Wall clock time and date at job start Tue Mar 31 2020 19:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47029 * 2 1 4 4 H 1.08994 * 110.43821 * 53.45390 * 3 2 1 5 5 C 1.54811 * 110.48507 * 290.76866 * 3 2 1 6 6 C 1.54997 * 102.09447 * 220.44174 * 5 3 2 7 7 O 1.44379 * 103.49091 * 37.02435 * 6 5 3 8 8 C 1.43751 * 106.97462 * 319.94286 * 7 6 5 9 9 H 1.09000 * 110.00257 * 267.01966 * 8 7 6 10 10 C 1.50704 * 109.88016 * 145.93417 * 8 7 6 11 11 O 1.21279 * 119.99801 * 342.78494 * 10 8 7 12 12 N 1.34770 * 119.99926 * 162.78475 * 10 8 7 13 13 C 1.47091 * 125.62677 * 4.05049 * 12 10 8 14 14 C 1.54465 * 107.29835 * 180.97941 * 13 12 10 15 15 C 1.54359 * 102.86359 * 21.47387 * 14 13 12 16 16 C 1.47584 * 125.62866 * 183.74211 * 12 10 8 17 17 C 1.52066 * 110.60520 * 207.23559 * 15 14 13 18 18 C 1.53200 * 109.67748 * 295.83225 * 17 15 14 19 19 C 1.53193 * 109.27349 * 300.04666 * 18 17 15 20 20 N 1.46936 * 108.94311 * 55.31102 * 19 18 17 21 21 C 1.36940 * 120.71711 * 125.77024 * 20 19 18 22 22 H 1.07996 * 119.99854 * 324.52513 * 21 20 19 23 23 C 1.38810 * 119.99948 * 144.52255 * 21 20 19 24 24 N 1.31621 * 119.99956 * 0.41796 * 23 21 20 25 25 Si 1.86801 * 119.99618 * 180.42057 * 23 21 20 26 26 H 1.48488 * 109.47279 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47086 * 120.00367 * 25 23 21 28 28 H 1.48501 * 109.46665 * 239.99550 * 25 23 21 29 29 C 1.47109 * 118.56747 * 305.74470 * 20 19 18 30 30 H 1.08997 * 109.47403 * 60.00605 * 1 2 3 31 31 H 1.09007 * 109.47104 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47166 * 299.99875 * 1 2 3 33 33 H 1.09003 * 109.47001 * 240.00073 * 2 1 3 34 34 H 1.09002 * 109.47679 * 120.00074 * 2 1 3 35 35 H 1.08993 * 110.91554 * 338.64020 * 5 3 2 36 36 H 1.09002 * 110.90989 * 102.24559 * 5 3 2 37 37 H 1.08996 * 110.62208 * 278.52849 * 6 5 3 38 38 H 1.09002 * 110.75911 * 155.58745 * 6 5 3 39 39 H 1.09004 * 109.87399 * 300.40268 * 13 12 10 40 40 H 1.08992 * 109.88121 * 61.55215 * 13 12 10 41 41 H 1.08994 * 110.73435 * 139.81737 * 14 13 12 42 42 H 1.08995 * 110.73572 * 262.95258 * 14 13 12 43 43 H 1.09002 * 110.37507 * 275.55112 * 16 12 10 44 44 H 1.09006 * 110.37004 * 37.89489 * 16 12 10 45 45 H 1.09003 * 109.43745 * 55.89039 * 17 15 14 46 46 H 1.08995 * 109.44076 * 175.77124 * 17 15 14 47 47 H 1.08997 * 109.50246 * 180.10520 * 18 17 15 48 48 H 1.09002 * 109.50011 * 59.98495 * 18 17 15 49 49 H 1.09001 * 109.55576 * 295.47102 * 19 18 17 50 50 H 1.08995 * 109.55597 * 175.14821 * 19 18 17 51 51 H 0.97000 * 119.99826 * 179.97438 * 24 23 21 52 52 H 1.08997 * 109.58195 * 292.45188 * 29 20 19 53 53 H 1.09001 * 109.68062 * 172.12364 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5934 2.0040 0.8205 5 6 1.7357 2.1247 -1.3560 6 6 3.0336 2.9324 -1.6116 7 8 4.0739 2.0658 -1.1103 8 6 3.5774 1.4710 0.1006 9 1 3.8815 2.0674 0.9608 10 6 4.1082 0.0672 0.2371 11 8 4.5710 -0.5026 -0.7283 12 7 4.0685 -0.5550 1.4319 13 6 3.4616 -0.0163 2.6587 14 6 3.6767 -1.0620 3.7750 15 6 4.8690 -1.8880 3.2470 16 6 4.6212 -1.8919 1.7238 17 6 4.8268 -3.3034 3.8014 18 6 4.9995 -3.2667 5.3232 19 6 6.3477 -2.6239 5.6638 20 7 6.4183 -1.2998 5.0308 21 6 6.6960 -0.1833 5.7735 22 1 6.3243 -0.1009 6.7841 23 6 7.4552 0.8424 5.2274 24 7 7.9013 0.7455 3.9929 25 14 7.8439 2.3602 6.2446 26 1 7.2313 2.2243 7.5904 27 1 9.3159 2.4998 6.3830 28 1 7.2940 3.5629 5.5690 29 6 6.1849 -1.1995 3.5818 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.5791 1.3824 -2.1385 36 1 0.8747 2.7880 -1.2732 37 1 3.0167 3.8713 -1.0583 38 1 3.1694 3.1184 -2.6770 39 1 3.9460 0.9215 2.9309 40 1 2.3950 0.1465 2.5040 41 1 3.9314 -0.5749 4.7162 42 1 2.7923 -1.6880 3.8931 43 1 3.9028 -2.6665 1.4554 44 1 5.5586 -2.0403 1.1877 45 1 3.8682 -3.7606 3.5561 46 1 5.6318 -3.8903 3.3592 47 1 4.9707 -4.2825 5.7173 48 1 4.1945 -2.6807 5.7667 49 1 7.1562 -3.2514 5.2887 50 1 6.4381 -2.5169 6.7447 51 1 8.4316 1.4625 3.6111 52 1 6.9990 -1.6874 3.0460 53 1 6.1327 -0.1505 3.2902 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040252638.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:07 Heat of formation + Delta-G solvation = -79.246899 kcal Electronic energy + Delta-G solvation = -32217.023753 eV Core-core repulsion = 28281.081142 eV Total energy + Delta-G solvation = -3935.942610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.02724 -40.65034 -39.05939 -37.26097 -35.78302 -34.88583 -32.92867 -31.72771 -31.29275 -30.55179 -30.28559 -27.42336 -26.92203 -24.86648 -24.05788 -23.79817 -23.60753 -22.27675 -21.70619 -20.18713 -19.52930 -18.53228 -18.16985 -17.57731 -17.33845 -16.96635 -16.77755 -15.90010 -15.77502 -15.57865 -15.37229 -15.21483 -15.04663 -14.95600 -14.56219 -14.35766 -14.02795 -13.84115 -13.68358 -13.52670 -13.43353 -13.32448 -13.02035 -12.84867 -12.74399 -12.58604 -12.54494 -12.39511 -12.17080 -12.09911 -12.07018 -11.81005 -11.67105 -11.63072 -11.46766 -11.28282 -11.21312 -11.05627 -10.99876 -10.53795 -10.50674 -9.63681 -8.52403 -7.84373 -5.40598 1.44079 1.45553 1.47229 1.56617 1.86302 2.49734 2.97254 3.25827 3.32407 3.41092 3.61134 3.65530 3.69642 3.91151 3.97598 4.00992 4.15410 4.25020 4.30478 4.34840 4.36850 4.39809 4.43489 4.47442 4.51816 4.63291 4.65411 4.70152 4.78286 4.79534 4.85188 4.86140 4.94349 4.97633 5.04689 5.07832 5.11979 5.18737 5.19532 5.22745 5.25620 5.32481 5.41888 5.43038 5.46114 5.51817 5.64869 5.70819 5.79135 5.85601 6.46033 6.49229 7.09020 7.19513 7.88307 8.43935 9.19679 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.004292 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.837659 B = 6522.840697 C = 7850.381749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C -0.102 4.102 4 H 0.122 0.878 5 C -0.137 4.137 6 C 0.033 3.967 7 O -0.391 6.391 8 C 0.063 3.937 9 H 0.090 0.910 10 C 0.530 3.470 11 O -0.581 6.581 12 N -0.607 5.607 13 C 0.100 3.900 14 C -0.100 4.100 15 C -0.087 4.087 16 C 0.123 3.877 17 C -0.090 4.090 18 C -0.119 4.119 19 C 0.135 3.865 20 N -0.606 5.606 21 C -0.253 4.253 22 H 0.069 0.931 23 C -0.044 4.044 24 N -0.937 5.937 25 Si 0.961 3.039 26 H -0.260 1.260 27 H -0.298 1.298 28 H -0.292 1.292 29 C 0.204 3.796 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.039 0.961 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.003 0.997 50 H 0.054 0.946 51 H 0.245 0.755 52 H -0.033 1.033 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.075 -0.375 -4.280 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C -0.120 4.120 4 H 0.140 0.860 5 C -0.175 4.175 6 C -0.042 4.042 7 O -0.310 6.310 8 C 0.002 3.998 9 H 0.108 0.892 10 C 0.319 3.681 11 O -0.462 6.462 12 N -0.341 5.341 13 C -0.022 4.022 14 C -0.138 4.138 15 C -0.089 4.089 16 C 0.000 4.000 17 C -0.128 4.128 18 C -0.158 4.158 19 C 0.010 3.990 20 N -0.329 5.329 21 C -0.383 4.383 22 H 0.087 0.913 23 C -0.239 4.239 24 N -0.583 5.583 25 Si 0.789 3.211 26 H -0.184 1.184 27 H -0.226 1.226 28 H -0.219 1.219 29 C 0.079 3.921 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.021 0.979 50 H 0.072 0.928 51 H 0.054 0.946 52 H -0.015 1.015 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.521 -0.543 -5.004 20.159 hybrid contribution 1.533 0.908 0.158 1.788 sum -17.988 0.364 -4.847 18.633 Atomic orbital electron populations 1.21695 0.92719 1.02297 1.02972 1.21856 0.98464 0.94636 1.01898 1.22614 0.89857 0.98650 1.00917 0.86039 1.23219 0.98847 0.99702 0.95693 1.23936 0.85830 0.93411 1.01043 1.88966 1.40695 1.61704 1.39632 1.22826 0.96589 0.90446 0.89925 0.89191 1.20474 0.77927 0.88252 0.81402 1.90638 1.48350 1.68192 1.38977 1.48513 1.57213 1.18950 1.09386 1.22331 0.98717 0.97739 0.83405 1.22449 0.97412 0.96520 0.97370 1.21720 0.97447 0.97579 0.92144 1.22198 0.97711 0.84385 0.95666 1.21207 1.02024 0.93574 0.96022 1.21894 0.97705 1.00696 0.95488 1.21132 0.95354 0.86057 0.96437 1.44220 1.82145 1.02421 1.04115 1.19473 1.25071 0.96038 0.97748 0.91292 1.26014 0.97589 1.02836 0.97454 1.70154 1.39469 1.33578 1.15067 0.85298 0.77072 0.79538 0.79172 1.18384 1.22570 1.21868 1.20253 0.89705 0.98678 0.83506 0.91804 0.92523 0.90966 0.94272 0.91057 0.90957 0.86339 0.90115 0.87710 0.92999 0.87878 0.90650 0.88164 0.89458 0.94257 0.89452 0.93457 0.90015 0.91416 0.97942 0.92761 0.94571 1.01489 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.78 71.98 0.70 -1.22 16 2 C -0.13 -2.71 4.03 30.59 0.12 -2.59 16 3 C -0.10 -2.02 2.74 -9.80 -0.03 -2.05 16 4 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 5 C -0.14 -2.28 5.98 31.90 0.19 -2.09 16 6 C 0.03 0.70 7.72 72.67 0.56 1.26 16 7 O -0.39 -13.21 10.79 -130.87 -1.41 -14.63 16 8 C 0.06 1.92 3.21 30.22 0.10 2.02 16 9 H 0.09 2.69 7.58 -2.39 -0.02 2.67 16 10 C 0.53 19.97 5.11 87.66 0.45 20.42 16 11 O -0.58 -27.02 16.89 15.08 0.25 -26.76 16 12 N -0.61 -20.63 2.51 -812.10 -2.04 -22.67 16 13 C 0.10 2.82 5.35 86.76 0.46 3.29 16 14 C -0.10 -2.89 4.88 31.55 0.15 -2.74 16 15 C -0.09 -3.00 0.55 -51.83 -0.03 -3.03 16 16 C 0.12 4.29 5.81 86.62 0.50 4.79 16 17 C -0.09 -2.62 4.65 30.35 0.14 -2.48 16 18 C -0.12 -3.48 5.92 30.73 0.18 -3.30 16 19 C 0.14 5.37 6.49 86.36 0.56 5.93 16 20 N -0.61 -29.30 2.60 -700.44 -1.82 -31.12 16 21 C -0.25 -13.36 9.56 84.03 0.80 -12.55 16 22 H 0.07 3.51 7.83 -2.91 -0.02 3.49 16 23 C -0.04 -2.40 5.26 84.86 0.45 -1.95 16 24 N -0.94 -56.30 10.82 21.65 0.23 -56.07 16 25 Si 0.96 44.31 29.55 68.60 2.03 46.33 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 29 C 0.20 9.81 3.85 86.01 0.33 10.14 16 30 H 0.06 0.77 7.59 -2.39 -0.02 0.75 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.04 1.05 7.66 -2.39 -0.02 1.03 16 34 H 0.07 1.59 4.31 -2.39 -0.01 1.58 16 35 H 0.07 1.34 7.78 -2.39 -0.02 1.32 16 36 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.68 7.82 -2.39 -0.02 1.66 16 40 H 0.10 2.10 6.32 -2.39 -0.02 2.08 16 41 H 0.07 2.57 7.67 -2.39 -0.02 2.55 16 42 H 0.10 2.17 7.99 -2.39 -0.02 2.15 16 43 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 44 H 0.04 1.64 7.98 -2.38 -0.02 1.62 16 45 H 0.09 1.94 8.10 -2.39 -0.02 1.92 16 46 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.07 1.91 7.40 -2.39 -0.02 1.89 16 49 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 50 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 51 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 52 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16 53 H 0.06 3.36 5.76 -2.39 -0.01 3.34 16 Total: -1.00 -75.78 392.82 3.77 -72.01 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.87 Total: 19.06 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 5.65 Total: 13.84 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -3.62 Total: -109.86 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.16 Total: -41.39 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -75.78 3.77 -72.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040252638.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.233 kcal (2) G-P(sol) polarization free energy of solvation -75.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds