 -14.25 2.95 -819.51 -2.42 -16.66 16 11 C 0.12 2.98 6.29 86.26 0.54 3.52 16 12 C -0.11 -3.10 5.24 30.44 0.16 -2.94 16 13 C -0.08 -2.74 0.77 -52.03 -0.04 -2.78 16 14 C 0.17 7.78 6.64 86.31 0.57 8.36 16 15 N -0.64 -31.50 3.53 -722.62 -2.55 -34.05 16 16 C -0.23 -12.53 10.70 84.03 0.90 -11.63 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 19 N -0.95 -57.37 11.39 21.65 0.25 -57.13 16 20 Si 0.97 45.18 29.55 68.60 2.03 47.20 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 C 0.13 4.80 7.73 86.32 0.67 5.47 16 25 C -0.09 -2.76 5.21 30.60 0.16 -2.60 16 26 C 0.11 2.40 5.80 86.42 0.50 2.90 16 27 C -0.14 -2.10 5.32 30.69 0.16 -1.93 16 28 C 0.06 0.81 6.84 72.01 0.49 1.30 16 29 O -0.39 -7.00 9.95 -148.98 -1.48 -8.48 16 30 H 0.05 0.78 7.82 -2.39 -0.02 0.76 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.06 1.47 7.78 -2.39 -0.02 1.45 16 36 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.08 2.19 6.97 -2.39 -0.02 2.18 16 38 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 39 H 0.08 2.17 8.12 -2.38 -0.02 2.15 16 40 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.04 1.99 7.12 -2.39 -0.02 1.97 16 42 H 0.01 0.34 8.09 -2.39 -0.02 0.32 16 43 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 44 H 0.04 1.43 8.07 -2.39 -0.02 1.41 16 45 H 0.06 1.97 7.41 -2.39 -0.02 1.95 16 46 H 0.07 2.28 8.01 -2.39 -0.02 2.27 16 47 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 48 H 0.08 1.63 7.49 -2.38 -0.02 1.61 16 49 H 0.11 1.70 5.30 -2.39 -0.01 1.68 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.10 1.16 7.71 -2.39 -0.02 1.14 16 52 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -70.83 401.01 2.90 -67.93 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.86 Total: 15.94 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.25 Total: 4.44 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -4.72 Total: -107.84 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.53 Total: -27.67 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.83 2.90 -67.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035832786.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.115 kcal (2) G-P(sol) polarization free energy of solvation -70.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds