Wall clock time and date at job start Tue Mar 31 2020 19:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 H 1.08999 * 109.48248 * 55.02703 * 3 2 1 5 5 C 1.53091 * 109.47907 * 175.05455 * 3 2 1 6 6 C 1.53182 * 109.16390 * 177.59121 * 5 3 2 7 7 H 1.09003 * 109.54317 * 62.88820 * 6 5 3 8 8 C 1.50700 * 109.61714 * 183.11298 * 6 5 3 9 9 O 1.21275 * 120.00007 * 23.02499 * 8 6 5 10 10 N 1.34775 * 119.99608 * 203.02697 * 8 6 5 11 11 C 1.46939 * 120.44746 * 4.67667 * 10 8 6 12 12 C 1.54065 * 108.29576 * 125.71216 * 11 10 8 13 13 H 1.09003 * 110.52518 * 172.27722 * 12 11 10 14 14 C 1.53370 * 109.34334 * 294.25410 * 12 11 10 15 15 C 1.53012 * 109.25525 * 60.53621 * 14 12 11 16 16 C 1.54192 * 110.61649 * 59.71501 * 15 14 12 17 17 C 1.53365 * 109.08730 * 301.01931 * 16 15 14 18 18 H 1.08994 * 110.59724 * 176.62874 * 17 16 15 19 19 C 1.46944 * 120.43978 * 184.95430 * 10 8 6 20 20 N 1.47564 * 108.50008 * 55.14349 * 17 16 15 21 21 C 1.36936 * 121.61368 * 122.02548 * 20 17 16 22 22 H 1.08006 * 119.99998 * 147.81948 * 21 20 17 23 23 C 1.38806 * 120.00063 * 327.82009 * 21 20 17 24 24 N 1.31620 * 119.99777 * 349.46888 * 23 21 20 25 25 Si 1.86802 * 120.00325 * 169.46505 * 23 21 20 26 26 H 1.48501 * 109.47078 * 90.00074 * 25 23 21 27 27 H 1.48498 * 109.46993 * 210.00162 * 25 23 21 28 28 H 1.48497 * 109.46824 * 330.00156 * 25 23 21 29 29 C 1.53177 * 109.03454 * 303.02322 * 6 5 3 30 30 C 1.53090 * 109.16596 * 56.98125 * 29 6 5 31 31 O 1.42900 * 109.48313 * 295.00207 * 3 2 1 32 32 H 1.08991 * 109.47544 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47086 * 300.00379 * 1 2 3 34 34 H 1.09000 * 109.47262 * 59.99759 * 1 2 3 35 35 H 1.08997 * 109.46827 * 240.00000 * 2 1 3 36 36 H 1.08997 * 109.46859 * 120.00573 * 2 1 3 37 37 H 1.09007 * 109.52180 * 57.69176 * 5 3 2 38 38 H 1.08997 * 109.52733 * 297.49850 * 5 3 2 39 39 H 1.09003 * 109.62962 * 245.47847 * 11 10 8 40 40 H 1.09005 * 109.62320 * 6.04401 * 11 10 8 41 41 H 1.08998 * 109.50669 * 180.47072 * 14 12 11 42 42 H 1.08996 * 109.50538 * 300.60151 * 14 12 11 43 43 H 1.08999 * 109.41633 * 180.67720 * 15 14 12 44 44 H 1.09001 * 109.42094 * 300.54952 * 15 14 12 45 45 H 1.09001 * 110.81309 * 180.38350 * 16 15 14 46 46 H 1.09010 * 108.37525 * 60.17622 * 16 15 14 47 47 H 1.09001 * 109.63015 * 353.96398 * 19 10 8 48 48 H 1.09007 * 109.63076 * 114.53697 * 19 10 8 49 49 H 0.97004 * 119.99797 * 180.02562 * 24 23 21 50 50 H 1.09010 * 109.52025 * 176.88159 * 29 6 5 51 51 H 1.08993 * 109.52797 * 297.00907 * 29 6 5 52 52 H 1.09002 * 109.48075 * 62.36969 * 30 29 6 53 53 H 1.08998 * 109.48225 * 182.39485 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9816 0.8420 5 6 3.5659 1.4445 0.1244 6 6 4.0735 2.8884 0.0631 7 1 3.6801 3.4495 0.9108 8 6 5.5798 2.8975 0.1079 9 8 6.2025 1.9142 -0.2328 10 7 6.2348 3.9984 0.5267 11 6 5.4912 5.1579 1.0382 12 6 6.0357 5.5028 2.4375 13 1 5.6056 6.4384 2.7951 14 6 5.7140 4.3566 3.4045 15 6 6.3825 3.0735 2.9065 16 6 7.9115 3.2547 2.8242 17 6 8.2287 4.4131 1.8705 18 1 9.3018 4.6016 1.8397 19 6 7.7021 4.0575 0.4722 20 7 7.5037 5.6123 2.3331 21 6 8.1613 6.7709 2.6498 22 1 7.6847 7.7255 2.4820 23 6 9.4403 6.7186 3.1866 24 7 9.9407 5.5679 3.5838 25 14 10.4515 8.2813 3.3450 26 1 10.1913 8.9073 4.6662 27 1 11.8946 7.9508 3.2294 28 1 10.0723 9.2277 2.2654 29 6 3.5958 3.5309 -1.2427 30 6 2.0688 3.4484 -1.3143 31 8 1.6621 2.0816 -1.2209 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 3.9989 0.8711 -0.6953 38 1 3.8544 0.9970 1.0755 39 1 5.6304 6.0066 0.3686 40 1 4.4314 4.9119 1.1065 41 1 6.0908 4.6016 4.3975 42 1 4.6348 4.2108 3.4498 43 1 6.1456 2.2544 3.5855 44 1 6.0128 2.8359 1.9090 45 1 8.3905 2.3445 2.4632 46 1 8.2836 3.4916 3.8210 47 1 8.0966 3.0880 0.1680 48 1 8.0115 4.8218 -0.2409 49 1 10.8344 5.5313 3.9592 50 1 3.9057 4.5757 -1.2693 51 1 4.0303 3.0004 -2.0900 52 1 1.6352 4.0138 -0.4894 53 1 1.7262 3.8659 -2.2610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039967347.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:31 Heat of formation + Delta-G solvation = -64.314064 kcal Electronic energy + Delta-G solvation = -32356.366837 eV Core-core repulsion = 28421.071762 eV Total energy + Delta-G solvation = -3935.295074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.27304 -40.39910 -39.01647 -35.73101 -34.96397 -34.68214 -34.34144 -33.30283 -32.18105 -30.72914 -28.70689 -27.43687 -26.55793 -25.33454 -24.63146 -23.30381 -22.95575 -22.43193 -21.58618 -20.35738 -19.87740 -18.67178 -17.83584 -17.34721 -17.12827 -16.71268 -16.56977 -16.11786 -15.75568 -15.51691 -15.28032 -15.15215 -14.86472 -14.59713 -14.53065 -14.52117 -14.24880 -14.01959 -13.78645 -13.61517 -13.43849 -13.10968 -13.00254 -12.79033 -12.70457 -12.57852 -12.44736 -12.23852 -12.14765 -12.04273 -11.92889 -11.75389 -11.72982 -11.63156 -11.57150 -11.32215 -11.14981 -11.09425 -10.77745 -10.47562 -10.27037 -9.44434 -8.40743 -7.80209 -5.33331 1.47359 1.49992 1.57428 1.61150 2.04625 2.52109 2.90028 3.33739 3.43502 3.51648 3.63351 3.77516 3.95819 4.05513 4.12675 4.18749 4.21965 4.24825 4.27403 4.30796 4.37000 4.43741 4.47448 4.55220 4.55891 4.62603 4.74175 4.76802 4.79817 4.82752 4.85558 4.88639 4.92708 4.95026 5.04759 5.09740 5.14540 5.15873 5.17677 5.22942 5.27561 5.33894 5.36776 5.41739 5.50884 5.56222 5.68007 5.72762 5.87294 6.36896 6.44734 6.54696 7.17136 7.20510 7.84549 8.44902 9.22154 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.003164 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.815029 B = 8846.281716 C = 9048.640470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.096 3.904 4 H 0.076 0.924 5 C -0.128 4.128 6 C -0.104 4.104 7 H 0.117 0.883 8 C 0.517 3.483 9 O -0.589 6.589 10 N -0.589 5.589 11 C 0.100 3.900 12 C 0.142 3.858 13 H 0.087 0.913 14 C -0.115 4.115 15 C -0.133 4.133 16 C -0.105 4.105 17 C 0.182 3.818 18 H 0.075 0.925 19 C 0.104 3.896 20 N -0.594 5.594 21 C -0.254 4.254 22 H 0.071 0.929 23 C -0.045 4.045 24 N -0.925 5.925 25 Si 0.963 3.037 26 H -0.288 1.288 27 H -0.300 1.300 28 H -0.270 1.270 29 C -0.139 4.139 30 C 0.065 3.935 31 O -0.393 6.393 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.031 0.969 42 H 0.083 0.917 43 H 0.036 0.964 44 H 0.087 0.913 45 H 0.031 0.969 46 H 0.033 0.967 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.246 0.754 50 H 0.093 0.907 51 H 0.057 0.943 52 H 0.074 0.926 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.776 -4.555 -7.073 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C 0.039 3.961 4 H 0.094 0.906 5 C -0.167 4.167 6 C -0.125 4.125 7 H 0.135 0.865 8 C 0.308 3.692 9 O -0.471 6.471 10 N -0.320 5.320 11 C -0.023 4.023 12 C 0.035 3.965 13 H 0.105 0.895 14 C -0.154 4.154 15 C -0.171 4.171 16 C -0.144 4.144 17 C 0.075 3.925 18 H 0.092 0.908 19 C -0.021 4.021 20 N -0.315 5.315 21 C -0.384 4.384 22 H 0.088 0.912 23 C -0.241 4.241 24 N -0.571 5.571 25 Si 0.792 3.208 26 H -0.215 1.215 27 H -0.227 1.227 28 H -0.195 1.195 29 C -0.178 4.178 30 C -0.011 4.011 31 O -0.312 6.312 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.134 0.866 41 H 0.050 0.950 42 H 0.102 0.898 43 H 0.055 0.945 44 H 0.104 0.896 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.055 0.945 50 H 0.111 0.889 51 H 0.076 0.924 52 H 0.092 0.908 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.382 -5.125 -7.328 21.346 hybrid contribution 2.025 0.713 0.743 2.272 sum -17.357 -4.413 -6.586 19.082 Atomic orbital electron populations 1.21679 0.94349 1.02013 1.02162 1.21573 0.97330 0.93844 1.02856 1.22188 0.91658 0.94906 0.87386 0.90644 1.22046 0.96902 0.94736 1.02973 1.21470 0.89716 0.99547 1.01790 0.86515 1.20924 0.91210 0.81688 0.75385 1.90653 1.70354 1.34782 1.51262 1.48180 1.06726 1.15958 1.61162 1.22599 0.96432 0.87578 0.95717 1.21591 0.84813 0.97124 0.92965 0.89533 1.21861 0.99620 0.95505 0.98375 1.22209 0.95499 0.97047 1.02338 1.21829 0.96016 0.96845 0.99734 1.20834 0.96979 0.85888 0.88824 0.90751 1.22120 0.80448 1.00410 0.99128 1.44499 1.01167 1.09811 1.76051 1.19416 0.98659 0.86147 1.34199 0.91178 1.25840 1.00866 0.98895 0.98498 1.70095 1.16538 1.25250 1.45199 0.85351 0.77516 0.80125 0.77810 1.21544 1.22696 1.19483 1.22143 0.98483 1.02007 0.95123 1.22695 0.91558 0.82726 1.04114 1.87913 1.78390 1.25694 1.39207 0.92062 0.92132 0.92773 0.92138 0.89748 0.92287 0.90979 0.90793 0.86622 0.95044 0.89846 0.94548 0.89568 0.95060 0.94852 0.91454 0.92515 0.94472 0.88864 0.92418 0.90778 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.81 71.98 0.71 -1.27 16 2 C -0.12 -1.91 5.64 30.59 0.17 -1.74 16 3 C 0.10 1.70 2.64 30.62 0.08 1.78 16 4 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 5 C -0.13 -2.88 4.28 30.69 0.13 -2.75 16 6 C -0.10 -2.31 1.80 -11.42 -0.02 -2.33 16 7 H 0.12 2.06 6.14 -2.39 -0.01 2.04 16 8 C 0.52 16.35 4.19 87.66 0.37 16.72 16 9 O -0.59 -23.54 15.39 -3.01 -0.05 -23.58 16 10 N -0.59 -19.23 1.64 -816.32 -1.33 -20.57 16 11 C 0.10 2.75 5.65 86.66 0.49 3.24 16 12 C 0.14 4.98 3.58 45.27 0.16 5.14 16 13 H 0.09 2.88 8.01 -2.39 -0.02 2.86 16 14 C -0.11 -3.91 5.64 30.72 0.17 -3.74 16 15 C -0.13 -4.98 5.58 31.00 0.17 -4.81 16 16 C -0.11 -4.77 5.62 31.12 0.17 -4.59 16 17 C 0.18 8.43 2.59 45.11 0.12 8.55 16 18 H 0.07 4.06 5.96 -2.39 -0.01 4.04 16 19 C 0.10 4.14 5.89 86.50 0.51 4.65 16 20 N -0.59 -27.08 2.52 -644.78 -1.63 -28.71 16 21 C -0.25 -12.93 9.71 84.03 0.82 -12.11 16 22 H 0.07 3.43 7.85 -2.91 -0.02 3.41 16 23 C -0.04 -2.40 5.12 84.86 0.43 -1.96 16 24 N -0.93 -52.60 10.65 21.65 0.23 -52.37 16 25 Si 0.96 43.48 29.57 68.60 2.03 45.50 16 26 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 C -0.14 -2.57 5.40 30.68 0.17 -2.40 16 30 C 0.07 0.94 6.84 72.01 0.49 1.44 16 31 O -0.39 -7.54 9.94 -148.98 -1.48 -9.02 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.05 0.83 7.82 -2.39 -0.02 0.81 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.62 7.78 -2.38 -0.02 1.60 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.12 2.20 5.38 -2.38 -0.01 2.19 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.09 3.07 2.63 -2.40 -0.01 3.06 16 45 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.03 1.73 7.82 -2.38 -0.02 1.71 16 47 H 0.07 2.83 6.98 -2.39 -0.02 2.82 16 48 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 49 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 50 H 0.09 1.48 7.96 -2.38 -0.02 1.46 16 51 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 53 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -66.12 385.80 3.80 -62.32 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.88 Total: 22.61 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.15 Total: 3.81 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -2.73 Total: -101.65 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.53 Total: -32.60 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.12 3.80 -62.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039967347.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.990 kcal (2) G-P(sol) polarization free energy of solvation -66.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds